Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA
mRNA sequence
ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA
Coding sequence (CDS)
ATGAAATGTTGCCTTTTGCATTATATAATATTAGGGGCAACTCCTCTTTCACTACTGTATGGTTTCGAAGCAGTTTTACCTGTTGAAGTTGAGGTGTCATCCCTTAGGGTAATCCAAGAGGTAGAACTAGATGAAGCAAAGTGGGCTCAAGTAAGGTACGAGCAACTGAATTTCATAGAAGAAAGGAGACTGACTGCACTATGTAAAGGACAGTTGTACCAAAAGAAAATAGCACGAGCGTATAACAAAAAAGTTCGACATCACCATTTCCAAGAAGGAGATCTAGTGTTAAAAAGGATCCTGCCTTTTCAAAAGGATCACAAAGGAAAATGGACTCCTAACTACGAGGGACCATATATAGTAAAAAATGCTTTCTCAGGAGGAGCTTTAATTTTGACAAATATGGACGGAGATGACTTGCCTAACCCAATAAGTGCAAACTATGTGAAGAAATACTATGCATGGAGCGACGATTAA
Protein sequence
MKCCLLHYIILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALILTNMDGDDLPNPISANYVKKYYAWSDD
Homology
BLAST of Pay0018287 vs. ExPASy TrEMBL
Match:
A0A5A7UM09 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003650 PE=4 SV=1)
HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0
Query: 11 LGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 70
L ATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG
Sbjct: 157 LWATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 216
Query: 71 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 130
QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL
Sbjct: 217 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 276
Query: 131 ILTNMDGDDLPNPISANYVKKYYAWSDD 159
ILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 277 ILTNMDGDDLPNPISANYVKKYYAWSDD 304
BLAST of Pay0018287 vs. ExPASy TrEMBL
Match:
A0A5D3D9Y9 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00020 PE=4 SV=1)
HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
Query: 9 IILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALC 68
+I GATPLSL+YGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRY+QLNFIEERRLTALC
Sbjct: 243 VISGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERRLTALC 302
Query: 69 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 128
KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG
Sbjct: 303 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 362
Query: 129 ALILTNMDGDDLPNPISANYVKKYYAWSDD 159
ALILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 363 ALILTNMDGDDLPNPISANYVKKYYAWSDD 392
BLAST of Pay0018287 vs. ExPASy TrEMBL
Match:
A0A5A7VAF2 (RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00050 PE=4 SV=1)
HSP 1 Score: 273.9 bits (699), Expect = 4.3e-70
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 261 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 320
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQKKIARAYNKKVRH HFQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 321 LYQKKIARAYNKKVRHRHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 380
Query: 132 LTNMDGDDLPNPISANYVKKYY 154
LTNMDGDDLPNPISA+YVKKYY
Sbjct: 381 LTNMDGDDLPNPISADYVKKYY 402
BLAST of Pay0018287 vs. ExPASy TrEMBL
Match:
A0A5A7SVL0 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00080 PE=4 SV=1)
HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 67 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 126
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQKKIARAYNKKVRH FQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 127 LYQKKIARAYNKKVRHRQFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 186
Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
LTNMDGDDLPNPISA+YVKKYYA
Sbjct: 187 LTNMDGDDLPNPISADYVKKYYA 209
BLAST of Pay0018287 vs. ExPASy TrEMBL
Match:
A0A151RXD7 (Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_031171 PE=4 SV=1)
HSP 1 Score: 218.8 bits (556), Expect = 1.6e-53
Identity = 101/143 (70.63%), Postives = 122/143 (85.31%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
GATP SL+YG EAVLP+EVE+ SLRV+ E +L+EA+W Q+RY+QLN IEE+RL ALC GQ
Sbjct: 137 GATPYSLVYGMEAVLPIEVEIPSLRVLAEAKLEEAEWVQIRYDQLNLIEEKRLNALCHGQ 196
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQK++ RAY+KKVR FQEGDLVLK+ILP QKDH+GKWTPNYEGPY+VK F GGALI
Sbjct: 197 LYQKRVKRAYDKKVRPREFQEGDLVLKKILPNQKDHRGKWTPNYEGPYVVKKEFLGGALI 256
Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
LTNMDG+DL P++ + VKKY+A
Sbjct: 257 LTNMDGEDLSLPVNFDAVKKYFA 279
BLAST of Pay0018287 vs. NCBI nr
Match:
TYK20386.1 (Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
Query: 9 IILGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALC 68
+I GATPLSL+YGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRY+QLNFIEERRLTALC
Sbjct: 243 VISGATPLSLVYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYKQLNFIEERRLTALC 302
Query: 69 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 128
KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG
Sbjct: 303 KGQLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGG 362
Query: 129 ALILTNMDGDDLPNPISANYVKKYYAWSDD 159
ALILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 363 ALILTNMDGDDLPNPISANYVKKYYAWSDD 392
BLAST of Pay0018287 vs. NCBI nr
Match:
KAA0054571.1 (Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0
Query: 11 LGATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 70
L ATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG
Sbjct: 157 LWATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKG 216
Query: 71 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 130
QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL
Sbjct: 217 QLYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGAL 276
Query: 131 ILTNMDGDDLPNPISANYVKKYYAWSDD 159
ILTNMDGDDLPNPISANYVKKYYAWSDD
Sbjct: 277 ILTNMDGDDLPNPISANYVKKYYAWSDD 304
BLAST of Pay0018287 vs. NCBI nr
Match:
KAA0065292.1 (RNA-directed DNA polymerase [Cucumis melo var. makuwa])
HSP 1 Score: 273.9 bits (699), Expect = 8.9e-70
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 261 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 320
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQKKIARAYNKKVRH HFQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 321 LYQKKIARAYNKKVRHRHFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 380
Query: 132 LTNMDGDDLPNPISANYVKKYY 154
LTNMDGDDLPNPISA+YVKKYY
Sbjct: 381 LTNMDGDDLPNPISADYVKKYY 402
BLAST of Pay0018287 vs. NCBI nr
Match:
KAA0033219.1 (Pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 131/143 (91.61%), Postives = 138/143 (96.50%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
G+TP SL+YGFEAVLPVEVEV SLRVIQE+ELDEAKWAQVRYEQLNFIEERRLTALC+GQ
Sbjct: 67 GSTPFSLVYGFEAVLPVEVEVPSLRVIQELELDEAKWAQVRYEQLNFIEERRLTALCRGQ 126
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQKKIARAYNKKVRH FQEG+LVLKRILPFQKDH+GKWTPNYEGPYIVK AFSGGALI
Sbjct: 127 LYQKKIARAYNKKVRHRQFQEGNLVLKRILPFQKDHRGKWTPNYEGPYIVKRAFSGGALI 186
Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
LTNMDGDDLPNPISA+YVKKYYA
Sbjct: 187 LTNMDGDDLPNPISADYVKKYYA 209
BLAST of Pay0018287 vs. NCBI nr
Match:
XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])
HSP 1 Score: 223.0 bits (567), Expect = 1.8e-54
Identity = 103/143 (72.03%), Postives = 125/143 (87.41%), Query Frame = 0
Query: 12 GATPLSLLYGFEAVLPVEVEVSSLRVIQEVELDEAKWAQVRYEQLNFIEERRLTALCKGQ 71
GATP SL+YG EAVLP+EVE+ SLRV+ E +LDEA+W + RYEQLNFIEE+RLTAL GQ
Sbjct: 2493 GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGQ 2552
Query: 72 LYQKKIARAYNKKVRHHHFQEGDLVLKRILPFQKDHKGKWTPNYEGPYIVKNAFSGGALI 131
LYQK++ RAYNKKV F+EGDLVLKRILPF KDH+GKWTPNYEGP++VK AFSGGAL+
Sbjct: 2553 LYQKRLMRAYNKKVHPRSFREGDLVLKRILPFLKDHRGKWTPNYEGPFVVKKAFSGGALL 2612
Query: 132 LTNMDGDDLPNPISANYVKKYYA 155
LTNMDG +L NP++++YV++YYA
Sbjct: 2613 LTNMDGVELKNPVNSDYVRRYYA 2635
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UM09 | 1.1e-78 | 99.32 | Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00365... | [more] |
A0A5D3D9Y9 | 1.1e-78 | 97.33 | Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G0002... | [more] |
A0A5A7VAF2 | 4.3e-70 | 92.25 | RNA-directed DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7SVL0 | 1.3e-69 | 91.61 | Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0008... | [more] |
A0A151RXD7 | 1.6e-53 | 70.63 | Pol polyprotein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_031171 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |