Pay0015040 (gene) Melon (Payzawat) v1

Overview


Name	Pay0015040
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RING-type domain-containing protein
Location	chr01: 4785976 .. 4786356 (-)
RNA-Seq Expression	Pay0015040
Synteny	Pay0015040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA

mRNA sequence

ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA

Coding sequence (CDS)

ATGATAGGTATGGCATTATGTAGAGGTTCAATGTCCATGGCCACCGTTGTCTTCTTAACTTGTGTGTGGATCCCTTTGAGCCAACTGAAGGCAGCCATTGCGAGCATGTTTGACATTCTATCGGGTCGAACATGTCCGATGCTCACGACAATACCGTGTGAGGTGAAACTTCTGGTTTGTAGGTTCGAAGAGCTGCAGCGTGGGGTTGGATCGGAGGAGGAAATTTGCTCCGTTTGCTTGACGGAGTTCACCAGAGAACATTTGGTGAGCCAAATGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAGTTGGCTACAAAGAAACCGATTTACCTGCCCTCTCTGCAGATCCTTCATTGTCCAAGTATTGTGA

Protein sequence

MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFIVQVL

Homology

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BLAST of Pay0015040 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-14
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLL 60
           MI M   R  +  A +VF TCV IPL +LK     A   D                  L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHD-------------DDGYNLV 60

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
              F + ++    EE  C +CL EF  E  V+ + RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 109

Query: 121 RSFIV 124
           RSF++
Sbjct: 121 RSFVL 109

[Close]

BLAST of Pay0015040 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-09
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 57  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 116
           L V +FEEL        E C+VCL EF  E  +  +  C H+FH  C++ W+  ++ TCP
Sbjct: 75  LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCP 134

Query: 117 LCRS 121
           LCR+
Sbjct: 135 LCRT 138

[Close]

BLAST of Pay0015040 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 68  GVGSEEE-----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRS 121
           G G EEE      CSVCL+EF  E  +  +  CSH+FH++CI+ WLQ N   CPLCR+
Sbjct: 125 GEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNA-NCPLCRT 181

[Close]

BLAST of Pay0015040 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 68  GVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCR 120
           G   E   C+VCL EF+ +  +  +  CSH FHL CI++WLQ N  TCPLCR
Sbjct: 135 GAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185

[Close]

BLAST of Pay0015040 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.8e-08
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 45  CPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECI 104
           C +   +  + KL V  F E    +G+ + +C VCL EF  +  + +M  C H+FHL+CI
Sbjct: 77  CLLDVKVELKDKLHVVLFNE---ELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCI 136

Query: 105 ESWLQRNRFTCPLCRSFI 123
             WL  +  TCPLCRS +
Sbjct: 137 HLWLYSHN-TCPLCRSSV 150

[Close]

BLAST of Pay0015040 vs. ExPASy TrEMBL
Match: A0A0A0K513 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLL 60
           MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLL
Sbjct: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
           VCRFEELQR VGSEEEICSVCLTEFTREHLVSQ+HRCSHVFHLECIESWLQRN+FTCPLC
Sbjct: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148

Query: 121 RSFIVQVL 127
           RSFI Q L
Sbjct: 149 RSFIFQPL 156

[Close]

BLAST of Pay0015040 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 11 MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG 70
          MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT+PCEVKLLVCRFEELQRGVG
Sbjct: 1  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG 60

Query: 71 SEEEICSVCLTEFTREHLV 90
          SEEEICS+CLTEFTREHL+
Sbjct: 61 SEEEICSICLTEFTREHLI 79

[Close]

BLAST of Pay0015040 vs. ExPASy TrEMBL
Match: A0A6P6AC29 (RING-H2 finger protein ATL18-like OS=Durio zibethinus OX=66656 GN=LOC111308378 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDIL-----SGRTCPMLTTIPCEV 60
           MI +      +S A ++F TCVWIP  QLK A+  +   +     +  +C ++      V
Sbjct: 1   MISLMCSNSDLSTAALIFYTCVWIPYLQLKKALLRVLGFVFPWYQAEESCQVM-----NV 60

Query: 61  KLLVCRFEELQRGVGSE--------EEICSVCLTEFTREHLVSQMHRCSHVFHLECIESW 120
            L V RFE+L+   GS         EE+CS+CL EF +E +VSQ+H+C H+FH+ CIE W
Sbjct: 61  CLPVARFEDLKLSNGSRGSTNGEEVEEVCSICLVEFEKEDVVSQLHKCGHLFHMNCIEKW 120

Query: 121 LQRNRFTCPLCRSFI 123
           L R++FTCPLCRSF+
Sbjct: 121 LDRDQFTCPLCRSFL 130

[Close]

BLAST of Pay0015040 vs. ExPASy TrEMBL
Match: A0A0D2SLB9 (RING-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G215300 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V 
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-----NVSLPVA 60

Query: 61  RFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 120
           RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C HVFH+ CIE W++R  FTCP
Sbjct: 61  RFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCP 120

Query: 121 LCRSFI 123
           LCRS +
Sbjct: 121 LCRSVL 121

[Close]

BLAST of Pay0015040 vs. ExPASy TrEMBL
Match: A0A5D2M180 (RING-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G240400v1 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           MI +         A ++F TCVWIP  Q K  + S+   +  R+C  +      V L V 
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-----NVSLPVA 60

Query: 61  RFEELQRGVG----SEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 120
           RFE+L+   G    +EEE+CS+CL EF  +  VSQ+ +C HVFH+ CIE W++R  FTCP
Sbjct: 61  RFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFTCP 120

Query: 121 LCRSFI 123
           LCRS +
Sbjct: 121 LCRSVL 121

[Close]

BLAST of Pay0015040 vs. NCBI nr
Match: KAE8645705.1 (hypothetical protein Csa_020389 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 6.1e-37
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT--IPCEVKLL 60
           MIGMALCRGSMSMAT+VFLTCVWIPLSQLKAAI+SMFDILSGRTC MLTT  +PCEVKLL
Sbjct: 38  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 97

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLV 90
           VCRFEELQR VGSEEEICSVCLTEFTREHL+
Sbjct: 98  VCRFEELQRAVGSEEEICSVCLTEFTREHLL 128

[Close]

BLAST of Pay0015040 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.3e-35
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 11 MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVCRFEELQRGVG 70
          MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTT+PCEVKLLVCRFEELQRGVG
Sbjct: 1  MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVPCEVKLLVCRFEELQRGVG 60

Query: 71 SEEEICSVCLTEFTREHLV 90
          SEEEICS+CLTEFTREHL+
Sbjct: 61 SEEEICSICLTEFTREHLI 79

[Close]

BLAST of Pay0015040 vs. NCBI nr
Match: XP_030539517.1 (RING-H2 finger protein ATL18-like [Rhodamnia argentea])

HSP 1 Score: 114.8 bits (286), Expect = 5.5e-22
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           M  +   +  +S A ++F TC+W+PL QL+ AI+ +   +S +  P  ++  C  +L V 
Sbjct: 1   MYCLVYAQSGVSTALLIFYTCMWLPLMQLRRAISRVRAFISCKYEPQESS--CSFQLPVG 60

Query: 61  RFEELQRGVGSEEE------ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFT 120
           RF++LQ+  G EEE       CS+CL ++  E LVS++HRC HVFHL+CIE WL+R++FT
Sbjct: 61  RFQDLQKPFGEEEEEGDHEKTCSICLVDYEGEDLVSKLHRCGHVFHLDCIERWLERSQFT 120

Query: 121 CPLCRSFIVQV 126
           CPLCR  +  V
Sbjct: 121 CPLCRKLVFDV 129

[Close]

BLAST of Pay0015040 vs. NCBI nr
Match: XP_010027388.2 (RING-H2 finger protein ATL18 [Eucalyptus grandis])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 53/132 (40.15%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           M  +   +  +S A ++F TC+W+PL QL+ A++ +   +  +  P   +  C  +L V 
Sbjct: 1   MYCLVYAQSGVSTAMLIFYTCMWLPLMQLRIAVSRVLAFVFCKYQPQERS--CSFQLPVG 60

Query: 61  RFEELQRGVGSE-------EEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF 120
           RF++LQ+  G E       E+ CS+CL ++  EHLVS++HRC HVFH++CIE WL+R++F
Sbjct: 61  RFQDLQKSGGEEEKEDGDHEKTCSICLVDYEGEHLVSKLHRCGHVFHMDCIERWLERSQF 120

Query: 121 TCPLCRSFIVQV 126
           TCPLCR  +  V
Sbjct: 121 TCPLCRKLVFDV 130

[Close]

BLAST of Pay0015040 vs. NCBI nr
Match: KAF8020737.1 (hypothetical protein BT93_G1238 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 53/132 (40.15%), Postives = 82/132 (62.12%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTIPCEVKLLVC 60
           M  +      +S A ++F TC+W+PL QL+ A+  +   +S +  P  ++  C  +L V 
Sbjct: 1   MYCLVYAHSGVSTAVLIFYTCMWLPLMQLRGAVFRVLAFVSHKYEPRESS--CTFQLPVG 60

Query: 61  RFEELQRG-------VGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRF 120
           RF++LQ+         G  E+ CS+CL ++  EHLVS++HRC HVFH++CIE WL+R++F
Sbjct: 61  RFQDLQKSGAEEEKEDGDHEKTCSICLVDYEGEHLVSKLHRCGHVFHMDCIERWLERSQF 120

Query: 121 TCPLCRSFIVQV 126
           TCPLCR  +  V
Sbjct: 121 TCPLCRKLVFDV 130

[Close]

BLAST of Pay0015040 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 7.0e-15
Identity = 47/125 (37.60%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 1   MIGMALCRGSMSMATVVFLTCVWIPLSQLK--AAIASMFDILSGRTCPMLTTIPCEVKLL 60
           MI M   R  +  A +VF TCV IPL +LK     A   D                  L+
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHD-------------DDGYNLV 60

Query: 61  VCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLC 120
              F + ++    EE  C +CL EF  E  V+ + RC+H+FH+ CIE WL R   TCPLC
Sbjct: 61  GVMFGDKEK---EEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 109

Query: 121 RSFIV 124
           RSF++
Sbjct: 121 RSFVL 109

[Close]

BLAST of Pay0015040 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 57  LLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCP 116
           L V +FEEL        E C+VCL EF  E  +  +  C H+FH  C++ W+  ++ TCP
Sbjct: 75  LPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCP 134

Query: 117 LCRS 121
           LCR+
Sbjct: 135 LCRT 138

[Close]

BLAST of Pay0015040 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-10
Identity = 33/109 (30.28%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 24  IPLSQLKAAIASMFDILSGRTCPMLTTIP------CEVKLLVCRFEELQRGVGSEEE--- 83
           + ++ LK  + S+F I++  T   +             ++ + +F+ L   +  EEE   
Sbjct: 5   VSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEEEEKG 64

Query: 84  -ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRNRFTCPLCRSFI 123
             C VCL  F  E  VS++  C H FH  C+++W   N  TCPLCRS +
Sbjct: 65  VECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSIL 113

[Close]

BLAST of Pay0015040 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 28/71 (39.44%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 56  KLLVCRFEELQRGVGSEEE----ICSVCLTEFTREHLVSQMHRCSHVFHLECIESWLQRN 115
           ++ +  FE L    GS  E     C VCL  F  E  VS++  C H FH  C++ W   N
Sbjct: 63  RISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFHSACLDKWFGNN 122

Query: 116 RFTCPLCRSFI 123
             TCPLCRS +
Sbjct: 123 HTTCPLCRSIL 133

[Close]

BLAST of Pay0015040 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 43  RTCPMLTTIPCEVKLLVCRFEELQRGVGSEEEICSVCLTEFTREHLVSQMHRCSHVFHLE 102
           RT  +  T+   +K  VC++ +    V  E   CSVCL+EF  E  +  + +C H FHL 
Sbjct: 188 RTIGLNPTVISSIK--VCQYSKKDGVV--EGTDCSVCLSEFEEEETLRLLPKCKHAFHLY 247

Query: 103 CIESWLQRNRFTCPLCRSFIVQ 125
           CI++WL R+   CPLCR+ IV+
Sbjct: 248 CIDTWL-RSHTNCPLCRAPIVE 264

The following BLAST results are available for this feature:

BLAST of Pay0015040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	9.8e-14	37.60	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9XF92	4.3e-09	40.63	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q9LSW9	1.6e-08	50.00	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9FL07	2.8e-08	50.00	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q84TF5	2.8e-08	38.46	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]

BLAST of Pay0015040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K513	1.2e-59	91.41	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 P...	[more]
A0A5D3D5G1	2.1e-35	96.20	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6P6AC29	1.3e-21	42.22	RING-H2 finger protein ATL18-like OS=Durio zibethinus OX=66656 GN=LOC111308378 P...	[more]
A0A0D2SLB9	5.0e-21	42.06	RING-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G...	[more]
A0A5D2M180	5.0e-21	42.06	RING-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D0...	[more]

BLAST of Pay0015040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645705.1	6.1e-37	91.21	hypothetical protein Csa_020389 [Cucumis sativus]	[more]
KAA0050549.1	4.3e-35	96.20	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_030539517.1	5.5e-22	42.75	RING-H2 finger protein ATL18-like [Rhodamnia argentea]	[more]
XP_010027388.2	1.6e-21	40.15	RING-H2 finger protein ATL18 [Eucalyptus grandis]	[more]
KAF8020737.1	2.1e-21	40.15	hypothetical protein BT93_G1238 [Corymbia citriodora subsp. variegata]	[more]

BLAST of Pay0015040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	7.0e-15	37.60	RING/U-box superfamily protein	[more]
AT3G61460.1	3.0e-10	40.63	brassinosteroid-responsive RING-H2	[more]
AT1G24580.1	8.8e-10	30.28	RING/U-box superfamily protein	[more]
AT1G67856.1	1.1e-09	39.44	RING/U-box superfamily protein	[more]
AT4G33565.1	1.1e-09	40.24	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 76..118 e-value: 7.3E-5 score: 32.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 75..119 e-value: 4.5E-11 score: 42.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 76..119 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 62..125 e-value: 3.2E-16 score: 60.2
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 1..123
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 70..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0015040.1	Pay0015040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity