IVF0003096 (gene) Melon (IVF77) v1

Overview


Name	IVF0003096
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	vegetative cell wall protein gp1-like
Location	chr08: 4787786 .. 4788712 (+)
RNA-Seq Expression	IVF0003096
Synteny	IVF0003096

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAGCAAAGTGAATTCTGTGAGCGAATTGTTCCTTTCTAAACCGCATCGTTTGGCTCTTCCACTCTCACTACCTTCTCCGAGATACTCTGTTTTGAGCAAAACAAATCTTCTTTTCCCTTTTTCTTCCCGATAAAGACGATGGGATTCTCCGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCGCCTGTGCCGGCACCGGGTTCTCCACAGCCTCTAACTCCTCCATCAGCCACACCGGCGCCTTCTCCGGTCGTTCTCCCTCCATCTCCAACTCCAACACCAAACAGAGCACCATCGCCTTCACCGACTCCGGTATCGCCTTCACCCGCTCCGTATGCTCCGTCACCCGCACCAGTGGTACCTGCTCCAGCTCCGGCGCCTATTGCTCCTACCCCAACTCCAATCTCTACTCCTACTCCTTCCGGTGGTCCTGTTGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCAGCACCCCAAGGCCCGCCGGCCGATAACCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCAGCGACGTTGGGGATCGCTTTGGCTGGTACTCTGTTTGCAGTGATTTTATCGTAGACGTTGATGCGTTGGGTCAACTTAGAGATCTAAATTTGGAGGTGAATTGGAGTGATGGCTGAAGGAATTCTTTTGCTTTTTTGTTTTTTGAAAAAAAATCTCTTTCCTACACTACTACTGCCTTCACATAATTTCATTGTTATTATTATTATTTTGATGTTTCAGATTTTAGGGAGTTGGGTTTTGTAATTTCGATAGGTTTGGTTACTTTTTAGTATTCATTGTTCTTCTGTTGATTATATTTGAATTCTTTGTAGATCGGATCAGTGATGAATAAGAGTTTTTTCTTTTCTTA

mRNA sequence

AAAACAAGCAAAGTGAATTCTGTGAGCGAATTGTTCCTTTCTAAACCGCATCGTTTGGCTCTTCCACTCTCACTACCTTCTCCGAGATACTCTGTTTTGAGCAAAACAAATCTTCTTTTCCCTTTTTCTTCCCGATAAAGACGATGGGATTCTCCGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCGCCTGTGCCGGCACCGGGTTCTCCACAGCCTCTAACTCCTCCATCAGCCACACCGGCGCCTTCTCCGGTCGTTCTCCCTCCATCTCCAACTCCAACACCAAACAGAGCACCATCGCCTTCACCGACTCCGGTATCGCCTTCACCCGCTCCGTATGCTCCGTCACCCGCACCAGTGGTACCTGCTCCAGCTCCGGCGCCTATTGCTCCTACCCCAACTCCAATCTCTACTCCTACTCCTTCCGGTGGTCCTGTTGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCAGCACCCCAAGGCCCGCCGGCCGATAACCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCAGCGACGTTGGGGATCGCTTTGGCTGGTACTCTGTTTGCAGTGATTTTATCGTAGACGTTGATGCGTTGGGTCAACTTAGAGATCTAAATTTGGAGGTGAATTGGAGTGATGGCTGAAGGAATTCTTTTGCTTTTTTGTTTTTTGAAAAAAAATCTCTTTCCTACACTACTACTGCCTTCACATAATTTCATTGTTATTATTATTATTTTGATGTTTCAGATTTTAGGGAGTTGGGTTTTGTAATTTCGATAGGTTTGGTTACTTTTTAGTATTCATTGTTCTTCTGTTGATTATATTTGAATTCTTTGTAGATCGGATCAGTGATGAATAAGAGTTTTTTCTTTTCTTA

Coding sequence (CDS)

ATGGGATTCTCCGGGGTTCGATTCGTTGTGATTTTTGCTTTGTTGACGAGGTTATGTATGGCTCAGGCGCCTGTGCCGGCACCGGGTTCTCCACAGCCTCTAACTCCTCCATCAGCCACACCGGCGCCTTCTCCGGTCGTTCTCCCTCCATCTCCAACTCCAACACCAAACAGAGCACCATCGCCTTCACCGACTCCGGTATCGCCTTCACCCGCTCCGTATGCTCCGTCACCCGCACCAGTGGTACCTGCTCCAGCTCCGGCGCCTATTGCTCCTACCCCAACTCCAATCTCTACTCCTACTCCTTCCGGTGGTCCTGTTGTTCCACCCATTGCTTCTCCTCCTTCACCCACCGGAATCGAGGTGCCTTCACCAGCACCCCAAGGCCCGCCGGCCGATAACCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCAGCGACGTTGGGGATCGCTTTGGCTGGTACTCTGTTTGCAGTGATTTTATCGTAG

Protein sequence

MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAPSPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS

Homology

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BLAST of IVF0003096 vs. ExPASy Swiss-Prot
Match: Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-06
Identity = 66/126 (52.38%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 24  PVPAPGSPQPLTPPS-ATPAPSPVVLPPSPTPTPNRAP--SPSPTPVSPSPAPYAPSPAP 83
           P PAP SP P +PPS A P+PSP   PPSP+P P+ AP   PSP P SPSP P  PSP+P
Sbjct: 109 PSPAPPSPAPPSPPSPAPPSPSPPA-PPSPSP-PSPAPPLPPSPAPPSPSP-PVPPSPSP 168

Query: 84  VVPAPAPAPIAPT------PTPISTPTPSGGPVVPPIASPPSPTGIEVPSPAPQGPPADN 141
            VP P+PAP +PT      P P S   PS  P VPP  +PPSP     PSPAP  PP+  
Sbjct: 169 PVP-PSPAPPSPTPPSPSPPVPPSPAPPSPAPPVPPSPAPPSPAPPVPPSPAPPSPPSPA 228

[Close]

BLAST of IVF0003096 vs. ExPASy Swiss-Prot
Match: O10341 (Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=ORF92 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.8e-05
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 23  APVPAPGSPQPLTPPSATPAPSPV-VLPPSPTPTPNRAPSPSPTPV-SPSPAPYAPSPAP 82
           +P P P +P P   P+ TP+P+P   L P+PTP+P  +P+PSPTP  SP+P+P  PSP P
Sbjct: 52  SPTPTP-TPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSP-TPSPTP 111

Query: 83  VVPAPAPAPI-APTPTPISTPTPSGGPVVPPIASP-PSPTGIEVPSPAPQGPPADNPA 137
             P+P P+P   P+PTP  TPTPS  P   P  SP PSPT    P+P+P   P+  P+
Sbjct: 112 -TPSPTPSPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPS 166

[Close]

BLAST of IVF0003096 vs. ExPASy Swiss-Prot
Match: Q9FM99 (Alpha carbonic anhydrase 8 OS=Arabidopsis thaliana OX=3702 GN=ACA8 PE=3 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-04
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNR-A 60
           M  S + +V++   ++   ++ AP P P  P+P       PAP+P    P+P PTP +  
Sbjct: 1   MKISSLGWVLVLIFISITIVSSAPAPKPPKPKP------APAPTPPKPKPTPAPTPPKPK 60

Query: 61  PSPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTG 120
           P P+PTP  P PAP AP+P    PAPAP P  P P P  TP P+  P   P    P P  
Sbjct: 61  PKPAPTPPKPKPAP-APTPPKPKPAPAPTPPKPKPKPAPTP-PNPKPTPAPTPPKPKPAP 120

Query: 121 IEVPSPAPQGPPADNPA 137
              P+PAP+  PA  PA
Sbjct: 121 APAPTPAPKPKPAPKPA 129

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BLAST of IVF0003096 vs. ExPASy TrEMBL
Match: A0A5D3CNQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003120 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.2e-69
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP
Sbjct: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120
           SPSPTPVSPSPAP APSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI
Sbjct: 61  SPSPTPVSPSPAPDAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120

Query: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 163
           EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS
Sbjct: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162

[Close]

BLAST of IVF0003096 vs. ExPASy TrEMBL
Match: A0A0A0KG74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499150 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 146/162 (90.12%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVRFV+IFALLTRLCMAQAP PAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP
Sbjct: 1   MGFSGVRFVLIFALLTRLCMAQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120
           SPSPTPVSPSPAP A S       PAPAPIAPTPTPISTPTPSGGPV+PPIASPPSPTG+
Sbjct: 61  SPSPTPVSPSPAPDAAS-------PAPAPIAPTPTPISTPTPSGGPVLPPIASPPSPTGM 120

Query: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 163
           EVPSPAPQGP ADNPAGA SHIGGAATLGIALAGTLF VILS
Sbjct: 121 EVPSPAPQGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

[Close]

BLAST of IVF0003096 vs. ExPASy TrEMBL
Match: A0A6J1ITI1 (vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC111478507 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.4e-33
Identity = 111/175 (63.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVR VVIFAL+  LC AQAP PA  SP+P+ P  ATPAPSPV  PPSP+ +P RAP
Sbjct: 1   MGFSGVRLVVIFALMA-LCTAQAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAP---------VVPAPAPAPIAPTPTPISTPTPS----GGPV 120
           SPSPT  SPSPA  APSPAP           P P+PA  APTP P S P PS    G PV
Sbjct: 61  SPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPV 120

Query: 121 VPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 163
           VPPIASPPSP+  + PSP P+ P AD+PAGAASHIGGA TLGIA+AGTL A++++
Sbjct: 121 VPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 173

[Close]

BLAST of IVF0003096 vs. ExPASy TrEMBL
Match: A0A6J1GF55 (vegetative cell wall protein gp1-like OS=Cucurbita moschata OX=3662 GN=LOC111453383 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 110/179 (61.45%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPG----SPQPLTPPSATPAPSPVVLPPSPTPTP 60
           MG SGVR VVIFAL+  LC AQAP P P     SP+P+ P  ATPAPSPV  PPSP+ +P
Sbjct: 1   MGSSGVRLVVIFALMA-LCTAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSP 60

Query: 61  NRAPSPSPTPVSPSPAPYAPSPAP---------VVPAPAPAPIAPTPTPISTPTPS---- 120
            RAPSPSPT  SPSPA  APSPAP           P P+PA  APTP P S P PS    
Sbjct: 61  IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPVPSGSPA 120

Query: 121 GGPVVPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 163
           G PVVPPIASPPSP+  + PSP P+ P AD+PAGAASHIGGA TLGIA+AGTL A++++
Sbjct: 121 GAPVVPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177

[Close]

BLAST of IVF0003096 vs. ExPASy TrEMBL
Match: A0A6J1KP28 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497414 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-16
Identity = 76/162 (46.91%), Postives = 97/162 (59.88%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVRF+++ ALL   CMAQAP P P                     P+PT  P++  
Sbjct: 1   MGFSGVRFIMVLALLAATCMAQAPAPVPA--------------------PAPTQGPSQPL 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120
            P+P   +PS +P +P+PAP    P PAPI P      + +P+GGPVVP +ASP      
Sbjct: 61  PPAPATPAPSSSPASPTPAPETSTPTPAPITP------SGSPAGGPVVPRVASP------ 120

Query: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 163
             PS AP+GPPADNP GAAS IG A TLG+A+AG+L AV+L+
Sbjct: 121 --PSSAPEGPPADNPTGAASQIGRAGTLGMAVAGSLLAVMLA 128

[Close]

BLAST of IVF0003096 vs. NCBI nr
Match: KAA0036330.1 (hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa] >TYK12724.1 hypothetical protein E5676_scaffold255G003120 [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (698), Expect = 1.50e-91
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP
Sbjct: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120
           SPSPTPVSPSPAP APSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI
Sbjct: 61  SPSPTPVSPSPAPDAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120

Query: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
           EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS
Sbjct: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162

[Close]

BLAST of IVF0003096 vs. NCBI nr
Match: XP_038881138.1 (vegetative cell wall protein gp1-like [Benincasa hispida])

HSP 1 Score: 214 bits (545), Expect = 2.92e-68
Identity = 136/162 (83.95%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVR+VVIFALLTRLCMAQAP PAPGS QPL P   TPAPSPVV PPSPTPTPNRAP
Sbjct: 1   MGFSGVRYVVIFALLTRLCMAQAPAPAPGSSQPLPPLPTTPAPSPVVFPPSPTPTPNRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTGI 120
           S SP P SPSPAP APSPAP VPAPAPA  APTP P S+ TPSGGPVVPPIASPPSPTGI
Sbjct: 61  SLSPAPASPSPAPEAPSPAPAVPAPAPATTAPTPAPSSSLTPSGGPVVPPIASPPSPTGI 120

Query: 121 EVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
           EVPS APQ P ADNPAGAASHIGGAA  GIA+AGTLFAVIL+
Sbjct: 121 EVPSSAPQAPAADNPAGAASHIGGAA-FGIAVAGTLFAVILA 161

[Close]

BLAST of IVF0003096 vs. NCBI nr
Match: XP_022978568.1 (vegetative cell wall protein gp1-like [Cucurbita maxima])

HSP 1 Score: 152 bits (383), Expect = 1.75e-43
Identity = 111/175 (63.43%), Postives = 126/175 (72.00%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAP 60
           MGFSGVR VVIFAL+  LC AQAP PA  SP+P+ P  ATPAPSPV  PPSP+ +P RAP
Sbjct: 1   MGFSGVRLVVIFALMA-LCTAQAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAP 60

Query: 61  SPSPTPVSPSPAPYAPSPAPVV---------PAPAPAPIAPTPTPISTPTPSGGP----V 120
           SPSPT  SPSPA  APSPAP           P P+PA  APTP P S P PSG P    V
Sbjct: 61  SPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPV 120

Query: 121 VPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
           VPPIASPPSP+  + PSP P+ P AD+PAGAASHIGGA TLGIA+AGTL A++++
Sbjct: 121 VPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 173

[Close]

BLAST of IVF0003096 vs. NCBI nr
Match: XP_023544207.1 (vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150 bits (380), Expect = 5.61e-43
Identity = 112/179 (62.57%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPG----SPQPLTPPSATPAPSPVVLPPSPTPTP 60
           MGFSGVR VVIFAL+  LCMAQAP P P     SP+P+ P  ATPAPSPV  PP+P+ +P
Sbjct: 1   MGFSGVRLVVIFALMA-LCMAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPAPSRSP 60

Query: 61  NRAPSPSPTPVSPSPAPYAPSPAPVV---------PAPAPAPIAPTPTPISTPTPSGGP- 120
            RAPSPSPT  SPSPA  APSPAP           P P+PA  APTP P S P PSG P 
Sbjct: 61  IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPA 120

Query: 121 ---VVPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
              VVPPIASPPSP+  E PSP P+ P AD+PAGAASHIGGA TLGIA+AGTL A++++
Sbjct: 121 GAPVVPPIASPPSPS-TEGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177

[Close]

BLAST of IVF0003096 vs. NCBI nr
Match: XP_022950235.1 (vegetative cell wall protein gp1-like [Cucurbita moschata])

HSP 1 Score: 145 bits (367), Expect = 5.21e-41
Identity = 110/179 (61.45%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPG----SPQPLTPPSATPAPSPVVLPPSPTPTP 60
           MG SGVR VVIFAL+  LC AQAP P P     SP+P+ P  ATPAPSPV  PPSP+ +P
Sbjct: 1   MGSSGVRLVVIFALMA-LCTAQAPAPTPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSP 60

Query: 61  NRAPSPSPTPVSPSPAPYAPSPAPVV---------PAPAPAPIAPTPTPISTPTPSGGP- 120
            RAPSPSPT  SPSPA  APSPAP           P P+PA  APTP P S P PSG P 
Sbjct: 61  IRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPVPSGSPA 120

Query: 121 ---VVPPIASPPSPTGIEVPSPAPQGPPADNPAGAASHIGGAATLGIALAGTLFAVILS 162
              VVPPIASPPSP+  + PSP P+ P AD+PAGAASHIGGA TLGIA+AGTL A++++
Sbjct: 121 GAPVVPPIASPPSPS-TDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 177

[Close]

BLAST of IVF0003096 vs. TAIR 10
Match: AT5G56330.1 (alpha carbonic anhydrase 8 )

HSP 1 Score: 46.6 bits (109), Expect = 2.2e-05
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MGFSGVRFVVIFALLTRLCMAQAPVPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNR-A 60
           M  S + +V++   ++   ++ AP P P  P+P       PAP+P    P+P PTP +  
Sbjct: 1   MKISSLGWVLVLIFISITIVSSAPAPKPPKPKP------APAPTPPKPKPTPAPTPPKPK 60

Query: 61  PSPSPTPVSPSPAPYAPSPAPVVPAPAPAPIAPTPTPISTPTPSGGPVVPPIASPPSPTG 120
           P P+PTP  P PAP AP+P    PAPAP P  P P P  TP P+  P   P    P P  
Sbjct: 61  PKPAPTPPKPKPAP-APTPPKPKPAPAPTPPKPKPKPAPTP-PNPKPTPAPTPPKPKPAP 120

Query: 121 IEVPSPAPQGPPADNPA 137
              P+PAP+  PA  PA
Sbjct: 121 APAPTPAPKPKPAPKPA 129

The following BLAST results are available for this feature:

BLAST of IVF0003096 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPQ6	5.7e-06	52.38	Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=...	[more]
O10341	4.8e-05	47.46	Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosi...	[more]
Q9FM99	3.1e-04	39.42	Alpha carbonic anhydrase 8 OS=Arabidopsis thaliana OX=3702 GN=ACA8 PE=3 SV=3	[more]

BLAST of IVF0003096 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNQ6	2.2e-69	99.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KG74	4.1e-60	90.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499150 PE=4 SV=1	[more]
A0A6J1ITI1	7.4e-33	63.43	vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC11147850...	[more]
A0A6J1GF55	5.3e-31	61.45	vegetative cell wall protein gp1-like OS=Cucurbita moschata OX=3662 GN=LOC111453...	[more]
A0A6J1KP28	3.7e-16	46.91	classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

BLAST of IVF0003096 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036330.1	1.50e-91	99.38	hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa] >TYK1272...	[more]
XP_038881138.1	2.92e-68	83.95	vegetative cell wall protein gp1-like [Benincasa hispida]	[more]
XP_022978568.1	1.75e-43	63.43	vegetative cell wall protein gp1-like [Cucurbita maxima]	[more]
XP_023544207.1	5.61e-43	62.57	vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022950235.1	5.21e-41	61.45	vegetative cell wall protein gp1-like [Cucurbita moschata]	[more]

BLAST of IVF0003096 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56330.1	2.2e-05	39.42	alpha carbonic anhydrase 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 24..36 score: 36.92 coord: 60..76 score: 44.71 coord: 38..59 score: 36.36 coord: 77..94 score: 38.89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..132
None	No IPR available	PANTHER	PTHR36321:SF6	CLASSICAL ARABINOGALACTAN PROTEIN 2	coord: 69..161 coord: 1..80
IPR044959	Classical arabinogalactan protein	PANTHER	PTHR36321	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 69..161 coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003096.1	IVF0003096.1	mRNA