PI0028606.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0028606.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr08: 18197668 .. 18198283 (-)
Sequence length616
RNA-Seq ExpressionPI0028606.1
SyntenyPI0028606.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGAGAAAAATTATAAATATCCCATATATATAAAATATATAATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCCTTCAAATTCTTCCAGTAAATCCATTGGACACTACTTTTATTAACCTATTTGTTCCAGTACTGAATAATTATTTTCTGAGTACACTTGGAGCTGAGGTCATCTTTGAAGGTATTATAGATGGTAACTATGAGGTTTCGCATATTGGCAAAACATATACCCTTAAGGTGAAGGTGAAGGTCAAGGTTTTTGATGCTTATGTTATTAAGATCGCTTTGGTGACCTTCTTTCTTCCAATCCTTGGCATTCCACTCATCAAGTCATTCCAATATCTTGAAGAAATCAACATCTAAAAACCCTGAAATCATGCTATGTATAATGAAAATGGTGCTTCCTTATGCATCATTTTCATCTCTTATATATCTACCAATAAATATGTAAAATCTCTCCTTAACAATGCAATAGGGGATATTTCAATTTACATTTCTACTTTTTAATGTCGCCTTTTTTTCCTTCTTCTACTTTTTAAATCTCCGACTGTGGGTTCAAAATATTATATCACTCAACACTTCTCCTTTCGTTTGTGGGTTCGAAA

mRNA sequence

GTGAGAGAAAAATTATAAATATCCCATATATATAAAATATATAATCAAATTAGCTTATAATTTGAAAGATGACTCTTGGAATCCTTCAAATTCTTCCAGTAAATCCATTGGACACTACTTTTATTAACCTATTTGTTCCAGTACTGAATAATTATTTTCTGAGTACACTTGGAGCTGAGGTCATCTTTGAAGGTATTATAGATGGTAACTATGAGGTTTCGCATATTGGCAAAACATATACCCTTAAGGTGAAGGTGAAGGTCAAGGTTTTTGATGCTTATGTTATTAAGATCGCTTTGGTGACCTTCTTTCTTCCAATCCTTGGCATTCCACTCATCAAGTCATTCCAATATCTTGAAGAAATCAACATCTAAAAACCCTGAAATCATGCTATGTATAATGAAAATGGTGCTTCCTTATGCATCATTTTCATCTCTTATATATCTACCAATAAATATGTAAAATCTCTCCTTAACAATGCAATAGGGGATATTTCAATTTACATTTCTACTTTTTAATGTCGCCTTTTTTTCCTTCTTCTACTTTTTAAATCTCCGACTGTGGGTTCAAAATATTATATCACTCAACACTTCTCCTTTCGTTTGTGGGTTCGAAA

Coding sequence (CDS)

ATGACTCTTGGAATCCTTCAAATTCTTCCAGTAAATCCATTGGACACTACTTTTATTAACCTATTTGTTCCAGTACTGAATAATTATTTTCTGAGTACACTTGGAGCTGAGGTCATCTTTGAAGGTATTATAGATGGTAACTATGAGGTTTCGCATATTGGCAAAACATATACCCTTAAGGTGAAGGTGAAGGTCAAGGTTTTTGATGCTTATGTTATTAAGATCGCTTTGGTGACCTTCTTTCTTCCAATCCTTGGCATTCCACTCATCAAGTCATTCCAATATCTTGAAGAAATCAACATCTAA

Protein sequence

MTLGILQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGKTYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI
Homology
[Close]
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTLGI-----LQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGK 60
           MTLGI     LQI  VNPLD+  + + VP++ N+  + LG +  FEGIIDG++EV   GK
Sbjct: 1   MTLGINISGGLQI--VNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  TYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPL-IKSFQYLEEINI 102
           TYTLK+K+KV++ DAYVIKI +V FF P +G+P  + SF+Y+EEINI
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

[Close]
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.9e-16
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0 

Query: 1   MTLGI-----LQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGK 60
           MTLGI     LQI+P++  D T  +L V  +  +  S L  +  FEG+IDG  E+   GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI 102
           TYTLK+K+KV++ DAYV+KI LV  F P +G P + SF+YLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

[Close]
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 1   MTLGI-----LQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGK 60
           MTLGI     LQI+P++  D T  +L V  +  +  S L  +  FEG IDG+ E+   GK
Sbjct: 1   MTLGIGIGGGLQIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGK 60

Query: 61  TYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI 102
           TY LK+K+KV++ DAYV+KI LV  F P +G P + SF+YLEEI+I
Sbjct: 61  TYILKLKLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

[Close]
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match: A0A0A0KIX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 7   QILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGKTYTLKVKVKVK 66
           QILPV+P D + I   VP++ N+  S    +V FEGI+ G  EV   GKTYTL++K+K K
Sbjct: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69

Query: 67  VFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI 102
           V D YV+KI ++ FF P+ G P + SF+  +EIN+
Sbjct: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0 

Query: 4   GILQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGKTYTLKVKV 63
           G LQI+P++  D T  +L V  +  +  + L  +  +EG IDG+ E+   GKTY+ K+K+
Sbjct: 9   GSLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKL 68

Query: 64  KVKVFDAYVIKIALVTFFLPILGIPLIKSFQYLE 98
           K+KV DAYVIK  LV  F P +G+P I SF+YLE
Sbjct: 69  KIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

[Close]
BLAST of PI0028606.1 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-17
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTLGI-----LQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGK 60
           MTLGI     LQI  VNPLD+  + + VP++ N+  + LG +  FEGIIDG++EV   GK
Sbjct: 1   MTLGINISGGLQI--VNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGK 60

Query: 61  TYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPL-IKSFQYLEEINI 102
           TYTLK+K+KV++ DAYVIKI +V FF P +G+P  + SF+Y+EEINI
Sbjct: 61  TYTLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

[Close]
BLAST of PI0028606.1 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 0 

Query: 1   MTLGI-----LQILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGK 60
           MTLGI     LQI+P++  D T  +L V  +  +  S L  +  FEG+IDG  E+   GK
Sbjct: 1   MTLGIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGK 60

Query: 61  TYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI 102
           TYTLK+K+KV++ DAYV+KI LV  F P +G P + SF+YLEEINI
Sbjct: 61  TYTLKLKIKVRIGDAYVVKIVLVRLFFPFVGYPSVVSFEYLEEINI 106

[Close]
BLAST of PI0028606.1 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_004454 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 5.4e-12
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 0 

Query: 7   QILPVNPLDTTFINLFVPVLNNYFLSTLGAEVIFEGIIDGNYEVSHIGKTYTLKVKVKVK 66
           QILPV+P D + I   VP++ N+  S    +V FEGI+ G  EV   GKTYTL++K+K K
Sbjct: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69

Query: 67  VFDAYVIKIALVTFFLPILGIPLIKSFQYLEEINI 102
           V D YV+KI ++ FF P+ G P + SF+  +EIN+
Sbjct: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

[Close]
BLAST of PI0028606.1 vs. NCBI nr
Match: XP_031744690.1 (actin-related protein 2-like [Cucumis sativus])

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-04
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 31  LSTLGAEVIFEGIIDGNYEVSHIGKTYTLKVKVKVKVFDAYVIKIALVTFFLPILGIPLI 90
           ++ L  EV  E ++D  +EV+  GKT+TLK+K+KVK+ D+   KIA+V  F P +G+P I
Sbjct: 56  VTVLKIEVDIEAVLDVVHEVNSNGKTFTLKLKLKVKLLDSVDTKIAVVKIFWPPIGLPTI 115

Query: 91  KSFQYLE 98
            SF  +E
Sbjct: 116 LSFLCVE 122

The following BLAST results are available for this feature:
BLAST of PI0028606.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0028606.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BPM41.6e-1754.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFK83.9e-1650.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KKQ82.1e-1448.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KIX92.6e-1247.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1[more]
A0A0A0KFL55.8e-1245.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
BLAST of PI0028606.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040704.13.3e-1754.21hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071... [more]
KAE8647454.11.1e-1550.00hypothetical protein Csa_003781 [Cucumis sativus][more]
KGN48337.15.4e-1247.37hypothetical protein Csa_004454 [Cucumis sativus][more]
XP_031744690.17.1e-0444.78actin-related protein 2-like [Cucumis sativus][more]
BLAST of PI0028606.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0028606PI0028606gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0028606.1-exonPI0028606.1-exon-chr08:18197668..18198283exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0028606.1-three_prime_utrPI0028606.1-three_prime_utr-chr08:18197668..18197909three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0028606.1-cdsPI0028606.1-cds-chr08:18197910..18198215CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0028606.1-five_prime_utrPI0028606.1-five_prime_utr-chr08:18198216..18198283five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0028606.1PI0028606.1-proteinpolypeptide