IVF0013970 (gene) Melon (IVF77) v1

Overview
NameIVF0013970
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr02: 18157688 .. 18157951 (-)
RNA-Seq ExpressionIVF0013970
SyntenyIVF0013970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCATGAAGATCGAAAGACTTATGACCAATACGAAGCAAAGGGAAGAAACCGTCGGGGGACCGCTTTTTACCCCAGGACGAGAAAACTGAGTCAGGGACATTCTCGCTCGCGTTTTCTTGGGACGAACACTAAAAGTTCTCAAGCCCAGCCCGTTTTCTTCGCTGCAAGTGTATTTCAAGTGGTTTCTGACACCGGACGAGCGTTCGTCACTCGTTGGAAGCATTGGCCATCTTTTGGACTATTTTGGGTAGCACCTTAG

mRNA sequence

ATGAGCCATGAAGATCGAAAGACTTATGACCAATACGAAGCAAAGGGAAGAAACCGTCGGGGGACCGCTTTTTACCCCAGGACGAGAAAACTGAGTCAGGGACATTCTCGCTCGCGTTTTCTTGGGACGAACACTAAAAGTTCTCAAGCCCAGCCCGTTTTCTTCGCTGCAAGTGTATTTCAAGTGGTTTCTGACACCGGACGAGCGTTCGTCACTCGTTGGAAGCATTGGCCATCTTTTGGACTATTTTGGGTAGCACCTTAG

Coding sequence (CDS)

ATGAGCCATGAAGATCGAAAGACTTATGACCAATACGAAGCAAAGGGAAGAAACCGTCGGGGGACCGCTTTTTACCCCAGGACGAGAAAACTGAGTCAGGGACATTCTCGCTCGCGTTTTCTTGGGACGAACACTAAAAGTTCTCAAGCCCAGCCCGTTTTCTTCGCTGCAAGTGTATTTCAAGTGGTTTCTGACACCGGACGAGCGTTCGTCACTCGTTGGAAGCATTGGCCATCTTTTGGACTATTTTGGGTAGCACCTTAG

Protein sequence

MSHEDRKTYDQYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVFQVVSDTGRAFVTRWKHWPSFGLFWVAP
Homology
BLAST of IVF0013970 vs. ExPASy TrEMBL
Match: A0A5D3BQ75 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00560 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MSHEDRKTYDQYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVF 60
          MS +DRKTYDQY AKGRN R T FY RTRKLS  HSRS FLGT+T+S +A PV FAAS F
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 61 QVVSDTGRAFVTRWKHWPSFGLFWVAP 88
           VVSDTGRAF +RWKHWPSFG FWVAP
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

BLAST of IVF0013970 vs. ExPASy TrEMBL
Match: A0A5A7V5Z6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001940 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MSHEDRKTYDQYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVF 60
          MS +DRKTYDQY AKGRN R T FY RTRKLS  HSRS FLGT+T+S +A PV FAAS F
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 61 QVVSDTGRAFVTRWKHWPSFGLFWVAP 88
           VVSDTGRAF +RWKHWPSFG FWVAP
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

BLAST of IVF0013970 vs. ExPASy TrEMBL
Match: A0A5A7VJF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00010 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-17
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 27 RTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVFQVVSDTGRAFVTRWKHWPSFGLFWVA 86
          +TRKLS GHSRSRFLGT+T S +AQPV FAAS F VVSDTGRAF TRWK  PSFG FWVA
Sbjct: 14 KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

Query: 87 P 88
          P
Sbjct: 74 P 74

BLAST of IVF0013970 vs. ExPASy TrEMBL
Match: A0A5A7TUM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00010 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-08
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 11  QYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVFQVV 64
           Q  +KG+  R TAFYPR RKL  GHSRSRFLGT+T S +A+PV FAAS F VV
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

BLAST of IVF0013970 vs. NCBI nr
Match: TYK01208.1 (uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 2.30e-35
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MSHEDRKTYDQYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVF 60
          MS +DRKTYDQY AKGRN R T FY RTRKLS  HSRS FLGT+T+S +A PV FAAS F
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 61 QVVSDTGRAFVTRWKHWPSFGLFWVAP 87
           VVSDTGRAF +RWKHWPSFG FWVAP
Sbjct: 61 SVVSDTGRAFASRWKHWPSFGPFWVAP 87

BLAST of IVF0013970 vs. NCBI nr
Match: KAA0062674.1 (uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 4.37e-35
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MSHEDRKTYDQYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVF 60
          MS +DRKTYDQY AKGRN R T FY RTRKLS  HSRS FLGT+T+S +A PV FAAS F
Sbjct: 1  MSPDDRKTYDQYGAKGRNLRDTEFYTRTRKLSPRHSRSHFLGTSTESPRALPVSFAASAF 60

Query: 61 QVVSDTGRAFVTRWKHWPSFGLFWVAP 87
           VVSDTGRAF +RWKHWPSFG FWVAP
Sbjct: 61 SVVSDTGRAFTSRWKHWPSFGPFWVAP 87

BLAST of IVF0013970 vs. NCBI nr
Match: KAA0065855.1 (hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 4.39e-23
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 0

Query: 27 RTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVFQVVSDTGRAFVTRWKHWPSFGLFWVA 86
          +TRKLS GHSRSRFLGT+T S +AQPV FAAS F VVSDTGRAF TRWK  PSFG FWVA
Sbjct: 14 KTRKLSPGHSRSRFLGTSTGSPRAQPVSFAASAFPVVSDTGRAFATRWKLRPSFGPFWVA 73

BLAST of IVF0013970 vs. NCBI nr
Match: KAA0046850.1 (hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 3.63e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 11  QYEAKGRNRRGTAFYPRTRKLSQGHSRSRFLGTNTKSSQAQPVFFAASVFQVV 63
           Q  +KG+  R TAFYPR RKL  GHSRSRFLGT+T S +A+PV FAAS F VV
Sbjct: 175 QIRSKGKKPRETAFYPRMRKLGAGHSRSRFLGTSTGSPRAKPVSFAASAFSVV 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BQ752.2e-2875.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V5Z62.2e-2875.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VJF76.8e-1778.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TUM94.4e-0866.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYK01208.12.30e-3575.86uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa][more]
KAA0062674.14.37e-3575.86uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa][more]
KAA0065855.14.39e-2378.69hypothetical protein E6C27_scaffold538G00010 [Cucumis melo var. makuwa][more]
KAA0046850.13.63e-1166.04hypothetical protein E6C27_scaffold19358G00010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013970.1IVF0013970.1mRNA