IVF0008399 (gene) Melon (IVF77) v1

Overview


Name	IVF0008399
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr08: 26263505 .. 26263825 (+)
RNA-Seq Expression	IVF0008399
Synteny	IVF0008399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTGGTAGAATTGACTTCATTGGAAGTACCGGGTAAGATAGAAGTAGCGCTACTGTCCATTTTGGGATTTTCTGCAAAGGGAGTGATGAAATTGCGGGGTTGGGTAAAGGGCCAACACTTGATAGTGTTGATTGATAGCATAGCAACCCACAATTTTATCCACCAACGATTAGTGGACGAATTGAACCTACCCATTATAGAAGAGTCAAAATTCGGGGTGACAATTGGGGATGAAACAATGCGAGAAGGAAGAGGCATTTGTAGAAGAGTTGAAGTGGTTTTGGTTGAGATAAGTATTGTGTGGCCAATTTTTTAG

mRNA sequence

ATGCAATTGGTAGAATTGACTTCATTGGAAGTACCGGGTAAGATAGAAGTAGCGCTACTGTCCATTTTGGGATTTTCTGCAAAGGGAGTGATGAAATTGCGGGGTTGGGTAAAGGGCCAACACTTGATAGTGTTGATTGATAGCATAGCAACCCACAATTTTATCCACCAACGATTAGTGGACGAATTGAACCTACCCATTATAGAAGAGTCAAAATTCGGGGTGACAATTGGGGATGAAACAATGCGAGAAGGAAGAGGCATTTGTAGAAGAGTTGAAGTGGTTTTGGTTGAGATAAGTATTGTGTGGCCAATTTTTTAG

Coding sequence (CDS)

ATGCAATTGGTAGAATTGACTTCATTGGAAGTACCGGGTAAGATAGAAGTAGCGCTACTGTCCATTTTGGGATTTTCTGCAAAGGGAGTGATGAAATTGCGGGGTTGGGTAAAGGGCCAACACTTGATAGTGTTGATTGATAGCATAGCAACCCACAATTTTATCCACCAACGATTAGTGGACGAATTGAACCTACCCATTATAGAAGAGTCAAAATTCGGGGTGACAATTGGGGATGAAACAATGCGAGAAGGAAGAGGCATTTGTAGAAGAGTTGAAGTGGTTTTGGTTGAGATAAGTATTGTGTGGCCAATTTTTTAG

Protein sequence

MQLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDELNLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIVWPIF

Homology

[Close]

BLAST of IVF0008399 vs. ExPASy TrEMBL
Match: A0A5A7SNT7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00270 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MQLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLV 60
           M+LVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLI+SIATHNFIHQ+LV
Sbjct: 5   MKLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLINSIATHNFIHQQLV 64

Query: 61  DELNLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 103
           DELNLP IEESKFGVTIGDETMREG GICRRVEVVLV+I IV
Sbjct: 65  DELNLPNIEESKFGVTIGDETMREGSGICRRVEVVLVDIIIV 106

[Close]

BLAST of IVF0008399 vs. ExPASy TrEMBL
Match: A0A5D3BQE6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00690 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 4   VELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDEL 63
           VE  +LEV  K E++L +ILGF++KG MKLRG +KG+ +I+LIDS ATHNFIHQ ++ EL
Sbjct: 273 VEFETLEVKRKTEISLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIIQEL 332

Query: 64  NLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 103
            L +  ++KFGVTIGD T  EG+GIC+++EV L +++IV
Sbjct: 333 ALSLHGKTKFGVTIGDGTTLEGKGICKKIEVKLPKLTIV 371

[Close]

BLAST of IVF0008399 vs. ExPASy TrEMBL
Match: A0A5A7TH70 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001860 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 5   ELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDELN 64
           EL SL + G  E++L +ILGF++KG MK+RG + G+ +I+LIDS ATHNFIH+ +V+EL 
Sbjct: 316 ELGSLVIKGGSEISLRTILGFTSKGTMKIRGMISGREIIILIDSEATHNFIHRGVVEELA 375

Query: 65  LPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 103
           LP+  ++KFGVTIGD T  EG GIC+ VE+ L E++IV
Sbjct: 376 LPLERKNKFGVTIGDGTALEGNGICKTVEIKLPELTIV 413

[Close]

BLAST of IVF0008399 vs. ExPASy TrEMBL
Match: A0A5D3C142 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001130 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 5   ELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDELN 64
           EL SL + G  E++L +ILGF++KG MK+RG + G+ +I+LIDS ATHNFIH+ +V+EL 
Sbjct: 316 ELGSLVIKGGSEISLRTILGFTSKGTMKIRGMISGREIIILIDSEATHNFIHRGVVEELA 375

Query: 65  LPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 103
           LP+  ++KFGVTIGD T  EG GIC+ VE+ L E++IV
Sbjct: 376 LPLERKNKFGVTIGDGTALEGNGICKTVEIKLPELTIV 413

[Close]

BLAST of IVF0008399 vs. ExPASy TrEMBL
Match: A0A5A7SVA3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00840 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.8e-22
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 4   VELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDEL 63
           VE  +LEV  K E++L +ILGF++KG MKLRG +KG+ +I+LIDS ATHNFIHQ +V EL
Sbjct: 262 VEFETLEVKRKTEISLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIVQEL 321

Query: 64  NLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 103
            L +  ++KFGVTIGD T  EG+GIC+++E  L +++IV
Sbjct: 322 ALSLHGKTKFGVTIGDGTTLEGKGICKKIEAKLPKLTIV 360

[Close]

BLAST of IVF0008399 vs. NCBI nr
Match: KAA0032864.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 3.72e-56
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MQLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLV 60
           M+LVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLI+SIATHNFIHQ+LV
Sbjct: 5   MKLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLINSIATHNFIHQQLV 64

Query: 61  DELNLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 102
           DELNLP IEESKFGVTIGDETMREG GICRRVEVVLV+I IV
Sbjct: 65  DELNLPNIEESKFGVTIGDETMREGSGICRRVEVVLVDIIIV 106

[Close]

BLAST of IVF0008399 vs. NCBI nr
Match: KAA0036971.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21235.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 1.24e-27
Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 2   QLVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVD 61
           ++VEL  +EV   IEV L +I+GF+AKG +KL+G VK + ++V+IDS  +HN IHQRLVD
Sbjct: 51  EIVELKIVEVLEDIEVELRTIMGFTAKGTLKLKGIVKEKGVVVMIDSGTSHN-IHQRLVD 110

Query: 62  ELNLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 102
           EL L I+EE++FGVT+GD T+R G G+C+RVEV L+E++I+
Sbjct: 111 ELGLKIVEEARFGVTVGDGTVRAGWGLCKRVEVKLLELTII 150

[Close]

BLAST of IVF0008399 vs. NCBI nr
Match: TYK01280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 5.76e-26
Identity = 56/99 (56.57%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 4   VELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDEL 63
           VE  +LEV  K E++L +ILGF++KG MKLRG +KG+ +I+LIDS ATHNFIHQ ++ EL
Sbjct: 273 VEFETLEVKRKTEISLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIIQEL 332

Query: 64  NLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 102
            L +  ++KFGVTIGD T  EG+GIC+++EV L +++IV
Sbjct: 333 ALSLHGKTKFGVTIGDGTTLEGKGICKKIEVKLPKLTIV 371

[Close]

BLAST of IVF0008399 vs. NCBI nr
Match: KAA0059036.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK16247.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 6.82e-26
Identity = 54/100 (54.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 3   LVELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDE 62
           +VEL +LEV  + E+ L +++GF AKG MKL+G VKG+ +IVL+DS ATH+FIHQ +V+E
Sbjct: 1   MVELKNLEVSEETEIELKTMMGFVAKGTMKLKGLVKGKEVIVLVDSGATHDFIHQAVVEE 60

Query: 63  LNLPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 102
           +N+ I +++ FGVTI + T R GRG+C+RVE+ L E+ IV
Sbjct: 61  VNIIIEKDTTFGVTIENGTNRRGRGLCKRVELKLPELIIV 100

[Close]

BLAST of IVF0008399 vs. NCBI nr
Match: TYK05651.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 9.40e-26
Identity = 55/98 (56.12%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 5   ELTSLEVPGKIEVALLSILGFSAKGVMKLRGWVKGQHLIVLIDSIATHNFIHQRLVDELN 64
           EL SL + G  E++L +ILGF++KG MK+RG + G+ +I+LIDS ATHNFIH+ +V+EL 
Sbjct: 316 ELGSLVIKGGSEISLRTILGFTSKGTMKIRGMISGREIIILIDSEATHNFIHRGVVEELA 375

Query: 65  LPIIEESKFGVTIGDETMREGRGICRRVEVVLVEISIV 102
           LP+  ++KFGVTIGD T  EG GIC+ VE+ L E++IV
Sbjct: 376 LPLERKNKFGVTIGDGTALEGNGICKTVEIKLPELTIV 413

[Close]

BLAST of IVF0008399 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 21/71 (29.58%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 31  MKLRGWVKGQHLIVLIDSIATHNFIHQRLVDELNLPIIEESKFGVTIGDETMREGRGICR 90
           M+  G++    ++V+IDS AT+NFI   L   L LP    ++  V +G     +  G C 
Sbjct: 284 MRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLGQRQCIQTIGTCF 343

Query: 91  RVEVVLVEISI 102
            + +++ E+ I
Sbjct: 344 GINLLVQEVEI 354

The following BLAST results are available for this feature:

BLAST of IVF0008399 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNT7	1.8e-43	93.14	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BQE6	1.7e-22	56.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TH70	2.2e-22	56.12	DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C142	2.2e-22	56.12	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SVA3	3.8e-22	56.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0008399 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032864.1	3.72e-56	93.14	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036971.1	1.24e-27	56.44	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21235.1 ty3-gyp...	[more]
TYK01280.1	5.76e-26	56.57	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059036.1	6.82e-26	54.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK16247.1 ty3-gyp...	[more]
TYK05651.1	9.40e-26	56.12	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G30770.1	7.9e-04	29.58	Eukaryotic aspartyl protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 23..103 e-value: 1.0E-6 score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008399.2	IVF0008399.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity