Pay0019982 (gene) Melon (Payzawat) v1

Overview


Name	Pay0019982
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr05: 16675669 .. 16676093 (-)
RNA-Seq Expression	Pay0019982
Synteny	Pay0019982

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGGCAAATGTGGTAGCCGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAGGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGTTTATTGGTGGCGTAACATGA

mRNA sequence

GCAAGGCAAATGTGGTAGCCGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAGGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGTTTATTGGTGGCGTAACATGA

Coding sequence (CDS)

GCAAGGCAAATGTGGTAGCCGATGCTCTTAGTAGGAAAGTGTCACATTCAGCAGCACTTATTACCCGGCAGGCCCCATTGCATCGGGATCTCGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTTACTATGCAGTTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAGAGGATCATTGATGCTCAGAGTAACGATCCTTATCTGGTTGAGAAACGTGGCCTAGCAGAGGCAGGGCAAACGGCTGAGTTCTCGTTATCCTCTGATGGTGGACTGTTGTTTGAGAGACGCCTCTGTGTTCCGTCAGATAGTGCGGTTAAGACAGAATTATTATCTGAGGCGCACAGTTCCCCATTTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGTTTATTGGTGGCGTAACATGA

Protein sequence

KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTKMYQDLKRFIGGVT

Homology

[Close]

BLAST of Pay0019982 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.3e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 1226 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 1285

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 1286 DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1345

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1346 MHPGSTKMYQDLKR 1359

[Close]

BLAST of Pay0019982 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.3e-65
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 919  KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 978

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 979  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1038

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1039 MHPGSTKMYQDLKR 1052

[Close]

BLAST of Pay0019982 vs. ExPASy TrEMBL
Match: A0A5A7UDJ5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.2e-65
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
           KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 229 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 288

Query: 61  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
           DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLC+PSDSAVKTELLSEAHSSPFS
Sbjct: 289 DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCIPSDSAVKTELLSEAHSSPFS 348

Query: 121 MHPGSTKMYQDLKR 135
           MHPGSTKMYQDLKR
Sbjct: 349 MHPGSTKMYQDLKR 362

[Close]

BLAST of Pay0019982 vs. ExPASy TrEMBL
Match: A0A5A7U8T5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001340 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
           KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 799 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 858

Query: 61  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
           DAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 859 DAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 918

Query: 121 MHPGSTKMYQDLKR 135
           MHPGSTKMYQDLKR
Sbjct: 919 MHPGSTKMYQDLKR 932

[Close]

BLAST of Pay0019982 vs. ExPASy TrEMBL
Match: A0A5A7V8L8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 1034 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 1093

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 1094 DAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1153

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1154 MHPGSTKMYQDLKR 1167

[Close]

BLAST of Pay0019982 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 1226 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 1285

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 1286 DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1345

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1346 MHPGSTKMYQDLKR 1359

[Close]

BLAST of Pay0019982 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 919  KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 978

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 979  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1038

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1039 MHPGSTKMYQDLKR 1052

[Close]

BLAST of Pay0019982 vs. NCBI nr
Match: KAA0053280.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
           KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 229 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 288

Query: 61  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
           DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLC+PSDSAVKTELLSEAHSSPFS
Sbjct: 289 DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCIPSDSAVKTELLSEAHSSPFS 348

Query: 121 MHPGSTKMYQDLKR 135
           MHPGSTKMYQDLKR
Sbjct: 349 MHPGSTKMYQDLKR 362

[Close]

BLAST of Pay0019982 vs. NCBI nr
Match: KAA0051744.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
           KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 799 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 858

Query: 61  DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
           DAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 859 DAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 918

Query: 121 MHPGSTKMYQDLKR 135
           MHPGSTKMYQDLKR
Sbjct: 919 MHPGSTKMYQDLKR 932

[Close]

BLAST of Pay0019982 vs. NCBI nr
Match: KAA0062245.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1    KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 60
            KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII
Sbjct: 1034 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGAVTMQLAQLTVQPTLRQRII 1093

Query: 61   DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 120
            DAQSNDPYLVEKRGLAEAGQ AEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS
Sbjct: 1094 DAQSNDPYLVEKRGLAEAGQAAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 1153

Query: 121  MHPGSTKMYQDLKR 135
            MHPGSTKMYQDLKR
Sbjct: 1154 MHPGSTKMYQDLKR 1167

The following BLAST results are available for this feature:

BLAST of Pay0019982 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0019982 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BPI1	6.3e-65	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7U7V9	6.3e-65	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UDJ5	8.2e-65	99.25	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00830 PE...	[more]
A0A5A7U8T5	2.4e-64	99.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5A7V8L8	2.4e-64	99.25	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00080 PE...	[more]

BLAST of Pay0019982 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01613.1	1.3e-64	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	1.3e-64	100.00	pol protein [Cucumis melo var. makuwa]	[more]
KAA0053280.1	1.7e-64	99.25	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051744.1	5.0e-64	99.25	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062245.1	5.0e-64	99.25	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0019982 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 68..136 e-value: 4.5E-5 score: 25.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0019982.1	Pay0019982.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding