IVF0021709 (gene) Melon (IVF77) v1

Overview


Name	IVF0021709
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase epsilon chain, chloroplastic
Location	chr05: 336448 .. 336642 (+)
RNA-Seq Expression	IVF0021709
Synteny	IVF0021709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

mRNA sequence

ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

Coding sequence (CDS)

ATGATGAATGGATGGTTAACGATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCCAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTAG

Protein sequence

MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN

Homology

[Close]

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 5.7e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
           + N WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEI EANLRKA+GKRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEAN 65
           IEAN
Sbjct: 113 IEAN 116

[Close]

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q09MH2 (ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK+SDIDPQEAQQTLEI EANLRKA+ KRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKSSDIDPQEAQQTLEIAEANLRKAESKRQTIEAN 116

[Close]

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+ EANLRKA+GKRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEAN 116

[Close]

BLAST of IVF0021709 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-24
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 5   WLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIEAN 64
           WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEI EANLRKA+GKRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEAN 116

[Close]

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A5D3DDV0 (ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00700 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
          MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEAN 65
          IEAN
Sbjct: 61 IEAN 64

[Close]

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-23
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 65
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. NCBI nr
Match: KAA0040079.1 (ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 2.88e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
          MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEAN 64
          IEAN
Sbjct: 61 IEAN 64

[Close]

BLAST of IVF0021709 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. NCBI nr
Match: YP_009752418.1 (CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit epsilon [Trichosanthes wallichiana] >YP_009753711.1 CF1 subunit epsilon [Trichosanthes nervifolia] >QIT04645.1 CF1 subunit epsilon [Trichosanthes wallichiana] >QIT04814.1 CF1 subunit epsilon [Trichosanthes tricuspidata] >QIT05322.1 CF1 subunit epsilon [Trichosanthes nervifolia])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 116 bits (290), Expect = 1.63e-31
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 3   NGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQTIE 62
           +GWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQGKRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  AN 64
           AN
Sbjct: 117 AN 118

[Close]

BLAST of IVF0021709 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-25
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60
           + N WLTMALMGGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEI EANLRKA+GKRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEAN 65
           IEAN
Sbjct: 113 IEAN 116

The following BLAST results are available for this feature:

BLAST of IVF0021709 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZG9	5.7e-26	96.77	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
P09468	1.8e-24	89.06	ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp...	[more]
Q09MH2	9.0e-24	91.67	ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=...	[more]
Q49KZ2	9.0e-24	90.00	ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
A0ZZ41	9.0e-24	91.67	ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp...	[more]

BLAST of IVF0021709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDV0	1.7e-25	100.00	ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A218KG49	2.1e-23	96.77	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=...	[more]
G3ETZ1	2.1e-23	96.77	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ...	[more]
A0A1X9Q1L0	2.1e-23	96.77	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
A0A249RZA2	2.1e-23	96.77	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=...	[more]

BLAST of IVF0021709 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040079.1	2.88e-35	100.00	ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synt...	[more]
YP_009752081.1	1.63e-31	96.77	CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo...	[more]
YP_009752418.1	1.63e-31	96.77	CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit eps...	[more]
ASY96329.1	1.63e-31	96.77	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]	[more]
YP_004841789.1	1.63e-31	96.77	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ...	[more]

BLAST of IVF0021709 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00470.1	1.3e-25	89.06	ATP synthase epsilon chain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	GENE3D	6.10.140.480		coord: 37..64 e-value: 2.8E-13 score: 51.2
None	No IPR available	PANTHER	PTHR13822:SF10	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 3..64
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	GENE3D	2.60.15.10		coord: 2..36 e-value: 1.0E-5 score: 27.5
IPR036771	F0F1 ATP synthase delta/epsilon subunit, N-terminal	SUPERFAMILY	51344	Epsilon subunit of F1F0-ATP synthase N-terminal domain	coord: 3..31
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0021709.2	IVF0021709.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism