IVF0017482 (gene) Melon (IVF77) v1

Overview
NameIVF0017482
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 24967067 .. 24967393 (-)
RNA-Seq ExpressionIVF0017482
SyntenyIVF0017482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGTATTTCCCCTTAACCCTAACCAACTTTTCTCTTTCTCTTAATACATAATACACTCCTATTATCACGTTGCTCTGTTTTTTGAGTTGCAGGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAG

mRNA sequence

ATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAG

Coding sequence (CDS)

ATGCAGTCGAAGATTGGATCTCAAGGTCTTCCTCTCTGTATTTCAGCCTTCACTCTCTCAAATCATTCCCTCTCTACTCAGATAGCAGATCATGATCGAAGAAGGGAAGCCATGAAAACGAGAACGCAAAGATCAAACAACATGAAATACAGGTATTTGGAAGCGATTAGAGAAGGAGATCTTGAGGATTTCGTCAATGAAACCGACTTCATGATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGDLEDFVNETDFMICAAKAA
Homology
BLAST of IVF0017482 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.4e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 79
          LEDFVNETDFMICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

BLAST of IVF0017482 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 79
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

BLAST of IVF0017482 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMK----YRY-LEA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S +       RY ++A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNETDFMICAAKAA 79
          I +GDL D   +T  +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

BLAST of IVF0017482 vs. ExPASy TrEMBL
Match: D7SKV1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKY------------RYL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    +            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNETDFMICAAKAA 79
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

BLAST of IVF0017482 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 6.03e-47
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 78
          LEDFVNETDFMICAAKAA
Sbjct: 61 LEDFVNETDFMICAAKAA 78

BLAST of IVF0017482 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 6.55e-42
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKYRYLEAIREGD 60
          MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRT+RS+NMK+R LEAIREGD
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNMKHRLLEAIREGD 60

Query: 61 LEDFVNETDFMICAAKAA 78
          LEDFVNE D MICAAKAA
Sbjct: 61 LEDFVNENDLMICAAKAA 78

BLAST of IVF0017482 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 5.39e-12
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMK----YRYL-EA 60
          M SK+ S GLPLC+S F+LS+ SLST++ DHDRRREAM+ R   S +       RY+ +A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNETDFMICAAKAA 78
          I +GDL D   +T  +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

BLAST of IVF0017482 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 8.84e-11
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMK----YRYL-EA 60
          M SK+ S GLPLC+S F+LS+  L+T++ DHDRRREAM+ R   S +       RY+ +A
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRPLTTEMEDHDRRREAMRRRRSSSADTGGIGFTRYIIQA 60

Query: 61 IREGDLEDFVNETDFMICAAKAA 78
          I +GDL D   +T  +  AAKAA
Sbjct: 61 IGDGDLHDLCEKTK-LTSAAKAA 82

BLAST of IVF0017482 vs. NCBI nr
Match: XP_034687221.1 (uncharacterized protein LOC117915698 [Vitis riparia] >CBI16279.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 52.8 bits (125), Expect = 9.69e-07
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 6  GSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNMKY------------RYL 65
          GS GLPLC+S  T   H++S ++ADHDRRREAMK +  ++    +            R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDL-EDFVNETDFMICAAKAA 78
          E I+EG++ ED  +    + C AKAA
Sbjct: 68 EQIKEGEVDEDHDHYRPCLACTAKAA 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CSY78.4e-35100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KEP95.7e-3192.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1[more]
A0A6J1L6A33.0e-0850.60uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567... [more]
D7SKV12.6e-0439.53Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
KAA0035320.16.03e-47100.00hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK143... [more]
KGN47309.16.55e-4292.31hypothetical protein Csa_022984 [Cucumis sativus][more]
XP_023006923.15.39e-1250.60uncharacterized protein LOC111499567 [Cucurbita maxima][more]
KAG6605527.18.84e-1148.19hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_034687221.19.69e-0739.53uncharacterized protein LOC117915698 [Vitis riparia] >CBI16279.3 unnamed protein... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017482.1IVF0017482.1mRNA