PI0008400.1 (mRNA) Melon (PI 482460) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGATGTTGATGGAGAGGCATATTCCAAAATACTGAAACTCTTGCACAAAGATCTTGCTTGGAGAAAACTATTTTTGCGCATACCTGATTCAAGGAAGAGAGATTTCATAAATAGTCTCTAGATGTCACTTAGGGATGTTTTAGGATTATGTCATTTGATATTAGACTTGAACATGGATTTTGTGTGTTTGACTTTATGGTTTTGTGTTGTTTTTTAACATGGCTACGTTTTTTTATGTTGAGATGGATTTGTACGTTTTTTGTGTTTGATTTAGGGATATACTAGTGAATTGAAATGGATTTGATTCAAGCCAATCATTTTGAGGATTTTGATTCTGACAGCAATGACGATGCTATCAGCATCCTTTTCACTTTATTCTACATGAGTTTGCACAAGGTACAATCTTCTAAACAACCATGTAGAACCTCTGCACTGAGAGGACATGATTATGTAATCAAGTTGTTAAATGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAGTTACATTCATAAGGCTTTGTGAAGATTTGAAATTCAAGACAAATCTGAAAGCATCTAGGTATCTCACCGTTCAAGAAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAGCGATCGTATAGCAACAGAAAGATTTCAATATTTAGGTCATACTATTTCTCTAGCTTTTAACCTTGTTTTAAGGAAGGTTTGCAAGCTTGAAGGAGAAATTATTAGCCCACCCAATATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACTCTTTCTTTAAGGTAATGCATTAA ATGGAGGATGTTGATGGAGAGGCATATTCCAAAATACTGAAACTCTTGCACAAAGATCTTGCTTGGAGAAAACTATTTTTGCGCATACCTGATTCAAGGAAGAGAGATTTCATAAATAGACATGATTATGTAATCAAGTTGTTAAATGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAGTTACATTCATAAGGCTTTGTGAAGATTTGAAATTCAAGACAAATCTGAAAGCATCTAGGTATCTCACCGTTCAAGAAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAGCGATCGTATAGCAACAGAAAGATTTCAATATTTAGGTCATACTATTTCTCTAGCTTTTAACCTTGTTTTAAGGAAGGTTTGCAAGCTTGAAGGAGAAATTATTAGCCCACCCAATATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACTCTTTCTTTAAGGTAATGCATTAA ATGGAGGATGTTGATGGAGAGGCATATTCCAAAATACTGAAACTCTTGCACAAAGATCTTGCTTGGAGAAAACTATTTTTGCGCATACCTGATTCAAGGAAGAGAGATTTCATAAATAGACATGATTATGTAATCAAGTTGTTAAATGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAGTTACATTCATAAGGCTTTGTGAAGATTTGAAATTCAAGACAAATCTGAAAGCATCTAGGTATCTCACCGTTCAAGAAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAGCGATCGTATAGCAACAGAAAGATTTCAATATTTAGGTCATACTATTTCTCTAGCTTTTAACCTTGTTTTAAGGAAGGTTTGCAAGCTTGAAGGAGAAATTATTAGCCCACCCAATATGGACACTGTACCAATGGAGATCGTATCAAATTCAAAATATTACTCTTTCTTTAAGGTAATGCATTAA MEDVDGEAYSKILKLLHKDLAWRKLFLRIPDSRKRDFINRHDYVIKLLNGNDSRCFDCFRMKRVTFIRLCEDLKFKTNLKASRYLTVQEKVAIFLLIISHNESDRIATERFQYLGHTISLAFNLVLRKVCKLEGEIISPPNMDTVPMEIVSNSKYYSFFKVMH Homology
BLAST of PI0008400.1 vs. ExPASy TrEMBL
Match: A0A0A0LCZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398940 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 7.4e-41 Identity = 102/179 (56.98%), Postives = 108/179 (60.34%), Query Frame = 0
BLAST of PI0008400.1 vs. ExPASy TrEMBL
Match: A0A6A4KNZ4 (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22962 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 3.9e-26 Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 0
BLAST of PI0008400.1 vs. ExPASy TrEMBL
Match: A0A4Y7KB65 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_033243 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21 Identity = 57/121 (47.11%), Postives = 81/121 (66.94%), Query Frame = 0
BLAST of PI0008400.1 vs. ExPASy TrEMBL
Match: A0A4Y7LFF5 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_047029 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 6.5e-21 Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0
BLAST of PI0008400.1 vs. ExPASy TrEMBL
Match: A0A1S3E695 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852030 PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20 Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 0
BLAST of PI0008400.1 vs. NCBI nr
Match: KAF3433792.1 (hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]) HSP 1 Score: 161.4 bits (407), Expect = 6.6e-36 Identity = 89/189 (47.09%), Postives = 116/189 (61.38%), Query Frame = 0
BLAST of PI0008400.1 vs. NCBI nr
Match: KAF7148819.1 (hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]) HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35 Identity = 83/210 (39.52%), Postives = 118/210 (56.19%), Query Frame = 0
BLAST of PI0008400.1 vs. NCBI nr
Match: KAF7123090.1 (hypothetical protein RHSIM_Rhsim12G0067000 [Rhododendron simsii]) HSP 1 Score: 159.5 bits (402), Expect = 2.5e-35 Identity = 83/209 (39.71%), Postives = 118/209 (56.46%), Query Frame = 0
BLAST of PI0008400.1 vs. NCBI nr
Match: XP_030481634.1 (protein ALP1-like [Cannabis sativa]) HSP 1 Score: 134.4 bits (337), Expect = 8.7e-28 Identity = 67/170 (39.41%), Postives = 106/170 (62.35%), Query Frame = 0
BLAST of PI0008400.1 vs. NCBI nr
Match: XP_028094390.1 (uncharacterized protein LOC114294454 [Camellia sinensis]) HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27 Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = 0
BLAST of PI0008400.1 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13 Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 0
BLAST of PI0008400.1 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08 Identity = 35/123 (28.46%), Postives = 62/123 (50.41%), Query Frame = 0
BLAST of PI0008400.1 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 6.5e-05 Identity = 31/115 (26.96%), Postives = 51/115 (44.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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