Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGGTATAATAATATTACAAGACTCTACATCACTCGATCGGGAGTAGTTGTGGGTCATCTGGTACATATTTAAATATTGAATAATTACTTTAAATTCTTTACTCAATTAAATATTTTCTGATTTTTTTAAAAATTCACAGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATGTAGAAAAAGTGCCTCTAGTGACATAGACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA
mRNA sequence
ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA
Coding sequence (CDS)
ATGGGAGCTTCGATTCAGCAATTTGATCGAGACGTGTCAAGAATACATCCATTGAGATCGAACAATATAAGATTTCGTGATGTTGCAGATGATCTACAACATGTCTTTGATATATGTAATAATAACGAGAGGTACATAGAGGAGATACATTATATGTACGATGTACCTATTGTACCTCCACCAGTTCATAGGGAACATGTTCGAACGGAAAAAACTGAACTCGAAGAAGTTTACCATAATACACAAAGTCAAATTGGTTATGGTAGTCCGATGATGATGCCAGCATTTAGAGCAAGATATTGTGATTCTGAGGTCGATACAGGATATTATGACTCAAGGGTCGGTCCATCGTCTTCTTACATGCATGTACACGGGCGCGGCTGCGGAGAACATAACGAATATTTGTACTATGAAACACCTGCAAATGTATCAGATCCACAAGAGTACCAACAAGAACTAGAGAATCAAGAGGAGCCAGGACAGCTTAGATTCAGAGTCGACGACGACAACCAGCTCGAAATCGACGACATCCGGGGTGTGGAACTCGTTGATTTTCTTTTATCTTTTAAATAA
Protein sequence
MGASIQQFDRDVSRIHPLRSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPMMMPAFRARYCDSEVDTGYYDSRVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLRFRVDDDNQLEIDDIRGVELVDFLLSFK
Homology
BLAST of PI0014987 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 2.7e-50
Identity = 119/197 (60.41%), Postives = 131/197 (66.50%), Query Frame = 0
Query: 4 SIQQFDRDVSR--IHPL----------------RSNNIRFRDVADDLQHVFDICNNNERY 63
SIQQFD+DV++ IH RSNN R RDVADDLQ DICNNNERY
Sbjct: 6 SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVGRSNNARLRDVADDLQQFLDICNNNERY 65
Query: 64 IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MMPA 123
+EEIH MYD+PIVPPPVHR VR E+ EL++VYHN TQSQ GYGSPM MMP
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 124 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
F A YCD EV GYYD+ VGPSS SYMH H RG GEHNEYLY+E PA+VSD
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185
BLAST of PI0014987 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0
Query: 19 RSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVY 78
RSNN R RDVADDLQ DICNNNERY+EEIH MYD+PIVPPPVHR VR E+ EL++VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 79 HN---------TQSQIGYGSPM-MMPAFRARYCDSEVDTGYYDSRVGPSS---------S 138
HN TQSQ GYGSPM MMP F A YCD EV GYYD+ VGPSS S
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 139 YMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLR 164
YMH H RG GEHNEYLY+E PA+VSD QEYQQE ENQE+ Q R
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHR 190
BLAST of PI0014987 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 113/199 (56.78%), Postives = 130/199 (65.33%), Query Frame = 0
Query: 4 SIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICNNNE 63
SIQQFD DV++ + LRSNN R RDV +D Q V DICNNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341
Query: 64 RYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MM 123
RY+E+IH +YD+PIVPPPVHRE R E+ EL+EVYHN TQSQ GYGSPM MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401
Query: 124 PAFRARYCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVS 164
P F A YCDSEV GYYD+ VGPS+SYM+ HGRG GEHNEYLY+E P +VS
Sbjct: 402 PTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVS 461
BLAST of PI0014987 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 9.8e-45
Identity = 110/197 (55.84%), Postives = 124/197 (62.94%), Query Frame = 0
Query: 1 MGASIQQFDRDVSR--IH-------------PLRSNNIRFRDVADDLQHVFDICNNNERY 60
+G IQQFD DV++ IH RSNN R RDVADD Q V DICNNN+R+
Sbjct: 3 IGVLIQQFDIDVTQEYIHSYNITRLYITQLGATRSNNARLRDVADDSQQVLDICNNNKRH 62
Query: 61 IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNT---------QSQIGYGSPM-MMPA 120
+EEIH MY +PIVPP +HR V+ E+ EL+EVYHN Q+Q GYGSPM MMP
Sbjct: 63 MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122
Query: 121 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
F YCD EV+T YYDS VGPSS SYMH H GEHNEYLY+E P VSD
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182
BLAST of PI0014987 vs. ExPASy TrEMBL
Match:
A0A5A7SMM2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002820 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 9.2e-43
Identity = 105/193 (54.40%), Postives = 120/193 (62.18%), Query Frame = 0
Query: 1 MGASIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICN 60
+G SIQQFD DV++ + LRSNN R RDV DD Q V DICN
Sbjct: 3 IGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICN 62
Query: 61 NNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPM-MMPAFRAR 120
NNERY++EI+ MYD+PIVPPPVHR +SQ GYGSPM MMP A
Sbjct: 63 NNERYMDEIYNMYDLPIVPPPVHR----------------GRSQTGYGSPMTMMPTIGAG 122
Query: 121 YCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQ 164
YCDSEVDTGYYD+ VGPS+SYMH HGRG GEHN+YLY+E PA VSD QEY+
Sbjct: 123 YCDSEVDTGYYDTGVSPSSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYR 179
BLAST of PI0014987 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 208.4 bits (529), Expect = 5.5e-50
Identity = 119/197 (60.41%), Postives = 131/197 (66.50%), Query Frame = 0
Query: 4 SIQQFDRDVSR--IHPL----------------RSNNIRFRDVADDLQHVFDICNNNERY 63
SIQQFD+DV++ IH RSNN R RDVADDLQ DICNNNERY
Sbjct: 6 SIQQFDKDVTQEYIHWYSNITRLYITRPGAAVGRSNNARLRDVADDLQQFLDICNNNERY 65
Query: 64 IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MMPA 123
+EEIH MYD+PIVPPPVHR VR E+ EL++VYHN TQSQ GYGSPM MMP
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 124 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
F A YCD EV GYYD+ VGPSS SYMH H RG GEHNEYLY+E PA+VSD
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185
BLAST of PI0014987 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 113/199 (56.78%), Postives = 130/199 (65.33%), Query Frame = 0
Query: 4 SIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICNNNE 63
SIQQFD DV++ + LRSNN R RDV +D Q V DICNNNE
Sbjct: 282 SIQQFDMDVTQEYIHLYNNITRLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNE 341
Query: 64 RYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHN---------TQSQIGYGSPM-MM 123
RY+E+IH +YD+PIVPPPVHRE R E+ EL+EVYHN TQSQ GYGSPM MM
Sbjct: 342 RYMEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMM 401
Query: 124 PAFRARYCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVS 164
P F A YCDSEV GYYD+ VGPS+SYM+ HGRG GEHNEYLY+E P +VS
Sbjct: 402 PTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVS 461
BLAST of PI0014987 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 109/164 (66.46%), Postives = 118/164 (71.95%), Query Frame = 0
Query: 19 RSNNIRFRDVADDLQHVFDICNNNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVY 78
RSNN R RDVADDLQ DICNNNERY+EEIH MYD+PIVPPPVHR VR E+ EL++VY
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 79 HN---------TQSQIGYGSPM-MMPAFRARYCDSEVDTGYYDSRVGPSS---------S 138
HN TQSQ GYGSPM MMP F A YCD EV GYYD+ VGPSS S
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 139 YMHVHGRGCGEHNEYLYYETPANVSDPQEYQQELENQEEPGQLR 164
YMH H RG GEHNEYLY+E PA+VSD QEYQQE ENQE+ Q R
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHR 190
BLAST of PI0014987 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 189.9 bits (481), Expect = 2.0e-44
Identity = 110/197 (55.84%), Postives = 124/197 (62.94%), Query Frame = 0
Query: 1 MGASIQQFDRDVSR--IH-------------PLRSNNIRFRDVADDLQHVFDICNNNERY 60
+G IQQFD DV++ IH RSNN R RDVADD Q V DICNNN+R+
Sbjct: 3 IGVLIQQFDIDVTQEYIHSYNITRLYITQLGATRSNNARLRDVADDSQQVLDICNNNKRH 62
Query: 61 IEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNT---------QSQIGYGSPM-MMPA 120
+EEIH MY +PIVPP +HR V+ E+ EL+EVYHN Q+Q GYGSPM MMP
Sbjct: 63 MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122
Query: 121 FRARYCDSEVDTGYYDSRVGPSS---------SYMHVHGRGCGEHNEYLYYETPANVSDP 164
F YCD EV+T YYDS VGPSS SYMH H GEHNEYLY+E P VSD
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAPTEVSDR 182
BLAST of PI0014987 vs. NCBI nr
Match:
KAA0025967.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 105/193 (54.40%), Postives = 120/193 (62.18%), Query Frame = 0
Query: 1 MGASIQQFDRDVSR--------------------IHPLRSNNIRFRDVADDLQHVFDICN 60
+G SIQQFD DV++ + LRSNN R RDV DD Q V DICN
Sbjct: 3 IGVSIQQFDMDVTQEYIHWYNNVMRLYITRSGVAVGHLRSNNARLRDVTDDSQQVLDICN 62
Query: 61 NNERYIEEIHYMYDVPIVPPPVHREHVRTEKTELEEVYHNTQSQIGYGSPM-MMPAFRAR 120
NNERY++EI+ MYD+PIVPPPVHR +SQ GYGSPM MMP A
Sbjct: 63 NNERYMDEIYNMYDLPIVPPPVHR----------------GRSQTGYGSPMTMMPTIGAG 122
Query: 121 YCDSEVDTGYYDS---------RVGPSSSYMHVHGRGCGEHNEYLYYETPANVSDPQEYQ 164
YCDSEVDTGYYD+ VGPS+SYMH HGRG GEHN+YLY+E PA VSD QEY+
Sbjct: 123 YCDSEVDTGYYDTGVSPSSSYMDVGPSTSYMHRHGRGYGEHNKYLYHEAPAYVSDRQEYR 179
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V342 | 2.7e-50 | 60.41 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3BSG8 | 1.1e-48 | 66.46 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
A0A5D3DJV7 | 1.1e-48 | 56.78 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
A0A5A7SLF8 | 9.8e-45 | 55.84 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5A7SMM2 | 9.2e-43 | 54.40 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
Match Name | E-value | Identity | Description | |
KAA0062642.1 | 5.5e-50 | 60.41 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
TYK23842.1 | 2.3e-48 | 56.78 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
TYK01176.1 | 2.3e-48 | 66.46 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
KAA0025972.1 | 2.0e-44 | 55.84 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
KAA0025967.1 | 1.9e-42 | 54.40 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |