Tan0015440 (gene) Snake gourd v1

Overview


Name	Tan0015440
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DEAD-box ATP-dependent RNA helicase 17
Location	LG08: 64739 .. 66113 (+)
RNA-Seq Expression	Tan0015440
Synteny	Tan0015440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTCTGTTAGGGGCTTAAGGGTAAAGATGGATTTTTATCCACTTTCTAAAATTTTGTCTTTCCCACAGGGTCTCGGAACACGAAGGAACCACCGTCAGAAACGCGAAGGCCAAGGTTAGACGCAGTTTACAAGCAGCCGCCTGCAGGACGGGCAGAACTCCTGCGATGAATAGCAGTATCAAATTTATGAACGAAGAGACGAAGGCGACGAGGAAGAAAATGTTTAAAGAGAGTGAAATTTTTGCTTCTTGTACGTTCTCCAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCGAGGTGTGTTGTGTGCCGACTTTGTTCTCTTCCTTCACCGCGTCAATTTATATTCTGCCTTTAATTTATGCTAATCATCATAGAATTACTTTTAATAGTTTTTGATAATTTAGTGTATTCGGTTAATTGAATGGGTGATAATCTTGGCCTGCATCTTCTGGTGTGGGTTCTTCTTCGATTGCGGCAGATAAAATGGGATTTGAAGTTCCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCCTATCCGGGCGTCACGTGTATCCTTTTGTATAACTTCTTTTAATTCATATATACGTGCTTGCAGATGCGTGCGTGTTTATATTTTGATAAGAAACTGATACTATGTTGAAGAAAAAAAAGTCGTACAAAAAGGGGAGATGAGATATCCCCTCAAGGATATTGATTCTCTATCTTTATCACGTGGCAATTAATTGAATGTCGCATCTGTCTTTTGATATTGTAGTGCTTCTGTAAGTTTTTTTAACTTCTCTATACAGTCTTGTTAATGCGGCCACGGGCACGGGCAAAACTGTTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCTGATGGAACTTTTGGTGTGTAACATTAGTAAATTTCTTTTCACGCTCAATTCTGCCTCTGCCTACTTATTTATTTATATATAATTTTTCAAAAAAAGGAAACAAAAGACTTCATTTAGAAACCAATAAACTAGAGACCAATGTCTCCCTTCCTAAAGGGGATCAAACAAACACTTCCATTCTAGGTTTCTCAGAGACGACTTCTAATTAGCCCACAAAATTCTGGATTTCATGTGCAACCACCAACTGAAGAGAATTTGATGCAACCAAGTACACATATCAATAGGACAGGGGCATGCCCAAACGAAACAGAAGAATCTGACAGAGTAAGTTCCATCCCTCTACAATCCAATGGAAGATTGTGTCTAATACATATGCGAGGGAAGTCAATAAAGAAAGGAAAGAACTTAGATTTGTAAGCCATTGTCCAAAGGATGATCTTAGTCCTTTTAAGACCATCCTTTAAGATTATTAAAGAAT

mRNA sequence

ACGGTCTGTTAGGGGCTTAAGGGTAAAGATGGATTTTTATCCACTTTCTAAAATTTTGTCTTTCCCACAGGGTCTCGGAACACGAAGGAACCACCGTCAGAAACGCGAAGGCCAAGGTTAGACGCAGTTTACAAGCAGCCGCCTGCAGGACGGGCAGAACTCCTGCGATGAATAGCAGTATCAAATTTATGAACGAAGAGACGAAGGCGACGAGGAAGAAAATGTTTAAAGAGAGTGAAATTTTTGCTTCTTGTACGTTCTCCAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCCTATCCGGGCGTCACGTTCTTGTTAATGCGGCCACGGGCACGGGCAAAACTGTTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCTGATGGAACTTTTGGTTTCTCAGAGACGACTTCTAATTAGCCCACAAAATTCTGGATTTCATGTGCAACCACCAACTGAAGAGAATTTGATGCAACCAAGTACACATATCAATAGGACAGGGGCATGCCCAAACGAAACAGAAGAATCTGACAGAGTAAGTTCCATCCCTCTACAATCCAATGGAAGATTGTGTCTAATACATATGCGAGGGAAGTCAATAAAGAAAGGAAAGAACTTAGATTTGTAAGCCATTGTCCAAAGGATGATCTTAGTCCTTTTAAGACCATCCTTTAAGATTATTAAAGAAT

Coding sequence (CDS)

ATGAATAGCAGTATCAAATTTATGAACGAAGAGACGAAGGCGACGAGGAAGAAAATGTTTAAAGAGAGTGAAATTTTTGCTTCTTGTACGTTCTCCAGCCTCGGTCTGCACTCTACTTTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCCTTGTACAGGCTCAAGCAATTCCGGCTATCCTATCCGGGCGTCACGTTCTTGTTAATGCGGCCACGGGCACGGGCAAAACTGTTGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCTGATGGAACTTTTGGTTTCTCAGAGACGACTTCTAATTAG

Protein sequence

MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFGFSETTSN

Homology

[Close]

BLAST of Tan0015440 vs. ExPASy Swiss-Prot
Match: Q7XJN0 (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-28
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 11  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRH 70
           ETK   K   K +S +FASC+FSSLGL + L DQL+++MGFE PTLVQAQAIP ILSGR 
Sbjct: 10  ETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRD 69

Query: 71  VLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Sbjct: 70  VLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]

BLAST of Tan0015440 vs. ExPASy Swiss-Prot
Match: Q0DLB9 (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 25  IFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAY 84
           +FASC+F+ LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV AATGTGKT+AY
Sbjct: 19  LFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAY 78

Query: 85  LVPIIHHLQKSDRRIQRADGTF 107
           L PI+H LQ  + R++R DGTF
Sbjct: 79  LAPIVHLLQMREPRVERTDGTF 100

[Close]

BLAST of Tan0015440 vs. ExPASy Swiss-Prot
Match: Q9H8H2 (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-13
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 22  ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKT 81
           + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT
Sbjct: 223 QEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKT 282

Query: 82  VAYLVPIIHHLQKSDRRIQRADGTF 107
           +AY +P++  LQ  + +IQR+DG +
Sbjct: 283 LAYCIPVVQSLQAMESKIQRSDGPY 307

[Close]

BLAST of Tan0015440 vs. ExPASy Swiss-Prot
Match: Q86B47 (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-12
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 18  KMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATG 77
           K  KE+ IF     S+LGLH      L D +     T VQ + IP +L G+ VLV + TG
Sbjct: 317 KPVKET-IFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTG 376

Query: 78  TGKTVAYLVPIIHHLQKSDRRIQRADG 105
           +GKT+AY +P++  LQK   RIQR DG
Sbjct: 377 SGKTLAYALPLVELLQKQQPRIQRKDG 402

[Close]

BLAST of Tan0015440 vs. ExPASy Swiss-Prot
Match: Q0D1K3 (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=prp5 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 31  FSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIH 90
           +S  GL     D + D++G+E PT +Q+QAIPAI+SGR V+  A TG+GKTVA+L+P+  
Sbjct: 551 WSQCGLGVQTLDVI-DRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFR 610

Query: 91  HLQKSDRRIQRADGTFGFSET 112
           H+ K  R ++  +G  G   T
Sbjct: 611 HI-KDQRPLENMEGPIGLIMT 629

[Close]

BLAST of Tan0015440 vs. NCBI nr
Match: XP_022154763.1 (DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQA 60
           MNSS KFMNEE K T+KKM +ESEIFASCTFSSLGLHSTLCDQL++KMGFEVPTLVQAQA
Sbjct: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           I AILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  IRAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 106

[Close]

BLAST of Tan0015440 vs. NCBI nr
Match: XP_022975312.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. NCBI nr
Match: XP_022946513.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_023546293.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. NCBI nr
Match: XP_022946514.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_023546294.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. NCBI nr
Match: XP_022975310.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 3.3e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. ExPASy TrEMBL
Match: A0A6J1DL75 (DEAD-box ATP-dependent RNA helicase 17 OS=Momordica charantia OX=3673 GN=LOC111021936 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.7e-45
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQA 60
           MNSS KFMNEE K T+KKM +ESEIFASCTFSSLGLHSTLCDQL++KMGFEVPTLVQAQA
Sbjct: 1   MNSSTKFMNEEVKTTKKKMGRESEIFASCTFSSLGLHSTLCDQLQEKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           I AILSGRHV+VNAATGTGKT+AYLVPIIHHLQKS RRIQRADGTF
Sbjct: 61  IRAILSGRHVIVNAATGTGKTIAYLVPIIHHLQKSGRRIQRADGTF 106

[Close]

BLAST of Tan0015440 vs. ExPASy TrEMBL
Match: A0A0A0LKK2 (Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 92/107 (85.98%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 1   MNSSIKFMNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQA 60
           M+SSIK+ NE  K T KKM KE E+FASCTF+SLGL STLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFG 108
           IPAILS RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTFG
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFG 107

[Close]

BLAST of Tan0015440 vs. ExPASy TrEMBL
Match: A0A6J1ICQ6 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474473 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. ExPASy TrEMBL
Match: A0A6J1IGD1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474473 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. ExPASy TrEMBL
Match: A0A6J1G427 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450551 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 8   MNEETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSG 67
           MNE  K T KKM KE EIFASCTF+SLGLH+TLCD+LRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]

BLAST of Tan0015440 vs. TAIR 10
Match: AT2G40700.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 5.9e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 11  ETKATRKKMFK-ESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRH 70
           ETK   K   K +S +FASC+FSSLGL + L DQL+++MGFE PTLVQAQAIP ILSGR 
Sbjct: 10  ETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRD 69

Query: 71  VLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 107
           VLVNA TGTGKT+AYL P+IHHLQ    ++ R+ GTF
Sbjct: 70  VLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]

BLAST of Tan0015440 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-12
Identity = 35/86 (40.70%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 9   NEETKATRKKMFKE--SEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILS 68
           N++ K  ++K   E  S +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ 
Sbjct: 88  NDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIK 147

Query: 69  GRHVLVNAATGTGKTVAYLVPIIHHL 93
           G   ++ + TG+GKT+AYL+PI+  +
Sbjct: 148 GHDAVIQSYTGSGKTLAYLLPILSEI 172

[Close]

BLAST of Tan0015440 vs. TAIR 10
Match: AT4G34910.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 10  EETKATRKKMFKESEIFASCTFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRH 69
           EE +  R++  ++ E  A  +F  LGL S L   L  K G E PTL+Q  AIP IL G+ 
Sbjct: 27  EEQRNDREQEEEQKEEEAPKSFEELGLDSRLIRAL-TKKGIEKPTLIQQSAIPYILEGKD 86

Query: 70  VLVNAATGTGKTVAYLVPIIHHLQKSD 97
           V+  A TG+GKT+AYL+P++  L  +D
Sbjct: 87  VVARAKTGSGKTLAYLLPLLQKLFSAD 112

[Close]

BLAST of Tan0015440 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-10
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 30  TFSSLGLHSTLCDQLRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPII 89
           TF   G  S +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKT A+++P+I
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 288

Query: 90  HHLQKSDRRIQRADGTFG 108
            H+      +QR +G  G
Sbjct: 289 VHIM-DQPELQRDEGPIG 304

[Close]

BLAST of Tan0015440 vs. TAIR 10
Match: AT1G59990.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 3   SSIKFMNEETKATRKKMFKESE--IFASCTFS--SLGLHSTLCDQLRDKMGFEVPTLVQA 62
           S  K++     AT  ++ K+     FA  T S  SLGL   +   LRD  GF+ P+L QA
Sbjct: 50  SDRKWVRGFASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDS-GFDRPSLTQA 109

Query: 63  QAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHL 93
             IP+ILSG+ V+V A TG+GKT  YL PII  L
Sbjct: 110 VCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQL 142

The following BLAST results are available for this feature:

BLAST of Tan0015440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJN0	8.3e-28	64.95	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 P...	[more]
Q0DLB9	1.6e-26	64.63	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9H8H2	3.4e-13	40.00	Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 ...	[more]
Q86B47	3.7e-12	44.83	Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN...	[more]
Q0D1K3	3.1e-11	44.44	Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (stra...	[more]

BLAST of Tan0015440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154763.1	1.6e-44	88.68	DEAD-box ATP-dependent RNA helicase 17 [Momordica charantia]	[more]
XP_022975312.1	3.3e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]	[more]
XP_022946513.1	3.3e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_02354...	[more]
XP_022946514.1	3.3e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_02354...	[more]
XP_022975310.1	3.3e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]	[more]

BLAST of Tan0015440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DL75	7.7e-45	88.68	DEAD-box ATP-dependent RNA helicase 17 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LKK2	1.2e-42	85.98	Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=...	[more]
A0A6J1ICQ6	1.6e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1IGD1	1.6e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1G427	1.6e-42	90.91	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of Tan0015440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40700.1	5.9e-29	64.95	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G12770.1	8.5e-12	40.70	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G34910.1	1.9e-11	43.68	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	3.6e-10	39.74	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G59990.1	1.0e-09	44.68	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 55..95 e-value: 6.0E-12 score: 45.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..109 e-value: 8.6E-26 score: 92.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 21..96
None	No IPR available	PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	coord: 13..97
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 29..58 score: 9.761427

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0015440.1	Tan0015440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding