IVF0011827 (gene) Melon (IVF77) v1

Overview


Name	IVF0011827
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr02: 12567597 .. 12567926 (-)
RNA-Seq Expression	IVF0011827
Synteny	IVF0011827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCATCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

mRNA sequence

ATGGAGGCCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCATCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Coding sequence (CDS)

ATGGAGGCCGCAAAGTCTACGAGTGCATCCACAATAAGGTTAGCACTTGTATTCCTAGTCTGCATAGTCATTTTAGCACCATCAGTGACGGCCCACACGATGGCAGAAGCACCAAGTCCATTATTAGTACTACTTGATCAGGATTCATCTTTCTCAAACTGCGCTCCTTTTATTTTAGAAGCGACAATGTGTATGGTGGATGTAATCAAGCTTCCTGTTGCTCCTCATCCTTCTTGTTGCAAAGCCATTTCTGACCTTAACGATTGTGCTCCCGAAATTTATCAACATATTCCTGGCATGGATGTGATTAAGAAAATCTGTGGCCTATGA

Protein sequence

MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL

Homology

[Close]

BLAST of IVF0011827 vs. ExPASy TrEMBL
Match: A0A5D3CGL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00200 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.6e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE
Sbjct: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL
Sbjct: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109

[Close]

BLAST of IVF0011827 vs. ExPASy TrEMBL
Match: A0A5A7U4A7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00450 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE
Sbjct: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIY HIPGMDVIKKICGL
Sbjct: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICGL 109

[Close]

BLAST of IVF0011827 vs. ExPASy TrEMBL
Match: A0A0A0LTD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQ-DSSFSNCAPFIL 60
           MEA KSTSASTIRLA+VFLVCIVILAPSVTA TMAEAPSP+LVL D+ DSSFSNCAPFIL
Sbjct: 1   MEATKSTSASTIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFIL 60

Query: 61  EATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           EATMC+VDVIKLPVA HPSCCKAISDLNDCAP+IYQHIP MDVIKKICGL
Sbjct: 61  EATMCVVDVIKLPVASHPSCCKAISDLNDCAPQIYQHIPDMDVIKKICGL 110

[Close]

BLAST of IVF0011827 vs. ExPASy TrEMBL
Match: A0A5A7U475 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00490 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.5e-33
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           ME  +  S   ++++L FLV + ILAPS TA T+A APSPL +   +D SFSNC PFIL+
Sbjct: 1   MEENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLAL---EDLSFSNCTPFILD 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 110
           ATMC+V VIK PVAPHPSCCKAISDLNDC+PE+YQHIPGMDVIKKIC L
Sbjct: 61  ATMCVVSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKICSL 106

[Close]

BLAST of IVF0011827 vs. ExPASy TrEMBL
Match: A0A5A7U9A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00160 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.7e-29
Identity = 74/110 (67.27%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 3   AAKSTSASTIRLALVFLVCIVILAPSVT-AHTMAEAPSPLLVLLDQDSSFSNCAPFILEA 62
           AA+S + S ++L LVFLVCI ILAPS T A T A APSP    + Q+  F  CAPFILEA
Sbjct: 2   AAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSP---SVPQNFPFLKCAPFILEA 61

Query: 63  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPG--MDVIKKICGL 110
           T+C+ DVIK P+APHPSCCKAIS LNDCAPEIYQ IP   MDVIKKIC L
Sbjct: 62  TLCVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of IVF0011827 vs. NCBI nr
Match: TYK10344.1 (hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (555), Expect = 1.88e-71
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE
Sbjct: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109
           ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL
Sbjct: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109

[Close]

BLAST of IVF0011827 vs. NCBI nr
Match: KAA0050064.1 (hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 1.09e-70
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE
Sbjct: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109
           ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIY HIPGMDVIKKICGL
Sbjct: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYHHIPGMDVIKKICGL 109

[Close]

BLAST of IVF0011827 vs. NCBI nr
Match: KAA0050068.1 (hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 5.84e-45
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1   MEAAKSTSASTIRLALVFLVCIVILAPSVTAHTMAEAPSPLLVLLDQDSSFSNCAPFILE 60
           ME  +  S   ++++L FLV + ILAPS TA T+A APSPL +   +D SFSNC PFIL+
Sbjct: 1   MEENRGMSTFIMKISLTFLVGMAILAPSATATTVAAAPSPLAL---EDLSFSNCTPFILD 60

Query: 61  ATMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPGMDVIKKICGL 109
           ATMC+V VIK PVAPHPSCCKAISDLNDC+PE+YQHIPGMDVIKKIC L
Sbjct: 61  ATMCVVSVIKFPVAPHPSCCKAISDLNDCSPEVYQHIPGMDVIKKICSL 106

[Close]

BLAST of IVF0011827 vs. NCBI nr
Match: KAA0050069.1 (hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK10341.1 hypothetical protein E5676_scaffold367G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 1.33e-39
Identity = 74/110 (67.27%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 3   AAKSTSASTIRLALVFLVCIVILAPSVT-AHTMAEAPSPLLVLLDQDSSFSNCAPFILEA 62
           AA+S + S ++L LVFLVCI ILAPS T A T A APSP    + Q+  F  CAPFILEA
Sbjct: 2   AAQSLNVSAMKLVLVFLVCIAILAPSTTMADTTAAAPSP---SVPQNFPFLKCAPFILEA 61

Query: 63  TMCMVDVIKLPVAPHPSCCKAISDLNDCAPEIYQHIPG--MDVIKKICGL 109
           T+C+ DVIK P+APHPSCCKAIS LNDCAPEIYQ IP   MDVIKKIC L
Sbjct: 62  TLCVTDVIKFPIAPHPSCCKAISKLNDCAPEIYQKIPSPDMDVIKKICSL 108

[Close]

BLAST of IVF0011827 vs. NCBI nr
Match: TYK10334.1 (hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.45e-33
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 13  RLALVFLVCIVILAPSVT-AHTMAEAPSPLLVLLDQDSSFSNCAPFILEATMCMVDVIKL 72
           +L LVFLVCI ILAPS T A T A APSP    + Q+  F  CAPFILEAT+C+  VIK 
Sbjct: 2   KLVLVFLVCIAILAPSTTMAGTTAAAPSP---SVPQNFPFLKCAPFILEATLCVTGVIKF 61

Query: 73  PVAPHPSCCKAISDLNDCAPEIYQHIPG--MDVIKKICGL 109
           P+APHPSCCKAIS L DCAP+IYQ IP   M+VIKK C L
Sbjct: 62  PIAPHPSCCKAISKLKDCAPDIYQKIPSSDMNVIKKTCSL 98

The following BLAST results are available for this feature:

BLAST of IVF0011827 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGL7	5.6e-53	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4A7	2.1e-52	99.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LTD6	3.0e-46	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G263450 PE=4 SV=1	[more]
A0A5A7U475	8.5e-33	67.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9A1	9.7e-29	67.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0011827 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10344.1	1.88e-71	100.00	hypothetical protein E5676_scaffold367G00200 [Cucumis melo var. makuwa]	[more]
KAA0050064.1	1.09e-70	99.08	hypothetical protein E6C27_scaffold675G00450 [Cucumis melo var. makuwa]	[more]
KAA0050068.1	5.84e-45	67.89	hypothetical protein E6C27_scaffold675G00490 [Cucumis melo var. makuwa]	[more]
KAA0050069.1	1.33e-39	67.27	hypothetical protein E6C27_scaffold675G00500 [Cucumis melo var. makuwa] >TYK1034...	[more]
TYK10334.1	2.45e-33	65.00	hypothetical protein E5676_scaffold367G00080 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011827 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011827.2	IVF0011827.2	mRNA