PI0003975 (gene) Melon (PI 482460) v1

Overview
NamePI0003975
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Locationchr10: 3863134 .. 3865555 (+)
RNA-Seq ExpressionPI0003975
SyntenyPI0003975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAATCTAAGGTGGGGAAACGACAACCAAAGACCCATACAAGCAGCCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCATAATGAAATGAAGCAACAGATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTATGGAAACCCCTTCAAGTGAAGAAAAGGTAACTTCAACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACAACACTTTACCATCTTCTTCTAGAGGTAAATCACATATTTTAGATTATTCTCCATATGTCCCTAAAGCTCCTTTTCCTTCCAGGTTAGCTTCTAAAAAGAAAGAATCACTGAAGGAAGAAGAACTTCTAGAAATATTCAGAAAGGTGCAAATAAACCTACCTCTACTTGATGCAATCCAACAAGTCTCGAGGTATGCGAAATTTCTCAAAGAGTTATGCACCAACAAGAGAAAAATCAAAGAAAAGCCGATGGTAAGTCACAATGTTTCTGCACTTCTTAAAAATTCTATACCTGAAAAACAAAACGATCCAGGTATGTTTTCTCTTCCTTGTGTTATAGGCAATAGGCCAATTTCCCATGCAATGCTTGACCTAGGAGCTTCTATTAATGTCATGCCATATTCTATGTATAAAGATCTAGAATTAAATAATTTGCAAAAGACTAGTGCATGCATCCAACTAGCTGATAGATCTTTTATTTCGCCGCTAGGAATTGTGGAAGATGTACTTGTTAAAGTAGACAAACTAATATTTCCTGCGGATTTCTATATTTTAGAAATGAATGATGCATGTGCAAAACCTTCCCATTCAATTCTATTAGGAAGACCTTTTTTAAGACTGCTAAAGCAATAATTGATGTAGATAAAGGTTGCCTAAGTGTAGAATTTGATGGAGACGTTGTGACATTTAATATTTTTTAATCTATGAAATATCCTGAAGAATGCCTTTCTTTATGCTCCATAGAATTGCATGATGAATTTGATGAATTGCCTATTAATAATGAATTTTCTAAACAAGAGTTAGATGATGAGCTTTGTTTGCATGAGTTTGATTGCAATGTTTGATTGTTTGCATGAGCTTTGTTTCCTTGACATTGTAGTTAGACTTGTTTCCAATGTTTGAATGTTTGAATGGTCCCAAAGAAAACATATGAAGGCTTTGCAACTGCAAAATTGAAACAAGTCTAAAAATAAAAAATGGCTTCAGGAGGAACATAATCGAACTTTTATACAATGGCTACGAGAAGAGGTATTCGGTTCAACCTATTATTTTTGTTACACATGTTACGAAATTGAAATAAGAATTCTCATGGTAGGTATCTAGTGAGCTTGAAGCCAGAAATACTGGAGTTTTAGATAACTTAAGGTGGATCGCTCATGGCCCTCATCCTTTTGTTATTACATATACCGGTTATGCAATAAATGGATGTCGCTATCACACAAAATCTTGTGATAAGGATCATAGTGTACAAAATAGTGGAGTTAGCTTAGTTGCGAAAACAATGCAAGTGTTTAGTTCTAAAGATAAAAATCCCGTCATTGGAGATATGTCATTCTATGGAGTGATACAAGAGATCTGGGAACTAAATTATAATACGTTTAATATTCCTGTGTTTAAATGTGATTGGGTTGATAACAATATTGGTGTAAGGATCGATGAACTTGGTTATGTTTTAGTTGATTTGCGTAGAGTAGGACACAAGTCTGACTCTTTCATACTCGCAAGCCAAGCAAGACAAGTGTTTTATGTGCTTACACCACCACAAAGAGACTTCGAAGATAGATATAATGATGACGAACTTGGTGATACAATACTACAATGTCAAGGAATACCCAATGATATGCCACATGTTGATTTAAATAATGACTTGGATGAGAACATCTCAACATACGTACGATCAGATTGTGAAGGCACATGGATACCCATATAATATTTTACTGGTTCGTTTTCAAATTTTGTAACGAATAGTACCATAAGCTTATCATGTTCATTCATCCCATTTCATTTTTTTATTGCATAAAGTTAATATATCATGTTAATTGTTTCTTGATTTTGATTGACAGGCTTCGATGGACGATTTAAACGAAGACCTTGGTAGTAGTGAGTTGAACGCAACACTTGGAATTGAGGAAGAGGGGGAAATTTTGGGTATTGCAAATGATACCCCGAAACGGAAAAAGAGAACACGAGGGCCTACTATTATGTTCGATGTAACGCGCATTAGAAGTTTGAGAGATAAGAAGGTGGTGAGGTACACAATGAATACGGGGTACTGCTTGGTGAGAATGGAGCGAAGTTGA

mRNA sequence

ATGCCTAATCTAAGGTGGGGAAACGACAACCAAAGACCCATACAAGCAGCCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCATAATGAAATGAAGCAACAGATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTATGGAAACCCCTTCAAGTGAAGAAAAGGCTTCGATGGACGATTTAAACGAAGACCTTGGTAGTAGTGAGTTGAACGCAACACTTGGAATTGAGGAAGAGGGGGAAATTTTGGGTATTGCAAATGATACCCCGAAACGGAAAAAGAGAACACGAGGGCCTACTATTATGTTCGATGTAACGCGCATTAGAAGTTTGAGAGATAAGAAGGTGGTGAGGTACACAATGAATACGGGGTACTGCTTGGTGAGAATGGAGCGAAGTTGA

Coding sequence (CDS)

ATGCCTAATCTAAGGTGGGGAAACGACAACCAAAGACCCATACAAGCAGCCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCATAATGAAATGAAGCAACAGATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGATTATGGAAACCCCTTCAAGTGAAGAAAAGGCTTCGATGGACGATTTAAACGAAGACCTTGGTAGTAGTGAGTTGAACGCAACACTTGGAATTGAGGAAGAGGGGGAAATTTTGGGTATTGCAAATGATACCCCGAAACGGAAAAAGAGAACACGAGGGCCTACTATTATGTTCGATGTAACGCGCATTAGAAGTTTGAGAGATAAGAAGGTGGTGAGGTACACAATGAATACGGGGTACTGCTTGGTGAGAATGGAGCGAAGTTGA

Protein sequence

MPNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDLGSSELNATLGIEEEGEILGIANDTPKRKKRTRGPTIMFDVTRIRSLRDKKVVRYTMNTGYCLVRMERS
Homology
[Close]
BLAST of PI0003975 vs. ExPASy TrEMBL
Match: A0A5D3DS57 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002030 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.3e-31
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 185 PNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAISKMDG 244

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQPDHANVSAISLRSGKI++TP+++EK
Sbjct: 245 KGKLPAQPDHANVSAISLRSGKILDTPTTKEK 276

[Close]
BLAST of PI0003975 vs. ExPASy TrEMBL
Match: A0A5A7V594 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001880 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.3e-31
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 185 PNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAISKMDG 244

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQPDHANVSAISLRSGKI++TP+++EK
Sbjct: 245 KGKLPAQPDHANVSAISLRSGKILDTPTTKEK 276

[Close]
BLAST of PI0003975 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 71/102 (69.61%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SF  EMKQQM+ LT AISK++G
Sbjct: 228 PNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDG 287

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDL 104
           KGKLPAQPD+ANVSAISLRSGKI++TP+++EK       E+L
Sbjct: 288 KGKLPAQPDYANVSAISLRSGKILDTPTTKEKKKETPKEEEL 329

[Close]
BLAST of PI0003975 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 267 PNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDG 326

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQ DHANVSAISLRSGKI++TP+++EK
Sbjct: 327 KGKLPAQLDHANVSAISLRSGKILDTPTTKEK 358

[Close]
BLAST of PI0003975 vs. ExPASy TrEMBL
Match: A0A5D3E1D2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00290 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           P LRWGNDNQ+ IQA S+S+NQGTNLED++KALA NT+SF  EMKQQM+ LT AISK++G
Sbjct: 92  PKLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDG 151

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDLGSSELNATLG 114
           KGKLPAQP+HANVSAISLRSGKI++TP+++EK  +D   E  G+++   TLG
Sbjct: 152 KGKLPAQPNHANVSAISLRSGKILDTPTTKEK-KVDSKKE--GNTQGERTLG 200

[Close]
BLAST of PI0003975 vs. NCBI nr
Match: TYK26581.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 8.8e-31
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 185 PNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAISKMDG 244

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQPDHANVSAISLRSGKI++TP+++EK
Sbjct: 245 KGKLPAQPDHANVSAISLRSGKILDTPTTKEK 276

[Close]
BLAST of PI0003975 vs. NCBI nr
Match: KAA0062400.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 8.8e-31
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 185 PNLRWGNDNQKHTQALFTSSNQGTNLEDIIKALATNTVSFQQEMKQQMTQLTTAISKMDG 244

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQPDHANVSAISLRSGKI++TP+++EK
Sbjct: 245 KGKLPAQPDHANVSAISLRSGKILDTPTTKEK 276

[Close]
BLAST of PI0003975 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-30
Identity = 71/102 (69.61%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SF  EMKQQM+ LT AISK++G
Sbjct: 228 PNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDG 287

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDL 104
           KGKLPAQPD+ANVSAISLRSGKI++TP+++EK       E+L
Sbjct: 288 KGKLPAQPDYANVSAISLRSGKILDTPTTKEKKKETPKEEEL 329

[Close]
BLAST of PI0003975 vs. NCBI nr
Match: TYK29265.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-30
Identity = 75/112 (66.96%), Postives = 94/112 (83.93%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           P LRWGNDNQ+ IQA S+S+NQGTNLED++KALA NT+SF  EMKQQM+ LT AISK++G
Sbjct: 92  PKLRWGNDNQKHIQAPSTSSNQGTNLEDIIKALAINTLSFQQEMKQQMTQLTTAISKMDG 151

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDLGSSELNATLG 114
           KGKLPAQP+HANVSAISLRSGKI++TP+++EK  +D   E  G+++   TLG
Sbjct: 152 KGKLPAQPNHANVSAISLRSGKILDTPTTKEK-KVDSKKE--GNTQGERTLG 200

[Close]
BLAST of PI0003975 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-30
Identity = 70/92 (76.09%), Postives = 84/92 (91.30%), Query Frame = 0 

Query: 2   PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEG 61
           PNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++G
Sbjct: 267 PNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDG 326

Query: 62  KGKLPAQPDHANVSAISLRSGKIMETPSSEEK 94
           KGKLPAQ DHANVSAISLRSGKI++TP+++EK
Sbjct: 327 KGKLPAQLDHANVSAISLRSGKILDTPTTKEK 358

The following BLAST results are available for this feature:
BLAST of PI0003975 vs.
Match NameE-valueIdentityDescription
BLAST of PI0003975 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DS574.3e-3176.09Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V5944.3e-3176.09Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7V0Q71.2e-3069.61Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7VQ601.6e-3076.09Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3E1D21.6e-3066.96Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of PI0003975 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK26581.18.8e-3176.09retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0062400.18.8e-3176.09retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0061138.12.6e-3069.61retrotransposon gag protein [Cucumis melo var. makuwa][more]
TYK29265.13.3e-3066.96retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0067359.13.3e-3076.09retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos... [more]
BLAST of PI0003975 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0003975.1PI0003975.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding