IVF0013665 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCT ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGATTTGATCCTCT ATGTTAGGTTTGTTTTACCTCGTTTCACCTATGCGATTCCCCATCCTTTTCTTCAGCACTTTTCTGTGGATTCCTCTTTTTCGTATGAAGCAAGCCATTCTGGGCGTTGTGGCTACTGTTTTTGGCCGGCCCTCCTCCCCACAACATGGAACTGACCTTGTGGTGGTCAGGTCATACGATGAGGATCATGGAGGATCGTCGGAGGAGATTTGCTCCATCTGTTTGACGGAGTTTGGAAGATCAGAAGATTCGGTGTGTAAATTACCGAATTGTGAGCATTTATTTCATTTCAATTGCATCCAGGAATGGATTGACAGGAATCGCTTCACTTGTCCCCTATGTAGATGCTTCTTCTTGGAAGACAACCACAAGATGGACACCAAGTGGAGATTCCTCGTTCCTGATAATCCTTCCTCTCTCTATTACTTCCTGCAATGA MLGLFYLVSPMRFPILFFSTFLWIPLFRMKQAILGVVATVFGRPSSPQHGTDLVVVRSYDEDHGGSSEEICSICLTEFGRSEDSVCKLPNCEHLFHFNCIQEWIDRNRFTCPLCRCFFLEDNHKMDTKWRFLVPDNPSSLYYFLQ Homology
BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 4.7e-12 Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08 Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.1e-08 Identity = 29/75 (38.67%), Postives = 38/75 (50.67%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.2e-08 Identity = 36/130 (27.69%), Postives = 60/130 (46.15%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A5D3BPT9 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00740 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 1.0e-81 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A5A7TXY0 (RING-H2 finger protein ATL18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00410 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 6.5e-81 Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A0A0KFW5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G117180 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67 Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A6J1FTE6 (RING-H2 finger protein ATL18-like OS=Cucurbita moschata OX=3662 GN=LOC111448616 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 7.3e-40 Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0
BLAST of IVF0013665 vs. ExPASy TrEMBL
Match: A0A6J1G855 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita moschata OX=3662 GN=LOC111451622 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.2e-31 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 0
BLAST of IVF0013665 vs. NCBI nr
Match: TYK01060.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]) HSP 1 Score: 311 bits (796), Expect = 4.73e-107 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
BLAST of IVF0013665 vs. NCBI nr
Match: KAA0047798.1 (RING-H2 finger protein ATL18-like [Cucumis melo var. makuwa]) HSP 1 Score: 308 bits (789), Expect = 5.54e-106 Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0
BLAST of IVF0013665 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 172 bits (435), Expect = 5.57e-52 Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0
BLAST of IVF0013665 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 171 bits (434), Expect = 7.90e-52 Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0
BLAST of IVF0013665 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 171 bits (433), Expect = 1.12e-51 Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 0
BLAST of IVF0013665 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein ) HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13 Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 0
BLAST of IVF0013665 vs. TAIR 10
Match: AT5G37250.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0
BLAST of IVF0013665 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B ) HSP 1 Score: 64.3 bits (155), Expect = 9.2e-11 Identity = 26/63 (41.27%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of IVF0013665 vs. TAIR 10
Match: AT5G37270.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10 Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0
BLAST of IVF0013665 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein ) HSP 1 Score: 63.2 bits (152), Expect = 2.0e-10 Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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