Pay0011307 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011307
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA polymerase epsilon subunit 3
Location	chr05: 5668750 .. 5671402 (+)
RNA-Seq Expression	Pay0011307
Synteny	Pay0011307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAAACTACCGGAACGATAATAATGGCGGGAAACAGATTCGAGGAGGCCGCCGGCACTCTTGACGCCGAAGAACCTAGAAGAAGAAGAAGAAGAACACGCCGAGATAGCGTTAAGGAAGTAGAGAAAGATGGAGAAAAAAATAGTTGCCGGAATTGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGTAAGTTCCGAAATCTGCCTTAATATGTTTAGCTCTGAATGAAATTCTATCTATTCTGATGTTCGAAATTAGGGCTCGTTGTTTCTCTGATGTCTGCCTTTAAAATGAAAACGAAACAGATTCAAGAGATAAATCTGTTGCTGTTATGGCGCTTGGGTTAACGAAAATGTTGTTTTGTATTAGTTAATTATTTTGTTTGTATTAACTGGTAGATTTCTAAGCAGGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCAGAATTGGTTAGGCCTCTAAAGGCCTCCCTCAATGGTGAGTGAGCTTCCCACTGCTGTGTTTAACCAATATATCCGGTTGCTCTTTAGTTAAACACATGAATCCTATCTGCTTACCCTTTTTTCACTATTCGGTTTCCGAATGGTCTTTATGGATTTTCTTGATTTCCCTGCCTTAAAAAGCGTTGCATTGCTAGACGTACGATCTCGACTTTAGACAAATTTCGGTAACACTCAGTAGTGTGGTTTAATAAATCCATATGCAAAGAGGACGCTGACATTATAAGACGAATCCTTATCATTTCAAATATACAAGATAAGTGAATTTGACACTATTGCAAGGATAGGACAGGCGTTCAATGTTGAGGATCCTATCTTGGAAAAAGCAAATGACTTCACTTTCTTTGTAAGATACATAAATTACTGTTCTCATTGCCAATTAGGTCTTTTTTGTTTAGTTTTGCGAGAGTGGTTCCCTCTGCCCCTGCCCTTAGGCTGTTCTTTTGGTTCTTTTGATATATATTATTTCTTCTTTTTTTAAAATGAAAGTTCATATTATCAACCCAAAAGAGGCACCATCTCGAGGGACATCCTGGAACCTGCATTTTCTAATATTTAACAATGTAAAAGGTGGATACATGGGCACATGAATATTTAATGCAAGTTTGAATGGCTGCCCTTAGTTTCTGTAGTTGAATTACGCATGTAATATAAGAACGTTGCATGAAATTCAACTCAGGTTCTTCTTAATTTTACTTTATTGAAATTCGATTCTGAGAGGAGCTGGCGAGCTCAAAGAACTAATGCATACCTTTATTAAAGGATTATATGATTTGATTAGATTGAACAAGCTCCTACAAAATAAATCTTCAAGTGTGTACAAATTCTTCGAAATTTTAGTTTGATGTCGTTTTATTTACCAGTATGTACAACTGCTATTGAGTATTGAGATATCGATTGCTATGTTGCAATGAGTAAGAGTTGGGATTTACTTTCTGGATTTCTTTTAGAACTACATACTTAAAGCACTCCAAAGAGTATGTAAAGTGAGCAAGAATATCTGTTTGCTGAGGTGTAAAACAAAACCTTGTTTATGGAATTCTGGAATAGTGGTATTTGACAACGTTCTTAAACTATTTCTGATTTTGTTTCGTAGTTGGATACCATATTTGAGGATCAATATCGAGTCTGATCACACTTTACATTTTTGGATGGAGAGATGCATAAATTCTTAATGCTGCAATTCAAGTTCCCTGCGTACATACTGTCTTATCCGTTCTCTTGATTAGCATTATGTTGTCATTGTTGCTTGCTTATTATTAGGTGAGAAAGGGTCATGTGATAGTATGAATTATTATGTCAAAGGTAGTTTGTTTAAAATGTGAACAATGCTAACCTCTGCCAGCTATGATTTCCAATCTCGTGTTCGCCAATTCATGCTCATAATTATCCAAGATTTGTTTTAAGATAAGCTAGCTGGACCCTTTTAACGATTTATTCATCATGCTGAATACAGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCATCAAGAGAAAAAGAAGTGAAAAAGAAAAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGATGGCGTTGGAGATGATGATAATGATGAAGATGAGGATGAAAACGAGGCCAGTGATAACTGAGAAACATGGTCTGTTTCTCTAATTAGGTACTTGAAATGAGGTTACTCTACACTTGTACGTTATTTATTTTCAAATTAGAAAGAACCAATTTATGAGATTTTATGCGAATCTTCTAGAATATCCTACACTTGCAGGTTGTATATTGTGAACGGCAGCTGCACATTTTAGCAAGTTCTGTATCTCTTTGTTAGCATGGTTGGTTAAGAGAGTTCCCCCCAATACCTTATTAGTTCATTTGTTTACTGCGTTTCTTTTTGTTAGGTTAGGATGCAAAGACATTTAGGTTACATTTACCCTGTGAAAATGCAATAGCTATCATTTCTGTTACCGTCGTGACTATCATTATTGCTAA

mRNA sequence

CCGAAAACTACCGGAACGATAATAATGGCGGGAAACAGATTCGAGGAGGCCGCCGGCACTCTTGACGCCGAAGAACCTAGAAGAAGAAGAAGAAGAACACGCCGAGATAGCGTTAAGGAAGTAGAGAAAGATGGAGAAAAAAATAGTTGCCGGAATTGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCAGAATTGGTTAGGCCTCTAAAGGCCTCCCTCAATGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCATCAAGAGAAAAAGAAGTGAAAAAGAAAAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGATGGCGTTGGAGATGATGATAATGATGAAGATGAGGATGAAAACGAGGCCAGTGATAACTGAGAAACATGGTCTGTTTCTCTAATTAGGTACTTGAAATGAGGTTACTCTACACTTGTACGTTATTTATTTTCAAATTAGAAAGAACCAATTTATGAGATTTTATGCGAATCTTCTAGAATATCCTACACTTGCAGGTTGTATATTGTGAACGGCAGCTGCACATTTTAGCAAGTTCTGTATCTCTTTGTTAGCATGGTTGGTTAAGAGAGTTCCCCCCAATACCTTATTAGTTCATTTGTTTACTGCGTTTCTTTTTGTTAGGTTAGGATGCAAAGACATTTAGGTTACATTTACCCTGTGAAAATGCAATAGCTATCATTTCTGTTACCGTCGTGACTATCATTATTGCTAA

Coding sequence (CDS)

ATGGAGAAAAAAATAGTTGCCGGAATTGAAGAGCTTCCAAAGACTATAGTTCGTCGAGTGGTCAAAGAGAAGCTTTCTCAGTGCTCTCGTGACCAGGACATCTCCGTCAACAAAGACTCGCTTCTTGCGTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGGCGAATGATATATGCAAGGAATCAAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTTTAGAAGATATGGAGTTTCCAGAATTGGTTAGGCCTCTAAAGGCCTCCCTCAATGAATTCAGACGCAAGAATGCTGGAAAGAAGGCAGCTGCATCAAGAGAAAAAGAAGTGAAAAAGAAAAGGAAGGTAGAAGAGCCAACAGTTGAAGGTACAGATGGTGAAAGTATAGATGGCGTTGGAGATGATGATAATGATGAAGATGAGGATGAAAACGAGGCCAGTGATAACTGA

Protein sequence

MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN

Homology

[Close]

BLAST of Pay0011307 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIDGVGDDDNDEDEDENEASD 155
            E  D   D+DNDEDE+  E  +
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEE 138

[Close]

BLAST of Pay0011307 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIDGVGDDDNDEDEDENEASD 155
            E  D   D+DNDEDE+  E  +
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEE 138

[Close]

BLAST of Pay0011307 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+         TD
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK---------TD 129

Query: 132 GESIDGVGDDDNDEDEDENEASD 155
            E  D   D+DNDEDE+  E  +
Sbjct: 130 SEEQDKSRDEDNDEDEERLEEEE 138

[Close]

BLAST of Pay0011307 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 51/143 (35.66%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEP----TV 131
            A DVL A+E+MEF   + PLK +L  +RR   GKK A+ ++K+ K K+  EE      V
Sbjct: 70  NASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQDKSREV 129

Query: 132 EGTDGESIDGVGDDDNDEDEDEN 151
           E  D E +D   DD N+E+E +N
Sbjct: 130 EEEDEERLD--EDDQNEEEEIDN 145

[Close]

BLAST of Pay0011307 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11
Identity = 49/143 (34.27%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ AN+   + KR+T+
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKRKVEEP----TV 131
            A DVL A+E+MEF   V PLK +L  +RR+  GKK A+ ++K+ K K+  EE       
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKDCEEQDKSREE 129

Query: 132 EGTDGESIDGVGDDDNDEDEDEN 151
           E  D E +D   ++ N+E+E +N
Sbjct: 130 EDEDEERLD--EEEQNEEEEVDN 145

[Close]

BLAST of Pay0011307 vs. ExPASy TrEMBL
Match: A0A1S3BNA4 (DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAA REKEVKKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN 156
           KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN
Sbjct: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN 155

[Close]

BLAST of Pay0011307 vs. ExPASy TrEMBL
Match: A0A0A0KEV7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425700 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 9.1e-65
Identity = 146/160 (91.25%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKI  G EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNAGKKAAASREKE KKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDN-----DEDEDENEASDN 156
           KVEEPTVEGTDGESID VG+DDN     DEDEDEN ASD+
Sbjct: 121 KVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

[Close]

BLAST of Pay0011307 vs. ExPASy TrEMBL
Match: A0A6J1DJA4 (DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLNEFRRK+AGKKAAASREKE KKKR
Sbjct: 61  DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENE 152
           K+EEPTVE    ES D VG+DDND D DE+E
Sbjct: 121 KIEEPTVE---DESKDDVGNDDNDNDHDEDE 148

[Close]

BLAST of Pay0011307 vs. ExPASy TrEMBL
Match: A0A6J1K184 (DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.3e-58
Identity = 134/160 (83.75%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESAR+FIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFR KNAGKKAAASR KE KK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIDGV------GDDDNDEDEDENEASD 155
             EEPTVEGTDGES D V       DDDND+DEDE+E  D
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDKD 160

[Close]

BLAST of Pay0011307 vs. ExPASy TrEMBL
Match: A0A6J1H495 (DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 7.0e-57
Identity = 133/160 (83.12%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFR KNAGKKAAASR KE KK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIDGV------GDDDNDEDEDENEASD 155
             EEPTVEGTDGES D V       DD ND+DEDE+E  +
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDEDEDEVEN 160

[Close]

BLAST of Pay0011307 vs. NCBI nr
Match: XP_008449581.1 (PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 2.7e-71
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAA REKEVKKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN 156
           KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN
Sbjct: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN 155

[Close]

BLAST of Pay0011307 vs. NCBI nr
Match: XP_038900596.1 (DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymerase epsilon subunit 3 [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 146/157 (92.99%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKI A IEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT+ 
Sbjct: 1   MEKKIGAAIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSY 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDNDED--EDENEASDN 156
           K+EEPTVEGTDGES+DGVG+DDNDED  EDEN ASD+
Sbjct: 121 KIEEPTVEGTDGESVDGVGNDDNDEDGNEDENGASDD 157

[Close]

BLAST of Pay0011307 vs. NCBI nr
Match: XP_004140162.1 (DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymerase epsilon subunit D [Cucumis sativus] >KGN48033.1 hypothetical protein Csa_004222 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-64
Identity = 146/160 (91.25%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKKI  G EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNAGKKAAASREKE KKKR
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDN-----DEDEDENEASDN 156
           KVEEPTVEGTDGESID VG+DDN     DEDEDEN ASD+
Sbjct: 121 KVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

[Close]

BLAST of Pay0011307 vs. NCBI nr
Match: XP_022152961.1 (DNA polymerase epsilon subunit 3 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLNEFRRK+AGKKAAASREKE KKKR
Sbjct: 61  DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEAKKKR 120

Query: 121 KVEEPTVEGTDGESIDGVGDDDNDEDEDENE 152
           K+EEPTVE    ES D VG+DDND D DE+E
Sbjct: 121 KIEEPTVE---DESKDDVGNDDNDNDHDEDE 148

[Close]

BLAST of Pay0011307 vs. NCBI nr
Match: XP_022995161.1 (DNA polymerase epsilon subunit 3 [Cucurbita maxima])

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-57
Identity = 134/160 (83.75%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESAR+FIHYLSAT+N
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEVKKKR 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFR KNAGKKAAASR KE KK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 KVEEPTVEGTDGESIDGV------GDDDNDEDEDENEASD 155
             EEPTVEGTDGES D V       DDDND+DEDE+E  D
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDKD 160

[Close]

BLAST of Pay0011307 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 139.8 bits (351), Expect = 1.8e-33
Identity = 83/166 (50.00%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 9   IEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKR 68
           ++ELP  IVRRVVK+KLS+CS D D+S++K++LLAF ESARIFIHYLSATAND CK+++R
Sbjct: 8   VDELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARR 67

Query: 69  QTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKA-------------------A 128
           QT+KA+DV KALE+M+F E + PLK+SL +F++KNAGKKA                    
Sbjct: 68  QTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKSSSGT 127

Query: 129 ASREKEVKKKRKVEEPTVEGTDGESIDGVGDDDNDEDEDENEASDN 156
           AS+ KE KK+++ E  T +G     ID     +++E E++N   +N
Sbjct: 128 ASKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEEN 173

[Close]

BLAST of Pay0011307 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +ND+C +  ++TI
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 75

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFR 101
             E VLKAL+ + F E +  + A+  + +
Sbjct: 76  APEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Pay0011307 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +ND+C +  ++TI
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 75

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFR 101
             E VLKAL+ + F E +  + A+  + +
Sbjct: 76  APEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Pay0011307 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +ND+C +  ++TI
Sbjct: 16  LPKATMTKIIKEML-----PPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTI 75

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFR 101
             E VLKAL+ + F E +  + A+  + +
Sbjct: 76  APEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Pay0011307 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-05
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATANDICKESKRQTI 71
           LPK  + +++KE L       D+ V +D+     E    FI+ +S+ +N++C +  ++TI
Sbjct: 16  LPKATMTKIIKEML-----PADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTI 75

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFR 101
             E VLKAL+ + F E V  + A+  + +
Sbjct: 76  APEHVLKALQVLGFGEYVEEVYAAYEQHK 99

The following BLAST results are available for this feature:

BLAST of Pay0011307 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	9.2e-14	35.66	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	9.2e-14	35.66	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	9.2e-14	35.66	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q9JKP7	1.0e-12	35.66	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]
Q642A5	1.1e-11	34.27	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]

BLAST of Pay0011307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNA4	1.3e-71	99.35	DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV...	[more]
A0A0A0KEV7	9.1e-65	91.25	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4257...	[more]
A0A6J1DJA4	2.2e-58	87.42	DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 ...	[more]
A0A6J1K184	8.3e-58	83.75	DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=...	[more]
A0A6J1H495	7.0e-57	83.13	DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 P...	[more]

BLAST of Pay0011307 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449581.1	2.7e-71	99.35	PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo]	[more]
XP_038900596.1	1.7e-65	92.99	DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymer...	[more]
XP_004140162.1	1.9e-64	91.25	DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymeras...	[more]
XP_022152961.1	4.5e-58	87.42	DNA polymerase epsilon subunit 3 [Momordica charantia]	[more]
XP_022995161.1	1.7e-57	83.75	DNA polymerase epsilon subunit 3 [Cucurbita maxima]	[more]

BLAST of Pay0011307 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27470.1	1.8e-33	50.00	nuclear factor Y, subunit B11	[more]
AT5G23090.2	1.2e-05	30.34	nuclear factor Y, subunit B13	[more]
AT5G23090.1	1.2e-05	30.34	nuclear factor Y, subunit B13	[more]
AT5G23090.4	1.2e-05	30.34	nuclear factor Y, subunit B13	[more]
AT5G08190.1	2.1e-05	30.34	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..155 e-value: 1.1E-33 score: 117.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..119
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..80 e-value: 1.3E-9 score: 38.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..155
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 3..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011307.1	Pay0011307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046982	protein heterodimerization activity