PI0001827 (gene) Melon (PI 482460) v1

Overview


Name	PI0001827
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr05: 10551247 .. 10553581 (+)
RNA-Seq Expression	PI0001827
Synteny	PI0001827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAGGCAAACATTTGTCATTCTGTGCCACTTGGTTAGGACGGTCGCTGGGTTAGCCTCGACCGAAGTCGTGGATGTTGAGGAGATGGTGGCGATGTTCCTTCATGTCCTAGCACACGATGTGAAGAATCGAGTGGTCCAACGGGAGTTCATGCGGTCCGGTGAGACAATTTCAAGACATTTCAACATTGTGTTGATGGCCGTCGTACGTCTTCACGACGAGCTGATAAAAAAACCACAACCGGTCCCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGGTTCGCCTCCTTCGAATTTTACCGTGTATAAATTTTGTAATCGCATGATCTAACAAGGCATTGTTCTTTTGAGGACCAGAACTGTCTTGGTGCACTGGATGACACGTACATCAAGGTGAACGTAGTGGCCACCGAGTGAGCATCGTATAGAACGCGGAAGAGGGAAGTTGCAACGAACGTCCTAGACGTTTGTGACACGAAGGGAAGTTTTGTGTACGTCCTCGCTGGGTGGGAAGGGTCGGTCGCTGACTCGCGCATCCTTCGCGATGCTATTTCAAGACAAAATGGATTGAAGGTCCCCAAGGGTAAATGTGTTCTGTCAATAAGTTAGAATATTTGTGAATAACCTTTCCTCGCAACAAAACTTAATAACTTTCGTACACCATTAGGGTACTACTACTTATGTGACGCGGGTTATCCCAACGCAGAGGGCTTCCTGGCTCCTTATAGAGGGCAGAGGTACCACCTGCAGGAGTGACGTGGCGCAAGGAATGCTCCAACAATGGTAAAAGAATATTTTAACATGAAGCATTCTTCTGCAAGAAACGTCATTGAGAGAGCATTTGGTCTACTTAAAGGTCGATGGGCAATTCTTCGCGGGAAGTCCTACTATCCCGTGGAAGTACAATGTCGGACAATACTGGCATGTTGTCTACTGAACAACTTGATTAATAGGGAGATGACGAGTTCCCAAGGTAATAGATGACGTCGATGAAGTGGACTCAACATACGCAATGACGGGAGGTGACGACATTCAGTACGTTGAGAGCTCGGACGAATGGAGTAAGTGGAGGGACGATAAAGCGGAGGAGATGTTCAATGAATGGCAACTGCGGAATCAGTAGTCACCCTTCCATGCCAATGGGCTTTACTTCTGCATAGATTTACTATGTACTTGCTAATGCTAATGTTTTTTAAATTGTCATCGTTATGTATGAAATTGCCCTCAAAATGGATTAGATGCTTTTTAAATTTTCTGTTAAGCATCCGTTTAATAATTGTCTTTTGTTTCGTGTTTGGTAGAATGACAAGTTCATCGAGGCCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAATGGTACATTCTGACCCAGTTACTTGGCAATGATTATGCGAATGATGTCGGAAAAGCTTCAGGGTGTAGCATACAGGGGACTACGACTATTGACTGTCGGATTAAAACACTCAAGCGCACCTTTCAAGCGATATCGGAGATGCGGGGCCCTAGCTGCAGTGGATTCGGCTGAAATGACGAGGTCAAATGCATAATTGCTGAGAAGGACCTCTTCGACAATTGGGTGAAGGTACGTATTTTTATGGTTATCTAGTATTGGCCCTATTAAAGTAGTGTGTATTCCCGTAATTAATGAATCTAATAAGGTGGTTGTATTTTTATTTTGCACAGAGTCACCTAGCTGCAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTGTCGTATGTGTTCGAAAAAGACCGCGCTACTGGACAACGCACGGAGATGTTCGTAGATGTCGATTCTAATGTGCCCGATGGTTTTGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGACATCCCATGCATGTACAGCCAGGGACATCCCATGTCACCAGATGACGTAGTCGCCTCACGTCCGGAACGGTCGAGTGAGGGTAGGCCGAGTTCCAGCGGTTCGAAAAGGAAGCGGGGGGGGGGGGAGGCATAATGCAGAAGCTCTGGAGATCATTCGCAGCGCCATGGAATATGGGAGTGACCAACTTATGGCAATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCGTGCAGCAGTCGTGGCGCAATTGCAGGCCATCCCTGGACTATCAAGAATCGACAAGGCGCGCTGTATGCAGATACTCACGCGAAACGTGGTCGATATGAAATCGTTTTTGCAAATACCTGACGACTTTAAGCTCGACTACTGCACGGTCATTCTCCAAGACAATGCGTGA

mRNA sequence

ATGGACAGGCAAACATTTGTCATTCTGTGCCACTTGGTTAGGACGGTCGCTGGGTTAGCCTCGACCGAAGTCGTGGATGTTGAGGAGATGGTGGCGATGTTCCTTCATGTCCTAGCACACGATGTGAAGAATCGAGTGGTCCAACGGGAGTTCATGCGGTCCGGTGAGACAATTTCAAGACATTTCAACATTGTGTTGATGGCCGTCGTACGTCTTCACGACGAGCTGATAAAAAAACCACAACCGGTCCCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAATGACAAGTTCATCGAGGCCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAATGAGTCACCTAGCTGCAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTGTCGTATGTGTTCGAAAAAGACCGCGCTACTGGACAACGCACGGAGATGTTCGTAGATGTCGATTCTAATGTGCCCGATGGTTTTGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGACATCCCATGCATGTACAGCCAGGGACATCCCATGTCACCAGATGACGTAGTCGCCTCACGTCCGGAACGGTCGAGTGAGGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCGTGCAGCAGTCGTGGCGCAATTGCAGGCCATCCCTGGACTATCAAGAATCGACAAGGCGCGCTGTATGCAGATACTCACGCGAAACGTGGTCGATATGAAATCGTTTTTGCAAATACCTGACGACTTTAAGCTCGACTACTGCACGGTCATTCTCCAAGACAATGCGTGA

Coding sequence (CDS)

ATGGACAGGCAAACATTTGTCATTCTGTGCCACTTGGTTAGGACGGTCGCTGGGTTAGCCTCGACCGAAGTCGTGGATGTTGAGGAGATGGTGGCGATGTTCCTTCATGTCCTAGCACACGATGTGAAGAATCGAGTGGTCCAACGGGAGTTCATGCGGTCCGGTGAGACAATTTCAAGACATTTCAACATTGTGTTGATGGCCGTCGTACGTCTTCACGACGAGCTGATAAAAAAACCACAACCGGTCCCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAATGACAAGTTCATCGAGGCCCCCCAAGCATACGTGGACCAGAGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGTGGAAATCGGACAATGAGTCACCTAGCTGCAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTGTCGTATGTGTTCGAAAAAGACCGCGCTACTGGACAACGCACGGAGATGTTCGTAGATGTCGATTCTAATGTGCCCGATGGTTTTGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGACATCCCATGCATGTACAGCCAGGGACATCCCATGTCACCAGATGACGTAGTCGCCTCACGTCCGGAACGGTCGAGTGAGGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCGTGCAGCAGTCGTGGCGCAATTGCAGGCCATCCCTGGACTATCAAGAATCGACAAGGCGCGCTGTATGCAGATACTCACGCGAAACGTGGTCGATATGAAATCGTTTTTGCAAATACCTGACGACTTTAAGCTCGACTACTGCACGGTCATTCTCCAAGACAATGCGTGA

Protein sequence

MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISRHFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFENDKFIEAPQAYVDQRRRVNPRGMSGGVGIHGGWKSDNESPSCKGLLNKSFPYYDELSYVFEKDRATGQRTEMFVDVDSNVPDGFGEFVGDGVSNMDIPCMYSQGHPMSPDDVVASRPERSSEEWPKEAREDEYTTRAAVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPDDFKLDYCTVILQDNA

Homology

[Close]

BLAST of PI0001827 vs. ExPASy TrEMBL
Match: A0A5D3DQT0 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00460 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 8.1e-67
Identity = 147/292 (50.34%), Postives = 190/292 (65.07%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+     CHL+RT AGL  T+V+DVEEMVAMF+H+LAHD+KNR++QR+F+R GET+SR
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRR-- 120
           HFN VL+AV+RLHDEL+KK QPV N+CTDPRW+ FEN        +I+   +  D+ R  
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRWE 120

Query: 121 --RVNPRGMSGGVGIHGGWKSDNESPSCKGLLNKSFPYYDELSYVFEKDRATGQRTEMFV 180
               + R +   +  H G KS    P+ KGLLNKSFPYYD+LSYVF KDR T +R++ FV
Sbjct: 121 GSATDSRILKDAISRHNGLKS---HPAAKGLLNKSFPYYDDLSYVFGKDRVTRERSDTFV 180

Query: 181 DVDSNVPDGFGEFVGDGVS-NMDIPCMYSQGHPMSPDDVVASRPE-------------RS 240
           +V SNVP+ F + V  G S + DIP MYSQG  MSPD++   R E             ++
Sbjct: 181 NVGSNVPNVFNDDVALGDSPDQDIPMMYSQGVHMSPDEMFGIRAEVTRSVMELGNDQLKA 240

Query: 241 SEEWPKEAREDEYTTRAAVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFL 269
              WPKE R  E    A VV QLQ IP L   D+A+ MQI+ R+V  ++ FL
Sbjct: 241 IANWPKEKRAIEIELHAEVVKQLQDIPELQSRDRAKLMQIIFRSVEVIEGFL 289

[Close]

BLAST of PI0001827 vs. ExPASy TrEMBL
Match: A0A5A7VGH2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002660 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 147/320 (45.94%), Postives = 190/320 (59.38%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+     CHL+RT AGL  T+V+DVEEMVAMF+H+LAHD+KNR++QR+F+R GET+SR
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRRRV 120
           HFN VL+AV+RLHDEL+KK QPV N+CTDPRW+ FEN        +I+   +  D+ R  
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 NPRG--------------------------------MSGGVGIHGGWKSDNESPSCKGLL 180
             +G                                +   +  H G KS    P+ KGLL
Sbjct: 121 TRKGDVVTNVLGVCDKKGDFVFVLSRWEGSATDSRILKDAISRHNGLKS---HPAAKGLL 180

Query: 181 NKSFPYYDELSYVFEKDRATGQRTEMFVDVDSNVPDGFGEFVGDGVS-NMDIPCMYSQGH 240
           NKSFPYYD+LSYVF KDR T +R++ FV+V SNVP+ F + V  G S + DIP MYSQG 
Sbjct: 181 NKSFPYYDDLSYVFGKDRVTRERSDTFVNVGSNVPNVFNDDVALGDSPDQDIPMMYSQGV 240

Query: 241 PMSPDDVVASRPE-------------RSSEEWPKEAREDEYTTRAAVVAQLQAIPGLSRI 269
            MSPD++   R E             ++   WPKE R  E    A VV QLQ IP L   
Sbjct: 241 HMSPDEMFGIRAEVTRSVMELGNDQLKAIANWPKEKRAIEIELHAEVVKQLQDIPELQSR 300

[Close]

BLAST of PI0001827 vs. ExPASy TrEMBL
Match: A0A5A7TI01 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002840 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-60
Identity = 162/398 (40.70%), Postives = 199/398 (50.00%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RTVAGL S EVVDVEEMVAMFLH++AHDVKNRV+QREFMRSGETISR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFE------------------------ 120
           HFN+VL+ V+RLHD+L+KKPQPV N+CTD RWR FE                        
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEVPISLQLLLAGWEGSAADSRILHD 120

Query: 121 ---NDKFIEAPQ------------------AYVDQRRRVNP-RGMSGGVGIH-------- 180
                  ++ P+                  AY  QR  +   RG+               
Sbjct: 121 AISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKH 180

Query: 181 -----------------------GGWKSDN------------------------------ 240
                                  GGW+SDN                              
Sbjct: 181 SSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKILEKEVFDDWVK 240

Query: 241 ESPSCKGLLNKSFPYYDELSYVFEKDRATGQRTEMFVDVDSNVPDGFGEFVGDGVSNMDI 287
             P+ KGLLNKSF +YDELSYVF KDRAT  R E F +  SN   G+  F+ D   +MD 
Sbjct: 241 SHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAESFANNGSNDLAGYDAFIADAAPDMDF 300

[Close]

BLAST of PI0001827 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 179/577 (31.02%), Postives = 214/577 (37.09%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RT+AGL STEVVDVEEMVAMFLH+LAHDVKNRV+QREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN----------------------- 120
           HFN+VL+AV+RLHDEL+KKPQPVPN CTD RWR FEN                       
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 -------------------------------------------DKFIEAPQAYV------ 180
                                                         ++ P+ Y       
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ---------------------------------------DQRRRVNPRGMS--------- 240
                                                     R V  R            
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 GGVGIH------------------------------------------------------ 287
            G   H                                                      
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAGL 366

[Close]

BLAST of PI0001827 vs. ExPASy TrEMBL
Match: A0A5D3BSN2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00050 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.3e-56
Identity = 163/437 (37.30%), Postives = 201/437 (46.00%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RTVAGL S EVVDVEEMVAMFLH++AHDVKNRV+QREFMRSGETISR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRR-- 120
           HFN+VL+ V+RLHD+L+KKPQPV N+CTD RWR FEN        +I+      D+ R  
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120

Query: 121 ----------------------------------RV------NPRGMSGGVGIH------ 180
                                             R+       P G+    G +      
Sbjct: 121 THKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPNGLKVPKGYYYLVDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKHSSARNTKEEEAGLVECLVELV 240

Query: 241 --GGWKSDN------------------------------ESPSCKGLLNKSFPYYDELSY 287
             GGW+SDN                                P+ KGLLNKSF +YDELSY
Sbjct: 241 NGGGWRSDNGTFHPGYLNQLARVMAFKILEKEVFDDWVKSHPAAKGLLNKSFVHYDELSY 300

[Close]

BLAST of PI0001827 vs. NCBI nr
Match: TYK26031.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-66
Identity = 147/292 (50.34%), Postives = 190/292 (65.07%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+     CHL+RT AGL  T+V+DVEEMVAMF+H+LAHD+KNR++QR+F+R GET+SR
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRR-- 120
           HFN VL+AV+RLHDEL+KK QPV N+CTDPRW+ FEN        +I+   +  D+ R  
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRWE 120

Query: 121 --RVNPRGMSGGVGIHGGWKSDNESPSCKGLLNKSFPYYDELSYVFEKDRATGQRTEMFV 180
               + R +   +  H G KS    P+ KGLLNKSFPYYD+LSYVF KDR T +R++ FV
Sbjct: 121 GSATDSRILKDAISRHNGLKS---HPAAKGLLNKSFPYYDDLSYVFGKDRVTRERSDTFV 180

Query: 181 DVDSNVPDGFGEFVGDGVS-NMDIPCMYSQGHPMSPDDVVASRPE-------------RS 240
           +V SNVP+ F + V  G S + DIP MYSQG  MSPD++   R E             ++
Sbjct: 181 NVGSNVPNVFNDDVALGDSPDQDIPMMYSQGVHMSPDEMFGIRAEVTRSVMELGNDQLKA 240

Query: 241 SEEWPKEAREDEYTTRAAVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFL 269
              WPKE R  E    A VV QLQ IP L   D+A+ MQI+ R+V  ++ FL
Sbjct: 241 IANWPKEKRAIEIELHAEVVKQLQDIPELQSRDRAKLMQIIFRSVEVIEGFL 289

[Close]

BLAST of PI0001827 vs. NCBI nr
Match: KAA0067183.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-63
Identity = 147/320 (45.94%), Postives = 190/320 (59.38%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+     CHL+RT AGL  T+V+DVEEMVAMF+H+LAHD+KNR++QR+F+R GET+SR
Sbjct: 1   MDRRCIPSSCHLLRTTAGLVGTKVIDVEEMVAMFMHILAHDMKNRMIQRKFVRCGETVSR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRRRV 120
           HFN VL+AV+RLHDEL+KK QPV N+CTDPRW+ FEN        +I+   +  D+ R  
Sbjct: 61  HFNFVLLAVLRLHDELLKKSQPVRNSCTDPRWKWFENCLGALDGTYIKVNVSATDRPRYR 120

Query: 121 NPRG--------------------------------MSGGVGIHGGWKSDNESPSCKGLL 180
             +G                                +   +  H G KS    P+ KGLL
Sbjct: 121 TRKGDVVTNVLGVCDKKGDFVFVLSRWEGSATDSRILKDAISRHNGLKS---HPAAKGLL 180

Query: 181 NKSFPYYDELSYVFEKDRATGQRTEMFVDVDSNVPDGFGEFVGDGVS-NMDIPCMYSQGH 240
           NKSFPYYD+LSYVF KDR T +R++ FV+V SNVP+ F + V  G S + DIP MYSQG 
Sbjct: 181 NKSFPYYDDLSYVFGKDRVTRERSDTFVNVGSNVPNVFNDDVALGDSPDQDIPMMYSQGV 240

Query: 241 PMSPDDVVASRPE-------------RSSEEWPKEAREDEYTTRAAVVAQLQAIPGLSRI 269
            MSPD++   R E             ++   WPKE R  E    A VV QLQ IP L   
Sbjct: 241 HMSPDEMFGIRAEVTRSVMELGNDQLKAIANWPKEKRAIEIELHAEVVKQLQDIPELQSR 300

[Close]

BLAST of PI0001827 vs. NCBI nr
Match: KAA0041291.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 5.2e-60
Identity = 162/398 (40.70%), Postives = 199/398 (50.00%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RTVAGL S EVVDVEEMVAMFLH++AHDVKNRV+QREFMRSGETISR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFE------------------------ 120
           HFN+VL+ V+RLHD+L+KKPQPV N+CTD RWR FE                        
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEVPISLQLLLAGWEGSAADSRILHD 120

Query: 121 ---NDKFIEAPQ------------------AYVDQRRRVNP-RGMSGGVGIH-------- 180
                  ++ P+                  AY  QR  +   RG+               
Sbjct: 121 AISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKH 180

Query: 181 -----------------------GGWKSDN------------------------------ 240
                                  GGW+SDN                              
Sbjct: 181 SSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKILEKEVFDDWVK 240

Query: 241 ESPSCKGLLNKSFPYYDELSYVFEKDRATGQRTEMFVDVDSNVPDGFGEFVGDGVSNMDI 287
             P+ KGLLNKSF +YDELSYVF KDRAT  R E F +  SN   G+  F+ D   +MD 
Sbjct: 241 SHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAESFANNGSNDLAGYDAFIADAAPDMDF 300

[Close]

BLAST of PI0001827 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 7.0e-57
Identity = 179/577 (31.02%), Postives = 214/577 (37.09%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RT+AGL STEVVDVEEMVAMFLH+LAHDVKNRV+QREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN----------------------- 120
           HFN+VL+AV+RLHDEL+KKPQPVPN CTD RWR FEN                       
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 -------------------------------------------DKFIEAPQAYV------ 180
                                                         ++ P+ Y       
Sbjct: 187 TRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 ---------------------------------------DQRRRVNPRGMS--------- 240
                                                     R V  R            
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 GGVGIH------------------------------------------------------ 287
            G   H                                                      
Sbjct: 307 RGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEEAGL 366

[Close]

BLAST of PI0001827 vs. NCBI nr
Match: TYK02751.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-56
Identity = 163/437 (37.30%), Postives = 201/437 (46.00%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MDR+ F ILCHL+RTVAGL S EVVDVEEMVAMFLH++AHDVKNRV+QREFMRSGETISR
Sbjct: 1   MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEN------DKFIEAPQAYVDQRR-- 120
           HFN+VL+ V+RLHD+L+KKPQPV N+CTD RWR FEN        +I+      D+ R  
Sbjct: 61  HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120

Query: 121 ----------------------------------RV------NPRGMSGGVGIH------ 180
                                             R+       P G+    G +      
Sbjct: 121 THKGEVATNVLGLCDTKGDFVYVLAGWEGSAADSRILHDAISRPNGLKVPKGYYYLVDAG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 YPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKHSSARNTKEEEAGLVECLVELV 240

Query: 241 --GGWKSDN------------------------------ESPSCKGLLNKSFPYYDELSY 287
             GGW+SDN                                P+ KGLLNKSF +YDELSY
Sbjct: 241 NGGGWRSDNGTFHPGYLNQLARVMAFKILEKEVFDDWVKSHPAAKGLLNKSFVHYDELSY 300

[Close]

BLAST of PI0001827 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 6.2e-11
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           MD+  F  LC L++T   L  T  + +E  +A+FL ++ H+++ R VQ  F  SGETISR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNIVLMAVVRLHDELIKKPQPVPNNCTDPRWRCFEND 99
           HFN VL AV+ +  +  +     PN+ +D      END
Sbjct: 108 HFNNVLNAVIAISKDFFQ-----PNSNSD----TLEND 136

[Close]

BLAST of PI0001827 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 3.3e-04
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 1   MDRQTFVILCHLVRTVAGLASTEVVDVEEMVAMFLHVLAHDVKNRVVQREFMRSGETISR 60
           M  + F  LC ++    GL S+  + ++E VA+FL + A +   R +   F  + ETI R
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNIVLMAVVRLHDELIK 79
            F+ VL A+ RL  E I+
Sbjct: 90  KFHDVLKAMERLAVEYIR 107

The following BLAST results are available for this feature:

BLAST of PI0001827 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQT0	8.1e-67	50.34	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VGH2	1.1e-63	45.94	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TI01	2.5e-60	40.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SWD8	3.4e-57	31.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSN2	1.3e-56	37.30	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0001827 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26031.1	1.7e-66	50.34	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0067183.1	2.3e-63	45.94	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0041291.1	5.2e-60	40.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	7.0e-57	31.02	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02751.1	2.7e-56	37.30	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0001827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	6.2e-11	38.78	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28730.1	3.3e-04	34.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..226
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..97
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0001827.1	PI0001827.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding