PI0021772 (gene) Melon (PI 482460) v1

Overview
NamePI0021772
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr03: 24289838 .. 24295304 (-)
RNA-Seq ExpressionPI0021772
SyntenyPI0021772
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGGTTTAATCTGTTCCAAAATAAATCCCTCTCATAAACCGTCTGATAACCCCCCTCAACCCCTCTCTCAGCCGACTGTAATATGTCTCCAATCCCTCTTTAATCTGTTCCAAAATAAATCCGTCGAAAATCATCCTCATCCACTCGTCTTCTTCCTCCTTTCCGTTCCATTTTCGTTTGTTGTTCAAAGCTAAGCAACTTTAACGTTTTTCCCCATTTTTCCTCTCCGAATCTACATCCATTTTGCTCTTTACGTCTTCCATCCTCGTTGCATTTTCGTCCCCGAAATCTCATCTCCGTCATTGCAAACCATGTCCTTTTCTTCTCCTAATCTCAGATCCTTCAACCCCTTTTCCTTTCGTTGATGGCTGTGTTTCGATGTTGCCTTCGAAATGGTTCTCCTTTCTCTCTCTATGGTTTCGTTGACCGATTGCGTTCCACGCGTTGCCTCCGAAACTTTTCGCCTTCCTCTCTCTGTTTCCATGCATGGCATTGCTGTAACACTTGCCACTCTGACTTCCCCTTGTCGCTTCGACTTCCACTTAGTCGCGCTACACCCAAATACCATAAATTGAATATTGCTACAGCGAAAGAGTTCGGTAGGGGCATCGACGGAGCACAACAGGGGTGACCAGTCTTTTCTATGGTTTGTACACAAACCCTACAAGCCGATGATGAGTTCCTCGTGTGGTCAATCTCTGAATCATTTTTCATTGCTTTTTGTTTGCATATTTGTGTATTTGTATTCTGTTTTTAGACACATTTATTTGGTTTTTCTATGTTTCCATTATATGTTATGAATCATGGTCTTTGTTGTGGCAAAAATTTTTCTTCTTCTCAGATGTCTTGTGCAGATGAAAATGTACTATTCCATCATATACGTTATGTTCTGCAAATTTGGCTGAATTTCGTTCATATTAATTTTGAAAAATATGGTTATACTTGAAATCTCTTCGTTTGGTTATGATGTATTCTCTCGGAACTGTTTGTTTTGGTTTCATTGTAGCTTTTTTCTTGTTTTTTTTCCTTCCAATCTTGTTATTCCCTATTACATTGCAACTTTTTTACTTTGTTGATGTTTGCTCATAATTATTTCACCTCCACATTTCATCTGTGCTTAGGTCCATATTTTAAAACCTATTGTGTACTTTTGTGCTGTTGTATAGAGTGATGTCTTGCATACCTACTTGCATAATTTTTCTATTAGGTCTTCAAAACTCATGTTTGACTATCATTCTTCTTCTGATATGGGTCAATTCCTTCATTTCATCTGATCTTGGTTGTCACAGTGATGGCCATATCCCCTAGTTTTTGGGATACTTGTTGTTTACTGCTTGCTTCTCTAATTTATTGTCATCATCCCTTCACTATAAATATGACCCTTTTTCTCATTCCATTGCATCCTCGGTCTTTCTGCATTTTCCTTCTGTTTTTACCTCTTTGGTATGTTTAACATTCTTTTCTATCATGTTTCTTTGAATTATTTATCACATTTTCTAATATGTTTTATCCTTCTATTTTTACGTCTTTCGTATGTTTAACATGCTTCTATATCATATTTGCTTGAATTATTTATCACACTTTCTGATATGTTTTATCCCTATGTTTTATCCCTCTGTTTTTACCTCTTTCCTATGTTTACCATTCATCATCTAAATGTCCACTTGCATTATTCTCTTAAATATCCTTTTGCATTGTACTTTGAAAGCATGTGTATGAAGAATTCTTCATACACATGCTTCAATGACGAATAACATGTGTATGAAGAATTCTTCATACGCATGTTATTCGTCATTGATTGCTTTGCATTGCATGTGTGAGGTCACTTTTTTCAATACATGAAATTCTACTAAAAGGAAATTCTAGTTCAATGACCTTGAACGAATTTCATAACTTTGAGGCTACTTTTTTTTCTTACATTATTTACTGATTCTTATGTATTTACTCGTACAGGTTTATAGAATTGTTATACGACCAATTTCGATTAAGGCAACGATATGTTATCACAACTTTTGGTACTTTTTGTTTCTTAATTTGTAATTTTAGTGGATAGAGTTGTAAATTAATTTTTATCATTCATCGTTTTAGGTTCTTCCAGTTAAACATTTTCGTTTCCGAGGTATACGGGTTATTCTTCATGTAATTTTTTTAGTTCCTTCATTTCACATTTTTTTGCTTTCAGTATTGTAATACTTTCCTTCCTTCCTTGCATAATTTTTATTTGTTTCATAACAAGTTTCGGTTCTGTAATAATTTTTTTAGTTCCTTCCTTCCTTTCATAATTTTTCATTTTTGTACACAAATTGTTGTCCTAAAATAATTCTTGTATTTGGACTTTATATGAACTCAATTGTTTATTTAATACAATATTTCATACTATGTTTCATTTATTATGGATTCACCAAGCGCTTGTTTATGATATGTATAGTTTAGAAAAAAATTATTTTCTCTATTTTAGCATAAAGTAATTCTTACCCATACGTATACCTAAGTTAGTAAACCATTATCAAACTTCAATATCGTAGTGTTCAACATTTGGTCGGGATAGTGGTACGTTTAGAAAAAAAATCGGAGAATAGATAGACAAAATGGTAGAATTACGAGTATGGTTTAGGTCGAAACAACTGTAAGAAATTTAAGTACACAACAATCTTCAAACGTTTTAAATGTGTGTCATCTTGATTTTTTCAAACATTTTTTCACCTAATCAATTTAAAAAAAAAAACAACTTGTAATGACTTTATTCAAAATTGTAAATTTTTTTTCTAACTCGAGCGATTCCATATACGATACATATTGTTTATTGTTGAAACTTCAAAACTAATATGCACTTAGGACAGCTAATTGGGGACGAGAGTGACAAATAGAAGAGGGAACGAGGGAGTTAACGGTTGTAGGGGTCGAACGTGACATATTTTTATTTAGAAATTGGAATAGATAGGTATTTTTCTAATAAAACTTCAGACGATTTAAATGAGGAACAATGGGAGAAATAAATCATTTACTGCTCTTTAGAAAAGTTGGAGAGATGTGACAATTACAATTGCCTTACATGTCTTACATGAAAATAAGAATTCTACTTTTATAACAATTTGTCTTCGAAGGAAAAAAAAAGGGGAATGTTGTAACTTTCGTTACCCAGATATAAACACTTCTTTTCCAAAATCATAATTTTAGTGAGAAGCTATAAAATATGTCTTATGTCACATTATGCTTTATTTTTAAAAAAAGAACGAATCATTATAAACGTTGATTTGCTTTTGTATCAGTTTTTTTTTCAAAACTTTAAAGAAGCATTTATTTCAACATGGTATCACTATAGAATTTCTGATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGTATATAGTTCGAAAGTTAGCGTACTTCTGCATAATCCAAAAGTCCGACCTAATATGTCGTCAAAGTACGAGAATGGAACGAAGATGTTTTGCCATTCTATGTCACTTACTTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATGTTCCTCCATGTACTGGCACGGGACGTGAAGAATTGAATGATTCAAAGGGAGTTCTTGTGGACCAGTGAGACAATTTTACGGCATTTTAACATAGTTCTATTGGCAGTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGTTTGAGGTACGATTTTTATAGACCAAGTTCGTACTTCAACGAATTCAAATTGCGATCTGCTGATTCACCATTGTTTATATAATGCAGAATTGCCTTGGTGCATTAGATGACACATACATCAAGGTGAACGTGATGACAAGTGATCGATCGAGATATAAAACACGAAAGGGTGAAGTTGCTACAAAGGTCCTTGGAGTATGTGATATGAAAGGAGATTTAGTTTTCGTATTAGCCGTTGGGAAGGATCCACTGCACACTCGCGCATCCTTCGAGATGTCATTTCAAGGTCGAACGACCTAAAGGTGCTGAAGGGTAACTACGTACATATTTTCCTTTGAAGATTTTCCCTCATGAGTTGCGACATTTAAAGTGTGTGATATCCTCACAGGGTATTACTACCTATGCGATGTCGGGTACCCTAACGCTGAGGGTTTTCTGACTCCATACAGAAGGCGAAGATATCACCTGCAGGAGTGGTGTGAGAGGGAAATGCATCTTTAACAGTGAAAAAATTCTTCAACATGAAACATTCTTCTGCATGGAATGTTATTGAAAAAGCTTCTGGTTTGTTGAAGGGTCGATGCGCAATTCTTCGAGGAAAGTCCTATTACCCCGTCGAAGTCAAAACTAGCATGATACTGACATGTTGTCTACTGCACAACCTCATAAATAGAGAGATGATGAACACTTATATACCAGATGAAGTAGATGAGGGTGATTTGACCTTTGCGACAACTGTAGGTGACAATATTCACTACATAAATACCTCAAACGAATGGAGTCAATGAAGGGACGAGCTAGCCGAAGAAATGTTCAGTGATTGAGAGTTGCGTAATCAATAGCACCTAGTGTAGCAGTAGTACAGTGTTTACATTTAGTTGTTAATGATGCCCGATTTACTTATTTTTCCATATGCTTTAAATTTCTTTTATGTTTTAATACACTGCCAATTCACTTGAAGCACAATATATTATGTTTTTCTGTGTTTTTTCCTTACGCAACTCATTTGACTAATATGTTCGCATTTACTTTCTAGTATGACAAGTTCTTCAAGGACCCCTAAGCACTTGTGGACGAAAGAGGAGGCCACCTTCGTTGAGTGCTTGGTGGAATTGGTCTCCGTCGGTGGCTGAAGGTCCGACAACGGGACATTTAGACCCGAGTACCATAGTCAACTGCAAAGAATGATGGTTGAGAAGATGCAAGGACGTAACATATATAGAGGTTTCGACCATTGATTGTCGGATAAAGATGCTGAAGAGAATGGTCTAGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGGTACGTTATTCATTCTATCAACCATTATTCGTTTCTTATAGAAAATAAACTAACAAGTTACTGCAACACTTGAACAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

mRNA sequence

GTTTGGTTTAATCTGTTCCAAAATAAATCCCTCTCATAAACCGTCTGATAACCCCCCTCAACCCCTCTCTCAGCCGACTGTAATATGTCTCCAATCCCTCTTTAATCTGTTCCAAAATAAATCCGTCGAAAATCATCCTCATCCACTCGTCTTCTTCCTCCTTTCCGTTCCATTTTCGTTTGTTGTTCAAAGCTAAGCAACTTTAACGTTTTTCCCCATTTTTCCTCTCCGAATCTACATCCATTTTGCTCTTTACGTCTTCCATCCTCGTTGCATTTTCGTCCCCGAAATCTCATCTCCGTCATTGCAAACCATGTCCTTTTCTTCTCCTAATCTCAGATCCTTCAACCCCTTTTCCTTTCGTTGATGGCTGTGTTTCGATGTTGCCTTCGAAATGGTTCTCCTTTCTCTCTCTATGGTTTCGTTGACCGATTGCGTTCCACGCGTTGCCTCCGAAACTTTTCGCCTTCCTCTCTCTGTTTCCATGCATGGCATTGCTGTAACACTTGCCACTCTGACTTCCCCTTGTCGCTTCGACTTCCACTTAGTCGCGCTACACCCAAATACCATAAATTGAATATTGCTACAGCGAAAGAGTTCGGTAGGGGCATCGACGGAGCACAACAGGGGTGACCAGTCTTTTCTATGGTTTATAGAATTGTTATACGACCAATTTCGATTAAGGCAACGATATGTTATCACAACTTTTGAATTTCTGATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

Coding sequence (CDS)

ATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

Protein sequence

MDEQDIRSLLTVFITSQCQLLLMLELFMNDNKRITHVPSDTRTIAGLASTKIVDVEEMVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTSTWRSLQCIVKD
Homology
[Close]
BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 111 WVKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAF 162

[Close]
BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.7e-29
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYE 169
           WVKSHPAAK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+
Sbjct: 111 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 160

[Close]
BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A1S3CTN6 (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 106

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 107 WVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]
BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   V   TI    +L K  M  AI EMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLK-RMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDD 81

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTS 177
           WV+SHPAAK LLN+SF HYD+L YVF KDHAT GRAE F D+GSN P GY+ F     S
Sbjct: 82  WVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAAS 139

[Close]
BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5D3D831 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001060 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 87  AIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKD 146
           AIAEMRGP+ SGF WNNE KCIIMEK+LFDNWV+SHPAAK LLN+ F +YD+L YVF  D
Sbjct: 43  AIAEMRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSD 102

Query: 147 HATEGRAEIFIDMGSNVPGGYEDFPL 173
            AT+  AE F+DMGSN P GYE F +
Sbjct: 103 RATDRFAETFVDMGSNEPDGYEGFDM 128

[Close]
BLAST of PI0021772 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-29
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 111 WVKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAF 162

[Close]
BLAST of PI0021772 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-28
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYE 169
           WVKSHPAAK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+
Sbjct: 111 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 160

[Close]
BLAST of PI0021772 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 106

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 107 WVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]
BLAST of PI0021772 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-28
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   V   TI    +L K  M  AI EMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLK-RMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDD 81

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTS 177
           WV+SHPAAK LLN+SF HYD+L YVF KDHAT GRAE F D+GSN P GY+ F     S
Sbjct: 82  WVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAAS 139

[Close]
BLAST of PI0021772 vs. NCBI nr
Match: KAA0041550.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 87  AIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKD 146
           AIAEMRGP+ SGF WNNE KCIIMEK+LFDNWV+SHPAAK LLN+ F +YD+L YVF  D
Sbjct: 43  AIAEMRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSD 102

Query: 147 HATEGRAEIFIDMGSNVPGGYEDFPL 173
            AT+  AE F+DMGSN P GYE F +
Sbjct: 103 RATDRFAETFVDMGSNEPDGYEGFDM 128

[Close]
BLAST of PI0021772 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-05
Identity = 16/61 (26.23%), Postives = 32/61 (52.46%), Query Frame = 0 

Query: 98  GFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFI 157
           GF W+NE + +  +  ++ +++K+H  A+  + R   +Y DLC + G     E    + +
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVAM 318

Query: 158 D 159
           D
Sbjct: 319 D 319

[Close]
BLAST of PI0021772 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-05
Identity = 16/61 (26.23%), Postives = 32/61 (52.46%), Query Frame = 0 

Query: 98  GFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFI 157
           GF W+NE + +  +  ++ +++K+H  A+  + R   +Y DLC + G     E    + +
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVAM 318

Query: 158 D 159
           D
Sbjct: 319 D 319

The following BLAST results are available for this feature:
BLAST of PI0021772 vs.
Match NameE-valueIdentityDescription
BLAST of PI0021772 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0984.4e-2959.29Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C1M05.7e-2960.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CTN61.3e-2858.41uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
A0A5A7TZA51.7e-2857.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D8312.8e-2869.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0021772 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047075.19.0e-2959.29retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05082.11.2e-2860.36retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008466949.12.6e-2858.41PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
KAA0048374.13.4e-2857.14retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
KAA0041550.15.8e-2869.77retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon p... [more]
BLAST of PI0021772 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02210.17.4e-0526.23unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.27.4e-0526.23unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 87..158
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 87..158

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021772.1PI0021772.1mRNA