IVF0003232 (gene) Melon (IVF77) v1

Overview
NameIVF0003232
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pol polyprotein
Locationchr05: 10967157 .. 10967545 (+)
RNA-Seq ExpressionIVF0003232
SyntenyIVF0003232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAGTTGGGAGCCACCTACTATTACTATAAAAGACAAATCTACACAAAACGAGAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

mRNA sequence

ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

Coding sequence (CDS)

ATGAATATGATTAAAGAAGGAGGATCTACTACTCGTCCACCAGTTCTTGATGGCATAAATTATGCTTATTGGAAGGCTCGTATGACAGCTTTTCTCAAATCAATTGACAATAAAACCTGGAAAGCTGTCATCTCCAAATCTGATTGGACTGATGCTGAAGATCAAGCTTCTCTTGGCAACTCTCGTGCCCTTAATGCTATTTATAATGATCAAAATGTATTTAAATTAATAAATACTTGTACATCTGCAAAAGAAGCTTGGAAAATTCTTGAAGTTGCATATGAAGGAACGTCAAAGGTAAAAACTTCTCTATTACAATTGTTGAGTTCGACTGCTTGA

Protein sequence

MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISKSDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTSLLQLLSSTA
Homology
BLAST of IVF0003232 vs. ExPASy TrEMBL
Match: A0A5A7SP99 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00320 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.4e-52
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS               
Sbjct: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60

Query: 61  --KSDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 113
             +SDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS
Sbjct: 61  KRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 120

BLAST of IVF0003232 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 74/132 (56.06%), Postives = 94/132 (71.21%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI                
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -----KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 111
                + DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

BLAST of IVF0003232 vs. ExPASy TrEMBL
Match: Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 74/132 (56.06%), Postives = 94/132 (71.21%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI                
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -----KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 111
                + DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

BLAST of IVF0003232 vs. ExPASy TrEMBL
Match: V9H042 (Gag-protease polyprotein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI                
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPT 60

Query: 61  -----KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 111
                + DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL+  +EGTS
Sbjct: 61  DGLKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

BLAST of IVF0003232 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI                
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -----KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 111
                + DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL+  +EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

BLAST of IVF0003232 vs. NCBI nr
Match: KAA0032368.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31640.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (540), Expect = 7.91e-69
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS               
Sbjct: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVISSWEPPTITIKDKSTP 60

Query: 61  --KSDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 112
             +SDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS
Sbjct: 61  KRESDWTDAEDQASLGNSRALNAIYNDQNVFKLINTCTSAKEAWKILEVAYEGTSKVKTS 120

BLAST of IVF0003232 vs. NCBI nr
Match: NRJ45860.1 (hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi])

HSP 1 Score: 147 bits (372), Expect = 8.38e-43
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           MNM KEGG   RPP+LDG NY YWKARM AFLKS+D++TWKAVI                
Sbjct: 1   MNMEKEGGPVNRPPILDGXNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  -----KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTS 110
                + DWT  ED+ +LGNS+ALNA++N  D+N+F+LINTCT AK+AW+IL+  +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

BLAST of IVF0003232 vs. NCBI nr
Match: KAA0025734.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 2.30e-41
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           M +I+EG S +RPPVLDG NY+YWK RM   +K++D K W+A+++               
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFSIKTLDGKAWRALVAGYEPPMVTMDEVSVL 60

Query: 61  --KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 110
             + DWTD E+QAS+GN+RA+NAI+N  D NVFKLIN+CT+ KEAWKILEVAYEGTSKVK
Sbjct: 61  KPEVDWTDVEEQASVGNARAINAIFNGVDLNVFKLINSCTTTKEAWKILEVAYEGTSKVK 120

BLAST of IVF0003232 vs. NCBI nr
Match: KAA0039062.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 3.76e-41
Identity = 71/120 (59.17%), Postives = 88/120 (73.33%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           M +I+EG S +RPPVLDG NY+YWK RM  F+K++D K W+A++                
Sbjct: 1   MEIIREGPSASRPPVLDGKNYSYWKPRMIFFIKTLDGKAWRALVGGYEPPMITVNGVLVP 60

Query: 61  --KSDWTDAEDQASLGNSRALNAIYNDQ--NVFKLINTCTSAKEAWKILEVAYEGTSKVK 101
             + DWTDAE QAS+GN+RA+NAI+ND   NVFKLIN+CT+AKEAWKILEVAYEGTSKVK
Sbjct: 61  KPEIDWTDAEGQASVGNARAINAIFNDVDLNVFKLINSCTTAKEAWKILEVAYEGTSKVK 120

BLAST of IVF0003232 vs. NCBI nr
Match: KAA0053604.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 2.15e-40
Identity = 73/128 (57.03%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 1   MNMIKEGGSTTRPPVLDGINYAYWKARMTAFLKSIDNKTWKAVIS--------------- 60
           M +IKEG S +RPP+LDG NY+YWK RM  F+K++D K W+A+++               
Sbjct: 1   MEIIKEGPSASRPPILDGKNYSYWKPRMIFFIKTLDGKAWRALMAGYNPPMITVNGVSVP 60

Query: 61  --KSDWTDAEDQASLGNSRALNAIYN--DQNVFKLINTCTSAKEAWKILEVAYEGTSKVK 109
             + DWT+AE+QAS+GN+RALNAI+N  D NVFKLIN C +AKEAWK LEVAYEGTSKVK
Sbjct: 61  KPEVDWTNAEEQASVGNARALNAIFNGVDLNVFKLINFCITAKEAWKTLEVAYEGTSKVK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SP996.4e-5286.05Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G... [more]
Q84VI41.1e-3256.06Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
Q84VH81.1e-3256.06Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
V9H0421.9e-3256.06Gag-protease polyprotein OS=Glycine max OX=3847 PE=2 SV=1[more]
Q84VH61.9e-3256.06Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0032368.17.91e-6986.05gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31640.1 gag-pol polyprotein [... [more]
NRJ45860.18.38e-4356.06hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi][more]
KAA0025734.12.30e-4156.59gag-pol polyprotein [Cucumis melo var. makuwa] >TYK06164.1 gag-pol polyprotein [... [more]
KAA0039062.13.76e-4159.17gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0053604.12.15e-4057.03gag-pol polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 4..108
NoneNo IPR availablePANTHERPTHR34676:SF8MYOSIN-11-LIKEcoord: 4..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003232.1IVF0003232.1mRNA