Pay0007202 (gene) Melon (Payzawat) v1

Overview


Name	Pay0007202
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA repair protein XRCC4
Location	chr01: 1604277 .. 1608600 (+)
RNA-Seq Expression	Pay0007202
Synteny	Pay0007202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACGGTTTCTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACAGAGAAGCTCCATTTTGAAAGGCGAAGTCAAAACAGCTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCAGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGGTTTCATTTCTTAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCTTCTTTCGAGTTTGTTCTCGTATTTTCTTTTTGTTATTACCCCATTTTGCCTGCGACAGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAAAACCGTCGGACTATGTGGCATTGGCCGAACGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTTGTACTTACTCCCTTTCGTTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTGCTCCCTTAGTCGATACTGATGAGGTAATAGAAGATTTTTTGGGTATTGTTCGTTGTATAGGTACTAGGAAATAGACGATCGGCTCACAATTTGGTTTTGATTTCGCCTCTTTGAATGCCTTCATTGTTGTTAAAGAGTAAATTGAATGGAAATCTGAATTCTGGCTGAAAAGTTTTAGCTTCCAGGTCAACTAGTGAGTTAACAGCAATGTGGTAATGGAGTATTGAAAAACAATATTTTAAAAAAATGCAGGTTCAAAACAACCTCTACAAGCTTATATGGAGAATATTTTATACCTAAGACAAGGGAAGAACTTTTGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTTGAGAGATTCTTAAAAGAGTTTGATGTTCTTTTCTTATTTCTTTAAGATGGGAAACTAAAAAGAGAGTACCTTTAAGATGAAGTGAAGTGACATGTGTGCTGTGTGCTGAGGCACTTGCAACAAAAGGATCAACTAAACATATACGAGAATAAAGTACACAATTGGTTGCTTAGTTTGGTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATCGACATGGCCCTTGAACATCTTTGACCATTAATAACTAACGTTAAAATGATTTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATAGTTTAATTTAATAATATATTTTTATGACTAAAAATACTTTTTCCACGTTGCTTCCTCCTATGGTGAATCTTCCCATTGCTCGCCAATGCCCTTCTTATGCATGATTGAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACCTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTATACTATTATATCAGGTTAAGCTTGGTTGAAATTTTTAAATCTACTATAAATTTAGGAATTCAATTATAATCATCAATCTATTTGGGTGAATTTGTTGGTTTCGGTATCTCATATACCAAGTAGGCAACTCTCTGTAGTTTAGGGGTCAAATGTGTAGTTTGTCTATACTCTATTTCACCAGGTTGTGCTTGGTTAAAATTTTTCAGTCTAGTTTAAATTTAAGAATTTGATTATAATCAACAGTCTCTTTGGGTGAACTTGGTGGTTTTGATACAAGAATATTGTGAATTTGGGAGAGGAATTCAGTTATCTAAATATTAAAGTTTGGGTTTTCATTTTAACTTTGGAACATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTTTGAGCATATTTTTCAATGATTAATAGTTGCTTATTGGTGATTTACATGAATGGATTAACAAGATTGACAATTTCCCCTATCCTATTTCATGACCATTGGATTGGAGTTTTTGTTCCAGCTTTGTTTTTCTACATCGAAGGACTTTAAAGTTGAATAGCTCTAGCACATGACTTGTAAAACAATGATCACAGCCCTCTGTTTGCTTCTATTATCTGATTGCTGACTGAACATGTGGATAGTTATTTATCTTTTCCAAGTTTTGATATGGTGTCAGAAACATTAGTTACCATGTAAATTCCGAAGTACATTAATTTATTAAAAAGAGTCTGATTTGAAAGTCTATGAACTCCAAGTCATTCTTTATTTGAAATGTTGATTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGAGTTTTTTCTTAAAGATGTTCAGTTGTCAACTTTTTCTTATAACTTATGCCTGCTTTATTTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGAAAATTTCATATACTTGTGATTTGAACTTCACCCTATCTGTTTTCTTCTTTGTGATCTTGGTCAGTTTGAGACCATTCTGAATTAACTCTTCTTCAGAAATCACGCTACATTTAGCTTCAAAAGTGTAACATGATGCAATAAGTACATTTTCATTTTATCAATGCAGAAAATTTTGTTTCTCGTATTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAACTATTGTTCACATAATTGTGTTCTCTTTATAACATAGTTATATTAACCCAGACTCTAAAGTATCGGAAAAATAAATACTTATTCAATCCTGCAATCAGGAAATATTTCCTTTGGCATTAATCTACTTGTCAGATGTGTTTGTGCTTCATTGATCAAGGTCGGTAGGCTCCAGAAGTTGGTAAATTGGTATCGGGTATTCTGTTTCGATTTTCTCGTTGGAAATTCCCATTTTTGATTCCTTAGTGAAATATAGGATGGAAAAGTTATTTCTTGCTACCCCTATCATAACATGCATTATGGGGAATTTCTTCGATATATTCATAGATTTAGTGACGATGTCAATGTTCCCAGCCCAACACGACTGGGATTGAACTGGTTTATTTGCTTGAGACTTGAGCGAGAGATACAATGCCAAAGATTGCTGATTTGCCCGACTCCTATTTCACATCTGATCAAAACACAAGTTAATTGTATCGATACTGCACTCTCTTTCACATGTGTGGCTGATAGGGTTTGAGGGTTACAAAAAGGATACCCAACACGCCTTCGCTATTTGGAGGGAGCCTACTCATATCTTCGTGATAAATATTTTTGCAGAACGGATGTTGGTTAGAGCTTAAATTTATATTTGCATCAACTTCTATATGCAGTACATATCAAAATGCAATATCAATGAGAGCATAAAAGTAAATTCCCAAATCTCTGTGAGCTCATAATCTTTAATGAATGTTTCATCTATTTGTTAGGCCTCCAATTGTGACTACTTATATTAGAAGGGGTTAGAAAGGAAATGAGTATGAAGCCACTCGTTAGTTGGTTAGAGGTTAGTTTGTTTTGCTTTTTTGGTTAGGCTTGTGTATGGCAGAAGTCTATTAGTAGGTTGTCTTTTGGATGTTGGTTTATCTTTGGCATTTTGTAATAGAGCCATGGTTCTTAGGGAGAGGTACCCGCCTTGAATTGACCGGTTAGCTACTTTGTAATTGTTATTTGCAATCTATACTATCACCGGTGAGACCTGGAGTCTTTACACTACGCACCTCCTATTTCTTATTTGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCGGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAATATATATATTATTGTTGGATTTTGGCTTTGGC

mRNA sequence

GGACGGTTTCTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACAGAGAAGCTCCATTTTGAAAGGCGAAGTCAAAACAGCTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCAGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAAAACCGTCGGACTATGTGGCATTGGCCGAACGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCGGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAATATATATATTATTGTTGGATTTTGGCTTTGGC

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCAGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGATTGCGCGCTGCACAATGGGACCAAAAACCGTCGGACTATGTGGCATTGGCCGAACGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN

Homology

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BLAST of Pay0007202 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 3.8e-72
Identity = 140/230 (60.87%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

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BLAST of Pay0007202 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.1e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Pay0007202 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.1e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Pay0007202 vs. ExPASy TrEMBL
Match: A0A0A0K2L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.9e-122
Identity = 224/233 (96.14%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

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BLAST of Pay0007202 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.4e-109
Identity = 201/233 (86.27%), Postives = 215/233 (92.27%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQ+PSDYV+LAERYLGFQQP S+YGFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Pay0007202 vs. ExPASy TrEMBL
Match: A0A6J1I7A5 (DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQ+PSDYV LAERYLGFQQP S+Y FAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

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BLAST of Pay0007202 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 466.8 bits (1200), Expect = 1.1e-127
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Pay0007202 vs. NCBI nr
Match: XP_004136882.1 (DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_017256 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 3.9e-122
Identity = 224/233 (96.14%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGSIY FADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA ILNFLMDANIRLSEEVVRK QSVERLKAESEKCLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Pay0007202 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida])

HSP 1 Score: 433.3 bits (1113), Expect = 1.3e-117
Identity = 214/233 (91.85%), Postives = 225/233 (96.57%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDA RHTCLKLEVPTNAQP++RSSIFVKGTWNHH FDLSITDGL+AW+CHATEDEV LRA
Sbjct: 1   MDATRHTCLKLEVPTNAQPNDRSSIFVKGTWNHHHFDLSITDGLNAWSCHATEDEVLLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
           AQWDQ+PSDYVALAERYLGFQQPGS+YGF DAGNG +RLSWTFDKEGMKLEWRWKC+PAS
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSVYGFTDAGNGDRRLSWTFDKEGMKLEWRWKCKPAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQ  ERLK+ESE+CLAQSEKICDEKVEFETAIY
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQLFERLKSESERCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]

BLAST of Pay0007202 vs. NCBI nr
Match: KAG6571850.1 (DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405.6 bits (1041), Expect = 2.9e-109
Identity = 201/233 (86.27%), Postives = 215/233 (92.27%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 357 MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 416

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQ+PSDYV+LAERYLGFQQP S+YGFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 417 EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 476

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 477 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 536

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 537 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 589

[Close]

BLAST of Pay0007202 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 405.6 bits (1041), Expect = 2.9e-109
Identity = 201/233 (86.27%), Postives = 215/233 (92.27%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120
            QWDQ+PSDYV+LAERYLGFQQP S+YGFAD GNG KRLSWTF+KEGMKLEWRWKC+ AS
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180
           DNKTTTA IL+FLMDANIRLSEEVVRKTQS E+LK ESEKCLAQSE+IC+EKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 234
           AKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]

BLAST of Pay0007202 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-73
Identity = 140/230 (60.87%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Pay0007202 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 272.7 bits (696), Expect = 2.7e-73
Identity = 140/230 (60.87%), Postives = 179/230 (77.83%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QKPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
            T  IL+FLM+ANIRLSEEVV KT+S E++++E+E+CLAQ EK+CDEK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDD-ESDAEKN 234
           +VLNAKKAKLR  RD+         ++ +EE S+DK ESF+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK-----EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Pay0007202 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 134 MDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV KT+S E++K+E+E+CLAQ EK+CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRDQLSKQTTTGSKLKQEEYSSDKTESF-----DDESDAEK 233
           LR  RD+         +  +EE S+ K ESF     DDE   E+
Sbjct: 61  LRAVRDK-----EDSVRAVEEEESTYKAESFESGRSDDEQSGEE 99

The following BLAST results are available for this feature:

BLAST of Pay0007202 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	3.8e-72	60.87	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of Pay0007202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK69	5.1e-128	99.57	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	5.1e-128	99.57	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A0A0K2L2	1.9e-122	96.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1	[more]
A0A6J1GJL0	1.4e-109	86.27	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]
A0A6J1I7A5	1.2e-108	85.84	DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]

BLAST of Pay0007202 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455175.1	1.1e-127	99.57	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_004136882.1	3.9e-122	96.14	DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_...	[more]
XP_038888651.1	1.3e-117	91.85	DNA repair protein XRCC4 [Benincasa hispida]	[more]
KAG6571850.1	2.9e-109	86.27	DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952201.1	2.9e-109	86.27	DNA repair protein XRCC4 [Cucurbita moschata]	[more]

BLAST of Pay0007202 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	2.7e-73	60.87	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	2.7e-73	60.87	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	2.0e-20	57.69	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 184..207
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..233
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 122..207
IPR038051	XRCC4-like, N-terminal domain superfamily	GENE3D	2.170.210.10		coord: 13..124 e-value: 8.1E-6 score: 27.4
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 125..216 e-value: 5.7E-15 score: 57.1
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 35..228 e-value: 4.7E-15 score: 55.3
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 2..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0007202.1	Pay0007202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0051351	positive regulation of ligase activity
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex
cellular_component	GO:0032807	DNA ligase IV complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity