Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTCTACTTACTTCTTTTGTGCAAGGTGGACTTCTAAAAGTAGCCAAGGGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCTCGACTTTATTGAGGATGTAAATGTCATTTGTAAGTACGATCCCCACGGTAATACATACAATTCGGAATGGAGAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGATGACATAGTCAAAGCTTTAGTTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACCACCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCAGATCATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCCTGAAACTCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGTGAGTCTAAGGAAGAAAAAGTAGAAACAAGTTCTTTACCATCCAATTCCAATAAAGGTAAAACTCCTCTTAATGATTTTACTCCTTATGTACCTAAAGCTCCTTTTCCTTCTAGGTTGGCTCCAAAGAAGAAGGAATCACCAAAGGAAGAAGAACTCTTGGAAATGTTTAGAAAGTTGCAAATCAATTTGCCTCTACTTGATGCAATCCAACAAGTGCCAAGGTATGCGAAGTTTCTTAAGGAGTTGTGCACCAACAAGAGGAAAATTAAGGAAAAGTCTATGGTAAGTCACAATGTTTCCGCTCTTTTAAAAAATATTATCCGGAAAAATGCAATGACCCCAGTATGTTTTCTCTTCCTTGCATAATAGGAAATAGAATAATTTCTCATGCAATGCTTGACTTAGGAGCATCCATAAATGTCATGCCATTTAGTGTTTTCAAAGATCTAGAACTTAATAACTTGCAAATAACTAGTGTATGCATACAACTAGCGGATAGATCTTTTATTTCACCGTTAGGAATAGTTGAAGACGTACTTGTGAAAATTGACAAATTAATCTTTCCAGCGGACTTTTACATTTTAGAAATGAATGAAGTATGCCTAAAACGATTTAACTCAATTTTATTAGGAAGACCTTTTCTTAAAACTGCAAAAGCAATAATAAATGTTGATAAAGGCTCTTTAAGTGTAGAATTTGATGGAGACATGGTTACATTTAATATTTTTGAATCTATGAAATATCCGGATGAATGGCTATCTTTATGTTCAATAGAATTGCATGATGAAATTGAAGAAATGTCTATTCATGATGAATTTTTTGGTCAATAATTTGTTGAAAACAAAGAATTAGTAGAACTTAATTTTGAATATCCTTTAGAGAAAAATTAATGTGATAATCTTTTCTTTTCTCCACAGGAAAAAGGGATTGA
mRNA sequence
ATGACTACTCTACTTACTTCTTTTGTGCAAGGTGGACTTCTAAAAGTAGCCAAGGGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCTCGACTTTATTGAGGATGTAAATGTCATTTGTAAGTACGATCCCCACGGTAATACATACAATTCGGAATGGAGAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGATGACATAGTCAAAGCTTTAGTTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACCACCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCAGATCATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCCTGAAACTCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGAAAAAGGGATTGA
Coding sequence (CDS)
ATGACTACTCTACTTACTTCTTTTGTGCAAGGTGGACTTCTAAAAGTAGCCAAGGGTGGAGTTTGTGGCTTAGTTGGTCATCCAAATGACAAGTGCCTCGACTTTATTGAGGATGTAAATGTCATTTGTAAGTACGATCCCCACGGTAATACATACAATTCGGAATGGAGAGACAACCCAAACTTGAGATGGGGAAATGACAACCAAAAGCCCACCCAAGCAACATCCTCCTCTTCAAACCAAGGTATGAATCTTGATGACATAGTCAAAGCTTTAGTTACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTCACTACCACCATAAGCAAGTTGGAAGGAAAAGGTAAGCTTCCGGCCCAACCAGATCATGCAAATGTGAGTGCCATCTCACTAAGAAGTGGTAAGATTCCTGAAACTCCTTCTAGTGAAGAAAAAAAGGTAACTCCCAATCCTATCCTTCTTGAAAATGAAAGAAAAAGGGATTGA
Protein sequence
MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNPNLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGKGKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILLENERKRD
Homology
BLAST of PI0020088 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG LKV K GVC LVGHPNDKC + IEDVN++ KYDP+GNTYNS WRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD 168
GKLPAQPD+ANVSAISLRSGKI +TP+++EKKVT P+ +NE K +
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEE 225
BLAST of PI0020088 vs. ExPASy TrEMBL
Match:
A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MT LLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKL AQPDHANVS ISLRS KI +TP+++EKKVT P+ L +NE K +
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEE 169
BLAST of PI0020088 vs. ExPASy TrEMBL
Match:
A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MT LLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKL AQPDHANVS ISLRS KI +TP+++EKKVT P+ L +NE K +
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEE 169
BLAST of PI0020088 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 248.1 bits (632), Expect = 2.7e-62
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD 168
GKL AQ ++ANVSA+SLRSGKI +TP+++EKK T P P+ +NE K +
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEE 310
BLAST of PI0020088 vs. ExPASy TrEMBL
Match:
A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)
HSP 1 Score: 246.9 bits (629), Expect = 6.0e-62
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG KV K GVCGLVGHPNDKC IEDVN++ +YDPH NTYNS WRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQQ+MKQQMTQLTT ISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKLPAQPDHANVSAISLRSGKI +TP+++EKK+T P+ L +NE K +
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEE 274
BLAST of PI0020088 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG LKV K GVC LVGHPNDKC + IEDVN++ KYDP+GNTYNS WRDNP
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPN--PILLENERKRD 168
GKLPAQPD+ANVSAISLRSGKI +TP+++EKKVT P+ +NE K +
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEKKVTSKLLPLNSKNESKEE 225
BLAST of PI0020088 vs. NCBI nr
Match:
XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])
HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MT LLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKL AQPDHANVS ISLRS KI +TP+++EKKVT P+ L +NE K +
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEE 169
BLAST of PI0020088 vs. NCBI nr
Match:
KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.8 bits (634), Expect = 3.2e-62
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MT LLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 1 MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA +SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 61 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKL AQPDHANVS ISLRS KI +TP+++EKKVT P+ L +NE K +
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEE 169
BLAST of PI0020088 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.1 bits (632), Expect = 5.5e-62
Identity = 127/169 (75.15%), Postives = 145/169 (85.80%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG LKV K GVCGLVGHPNDKC + IEDVN++ KYDPHGNTYNS WRDNP
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQQEMKQQMTQLTT ISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVT--PNPILLENERKRD 168
GKL AQ ++ANVSA+SLRSGKI +TP+++EKK T P P+ +NE K +
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEE 310
BLAST of PI0020088 vs. NCBI nr
Match:
TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 0
Query: 1 MTTLLTSFVQGGLLKVAKGGVCGLVGHPNDKCLDFIEDVNVICKYDPHGNTYNSEWRDNP 60
MTTLLTSFVQG KV K GVCGLVGHPNDKC IEDVN++ +YDPH NTYNS WRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDNQKPTQATSSSSNQGMNLDDIVKALVTNTLSFQQEMKQQMTQLTTTISKLEGK 120
NLRWGNDNQK TQA S+SSNQG NL+DI+KAL TNTLSFQQ+MKQQMTQLTT ISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPAQPDHANVSAISLRSGKIPETPSSEEKKVTPNPILL--ENERKRD 168
GKLPAQPDHANVSAISLRSGKI +TP+++EKK+T P+ L +NE K +
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEKKLTSKPLPLNSKNESKEE 274
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| E5GBZ4 | 1.2e-62 | 75.74 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3DCG3 | 1.6e-62 | 75.74 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A1S4E3R2 | 1.6e-62 | 75.74 | uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=... | [more] |
| A0A5D3CRR8 | 2.7e-62 | 75.15 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5D3CB46 | 6.0e-62 | 75.15 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ADN33993.1 | 2.5e-62 | 75.74 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
| XP_016902871.1 | 3.2e-62 | 75.74 | PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo] | [more] |
| KAA0051761.1 | 3.2e-62 | 75.74 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos... | [more] |
| KAA0047407.1 | 5.5e-62 | 75.15 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
| TYK07549.1 | 1.2e-61 | 75.15 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
