IVF0021279 (gene) Melon (IVF77) v1

Overview


Name	IVF0021279
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposase
Location	chr08: 14664859 .. 14665086 (-)
RNA-Seq Expression	IVF0021279
Synteny	IVF0021279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGGATAAACTGATTTTAGAGGTTGAAGTTCTGAAAAATATGTGGAAAAAGAAGGAAAGGGCAACAGTGGAACCAAATGAAACCATACAAATGTATGAGAATAATGAGAATGATGAAGGTGAAGGTAATAGAAATAATGGTAAAGAAAGGGGAATGAAGGATAAAGGAGAACAGGATGGGAAATCTCGAAATGAAAGTGAAGGAAAAATGATCAACAAGTAG

mRNA sequence

ATGAAATTGGATAAACTGATTTTAGAGGTTGAAGTTCTGAAAAATATGTGGAAAAAGAAGGAAAGGGCAACAGTGGAACCAAATGAAACCATACAAATGTATGAGAATAATGAGAATGATGAAGGTGAAGGTAATAGAAATAATGGTAAAGAAAGGGGAATGAAGGATAAAGGAGAACAGGATGGGAAATCTCGAAATGAAAGTGAAGGAAAAATGATCAACAAGTAG

Coding sequence (CDS)

ATGAAATTGGATAAACTGATTTTAGAGGTTGAAGTTCTGAAAAATATGTGGAAAAAGAAGGAAAGGGCAACAGTGGAACCAAATGAAACCATACAAATGTATGAGAATAATGAGAATGATGAAGGTGAAGGTAATAGAAATAATGGTAAAGAAAGGGGAATGAAGGATAAAGGAGAACAGGATGGGAAATCTCGAAATGAAAGTGAAGGAAAAATGATCAACAAGTAG

Protein sequence

MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQDGKSRNESEGKMINK

Homology

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BLAST of IVF0021279 vs. ExPASy TrEMBL
Match: A0A5D3DV63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00030 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           MKLDKLILEVE LK+M K+KER TVE NETIQ  ENNEND GEG+RNNG+E GM+DKGEQ
Sbjct: 158 MKLDKLILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGEQ 217

Query: 61  DGKSRNESEGK 72
           DGKS NESEGK
Sbjct: 218 DGKSGNESEGK 228

[Close]

BLAST of IVF0021279 vs. ExPASy TrEMBL
Match: A0A5A7UQS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001240 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           MKLDKLILEVE LK+M K+KER TVE NETIQ  ENNEND GEG+RNNG+E GM+DKGEQ
Sbjct: 196 MKLDKLILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGEQ 255

Query: 61  DGKSRNESEGK 72
           DGKS NESEGK
Sbjct: 256 DGKSGNESEGK 266

[Close]

BLAST of IVF0021279 vs. ExPASy TrEMBL
Match: A0A5A7TCN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001720 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           +KLDKL+LE+E  KN+ K+KE ATVEPNE +Q  EN+END G+G RNNG+E GM DKG Q
Sbjct: 99  VKLDKLLLEIEGPKNLLKEKESATVEPNENMQRDENDENDRGQGVRNNGEESGMGDKGHQ 158

[Close]

BLAST of IVF0021279 vs. ExPASy TrEMBL
Match: A0A5D3BRM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00800 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1  MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGK--ERGMKD 57
          +KLDKL+LEV  L+NM K KE A V+PNETIQ  EN+END GE +RNNG+  E G+KD
Sbjct: 10 VKLDKLLLEVGGLRNMLKDKESAIVKPNETIQRDENDENDGGEDDRNNGEEVEGGIKD 67

[Close]

BLAST of IVF0021279 vs. ExPASy TrEMBL
Match: A0A5A7TWM9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.7e-04
Identity = 31/52 (59.62%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKER 53
           +KLDKL+L++E LKN+ K+KE ATVEPNE IQ    +END  +G+RNNG+E+
Sbjct: 369 VKLDKLLLKIEGLKNLLKEKESATVEPNENIQ---RDENDGDQGDRNNGEEK 417

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BLAST of IVF0021279 vs. NCBI nr
Match: TYK27677.1 (uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 3.88e-22
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           MKLDKLILEVE LK+M K+KER TVE NETIQ  ENNEND GEG+RNNG+E GM+DKGEQ
Sbjct: 158 MKLDKLILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGEQ 217

Query: 61  DGKSRNESEGK 71
           DGKS NESEGK
Sbjct: 218 DGKSGNESEGK 228

[Close]

BLAST of IVF0021279 vs. NCBI nr
Match: KAA0055985.1 (uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 7.35e-22
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   MKLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           MKLDKLILEVE LK+M K+KER TVE NETIQ  ENNEND GEG+RNNG+E GM+DKGEQ
Sbjct: 196 MKLDKLILEVEGLKDMLKEKERETVELNETIQRDENNENDGGEGHRNNGEEMGMRDKGEQ 255

Query: 61  DGKSRNESEGK 71
           DGKS NESEGK
Sbjct: 256 DGKSGNESEGK 266

[Close]

BLAST of IVF0021279 vs. NCBI nr
Match: KAA0041214.1 (hypothetical protein E6C27_scaffold128G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.74e-11
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 2   KLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKERGMKDKGEQ 60
           KLDKL+LE+E  KN+ K+KE ATVEPNE +Q  EN+END G+G RNNG+E GM DKG Q
Sbjct: 100 KLDKLLLEIEGPKNLLKEKESATVEPNENMQRDENDENDRGQGVRNNGEESGMGDKGHQ 158

[Close]

BLAST of IVF0021279 vs. NCBI nr
Match: TYK01750.1 (hypothetical protein E5676_scaffold775G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.81e-09
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2  KLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKE 51
          KLDKL+LEV  L+NM K KE A V+PNETIQ  EN+END GE +RNNG+E
Sbjct: 11 KLDKLLLEVGGLRNMLKDKESAIVKPNETIQRDENDENDGGEDDRNNGEE 60

[Close]

BLAST of IVF0021279 vs. NCBI nr
Match: KAA0047364.1 (transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 9.61e-06
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   KLDKLILEVEVLKNMWKKKERATVEPNETIQMYENNENDEGEGNRNNGKER 52
           KLDKL+L++E LKN+ K+KE ATVEPNE IQ    +END  +G+RNNG+E+
Sbjct: 370 KLDKLLLKIEGLKNLLKEKESATVEPNENIQR---DENDGDQGDRNNGEEK 417

The following BLAST results are available for this feature:

BLAST of IVF0021279 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0021279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DV63	1.3e-16	80.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQS8	1.3e-16	80.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TCN2	1.7e-08	65.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BRM7	2.3e-05	63.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWM9	9.7e-04	59.62	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00090 PE...	[more]

BLAST of IVF0021279 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27677.1	3.88e-22	80.28	uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa]	[more]
KAA0055985.1	7.35e-22	80.28	uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa]	[more]
KAA0041214.1	1.74e-11	66.10	hypothetical protein E6C27_scaffold128G001720 [Cucumis melo var. makuwa]	[more]
TYK01750.1	3.81e-09	68.00	hypothetical protein E5676_scaffold775G00800 [Cucumis melo var. makuwa]	[more]
KAA0047364.1	9.61e-06	60.78	transposase [Cucumis melo var. makuwa] >TYK14041.1 transposase [Cucumis melo var...	[more]

BLAST of IVF0021279 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021279.2	IVF0021279.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity