IVF0004461 (gene) Melon (IVF77) v1

Overview


Name	IVF0004461
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S16
Location	chr06: 3766440 .. 3766873 (+)
RNA-Seq Expression	IVF0004461
Synteny	IVF0004461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACCGCAGTTGCTGTAACATACTGCAAGCGCGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGCCAGAGCATCGCTAAGGCTCTCGTTGCCTTTTACCAGAAGTACGTCGACGAACAGAGCAGAAGGAGATAAAGGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGA

mRNA sequence

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACCGCAGTTGCTGTAACATACTGCAAGCGCGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGCCAGAGCATCGCTAAGGCTCTCGTTGCCTTTTACCAGAAGTACGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGA

Coding sequence (CDS)

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACCGCAGTTGCTGTAACATACTGCAAGCGCGGCCGAGGCTTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAACCTGAGATCTTACGCTTCAAGGCCTACGAACCCATCCTCCTTCTCGGCCGACACCGCTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCACAGATCTACGCTATCCGCCAGAGCATCGCTAAGGCTCTCGTTGCCTTTTACCAGAAGTACGACATTCTCGTTCGCTACGATCGGACTTTGCTCGTCGCTGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGATTCCAGAAATCATATCGTTGA

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR

Homology

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BLAST of IVF0004461 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.9e-64
Identity = 125/140 (89.29%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARARFQKSYR 135
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of IVF0004461 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-61
Identity = 120/145 (82.76%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKY          DIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 135
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

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BLAST of IVF0004461 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.7e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 135
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of IVF0004461 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.7e-61
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 135
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

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BLAST of IVF0004461 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.0e-58
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKY          D+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 135
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

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BLAST of IVF0004461 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 135
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

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BLAST of IVF0004461 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 135
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 135
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. ExPASy TrEMBL
Match: A0A6J1D637 (40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 135
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. ExPASy TrEMBL
Match: A0A6J1FW85 (40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 135
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (678), Expect = 2.90e-89
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 134
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 265 bits (677), Expect = 4.13e-89
Identity = 133/144 (92.36%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 134
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 264 bits (675), Expect = 8.33e-89
Identity = 133/144 (92.36%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 134
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. NCBI nr
Match: XP_040987369.1 (40S ribosomal protein S16 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 264 bits (674), Expect = 1.18e-88
Identity = 132/144 (91.67%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 134
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of IVF0004461 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 265 bits (678), Expect = 1.54e-88
Identity = 134/144 (93.06%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY          DILVRYDRTLLVA
Sbjct: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 134
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 170 DPRRCEPKKFGGRGARARFQKSYR 193

[Close]

BLAST of IVF0004461 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 234.6 bits (597), Expect = 4.7e-62
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 135
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of IVF0004461 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 6.2e-62
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 135
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of IVF0004461 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 221.1 bits (562), Expect = 5.4e-58
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKY          DIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 135
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of IVF0004461 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-52
Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRYDRTLLVADPRRC 121
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

[Close]

BLAST of IVF0004461 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-43
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKY----------DILVRY 104
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKY          DILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of IVF0004461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46293	2.9e-64	89.29	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
O22647	1.8e-61	82.76	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
Q9SK22	6.7e-61	82.01	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
Q42340	8.7e-61	81.29	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
Q9XEK7	4.0e-58	78.87	40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of IVF0004461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J781	1.3e-67	93.06	40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ...	[more]
A0A0A0L6F6	1.3e-67	93.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1	[more]
A0A1S3C210	1.3e-67	93.06	40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1	[more]
A0A6J1D637	1.3e-67	93.06	40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV...	[more]
A0A6J1FW85	1.3e-67	93.06	40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=...	[more]

BLAST of IVF0004461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136973.1	2.90e-89	93.06	40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei...	[more]
XP_022149351.1	4.13e-89	92.36	40S ribosomal protein S16-like [Momordica charantia]	[more]
XP_022989000.1	8.33e-89	92.36	40S ribosomal protein S16-like [Cucurbita maxima]	[more]
XP_040987369.1	1.18e-88	91.67	40S ribosomal protein S16 [Juglans microcarpa x Juglans regia]	[more]
KAE8645860.1	1.54e-88	93.06	hypothetical protein Csa_017052 [Cucumis sativus]	[more]

BLAST of IVF0004461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G09990.1	4.7e-62	82.01	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	6.2e-62	81.29	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	5.4e-58	77.70	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.2	3.4e-52	78.40	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.3	2.9e-43	76.85	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 2..134 e-value: 7.2E-49 score: 167.7
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..134 e-value: 1.1E-30 score: 106.7
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 1..134
None	No IPR available	PANTHER	PTHR21569:SF35	30S RIBOSOMAL PROTEIN S9P	coord: 1..134
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 7..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0004461.1	IVF0004461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome