IVF0008492 (gene) Melon (IVF77) v1

Overview
NameIVF0008492
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase-like protein
Locationchr08: 12598921 .. 12599196 (+)
RNA-Seq ExpressionIVF0008492
SyntenyIVF0008492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTTCAAAGATGCATGGCAGATGAAAATAAGAACAAGAGTGTGAAGGAAGACCCATGGGGCCAAATTCCTAATAGCATGCAAGGTGGTGAATTTCGCAATGAGAATAGGCATTTAGTAGTGAGAAAATTTCAAAACTCGTTCTCATGTTCCATTCGGATCCAGAATGAGTCATTTGAGGAATATTTTTTAGTAGAGGTTAAGGAAGAGGAAATACTTCAGTATGGATGGAGAATGTTCCTCAAAGAAAATAGGCAACTAGACCGAGTCTAA

mRNA sequence

ATGAGAGTTCAAAGATGCATGGCAGATGAAAATAAGAACAAGAGTGTGAAGGAAGACCCATGGGGCCAAATTCCTAATAGCATGCAAGGTGGTGAATTTCGCAATGAGAATAGGCATTTAGTAGTGAGAAAATTTCAAAACTCGTTCTCATGTTCCATTCGGATCCAGAATGAGTCATTTGAGGAATATTTTTTAGTAGAGGTTAAGGAAGAGGAAATACTTCAGTATGGATGGAGAATGTTCCTCAAAGAAAATAGGCAACTAGACCGAGTCTAA

Coding sequence (CDS)

ATGAGAGTTCAAAGATGCATGGCAGATGAAAATAAGAACAAGAGTGTGAAGGAAGACCCATGGGGCCAAATTCCTAATAGCATGCAAGGTGGTGAATTTCGCAATGAGAATAGGCATTTAGTAGTGAGAAAATTTCAAAACTCGTTCTCATGTTCCATTCGGATCCAGAATGAGTCATTTGAGGAATATTTTTTAGTAGAGGTTAAGGAAGAGGAAATACTTCAGTATGGATGGAGAATGTTCCTCAAAGAAAATAGGCAACTAGACCGAGTCTAA

Protein sequence

MRVQRCMADENKNKSVKEDPWGQIPNSMQGGEFRNENRHLVVRKFQNSFSCSIRIQNESFEEYFLVEVKEEEILQYGWRMFLKENRQLDRV
Homology
[Close]
BLAST of IVF0008492 vs. ExPASy TrEMBL
Match: A0A5D3CS54 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1275G00380 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.1e-05
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 1   MRVQRCMADENKNKSVKEDPWGQIPNSMQGGEFRNENR 39
           MR++RCMA+E K K VKEDP  Q P+ MQGGE  NENR
Sbjct: 131 MRIERCMANEKKKKVVKEDPCAQTPSRMQGGEHHNENR 168

[Close]
BLAST of IVF0008492 vs. ExPASy TrEMBL
Match: A0A5D3DEF9 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold482G00160 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MRVQRCMADENKNKSVKEDPWGQIPNSMQGGEFRNENRHLV 42
          +RV+RCMADE KNK VKE P GQ  + M+G E RNENR  V
Sbjct: 39 IRVERCMADEKKNKIVKEKPCGQSTSGMRGSERRNENRRFV 79

[Close]
BLAST of IVF0008492 vs. NCBI nr
Match: TYK14641.1 (hypothetical protein E5676_scaffold1275G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 6.64e-08
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 1   MRVQRCMADENKNKSVKEDPWGQIPNSMQGGEFRNENRHLVV 42
           MR++RCMA+E K K VKEDP  Q P+ MQGGE  NENR   +
Sbjct: 131 MRIERCMANEKKKKVVKEDPCAQTPSRMQGGEHHNENRRYAL 172

[Close]
BLAST of IVF0008492 vs. NCBI nr
Match: TYK21986.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.43e-07
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MRVQRCMADENKNKSVKEDPWGQIPNSMQGGEFRNENRHLV 41
          +RV+RCMADE KNK VKE P GQ  + M+G E RNENR  V
Sbjct: 39 IRVERCMADEKKNKIVKEKPCGQSTSGMRGSERRNENRRFV 79

The following BLAST results are available for this feature:
BLAST of IVF0008492 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CS548.1e-0565.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DEF91.8e-0463.41RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of IVF0008492 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14641.16.64e-0859.52hypothetical protein E5676_scaffold1275G00380 [Cucumis melo var. makuwa][more]
TYK21986.11.43e-0763.41RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa][more]
BLAST of IVF0008492 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008492.2IVF0008492.2mRNA