PI0023836 (gene) Melon (PI 482460) v1

Overview


Name	PI0023836
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr08: 13483645 .. 13484920 (+)
RNA-Seq Expression	PI0023836
Synteny	PI0023836

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGAAGTTCCCCTAGAGAATCGTACACTTTGTTAGCTTGGTATGGAGAAGCGTTGGAGATTTCTAACCCGGGTACTCAATACGATTTAGAGACAGAACCTAATGTGCATTTCAAGTATGTTTATATGGCATTTGGGGCATCCATTAGATGTTTTTTAAACTACATTAGGTTGGTCATTGCGGTTGACGTTGCACATTACAAGGGAAAGTTTAAGGGTATCATGCTCGTAGCGATGTCGATTGACGCTAATAAGCAAGTATATATGATAGCTTTTGGGTTGGGTGATAAGGAAAATGATGAATCGTAGATGTGGTTCATGAGAAGATTAAGAACAACTATCAGCACGATCAATGGGCTAGTGTTTGTATCCGACCGCCATAAGAGTATTACCAAATCCATCCAATTAGTCTTTCCTGATACTTGCCATGCACTGTGTATCCATCATTTGATCTTGAACCTGACGACAAAATTCAACAATTATAATGTGTGTGCGATTTTTTTGTTAGCCGCTAAGGCATGTCGTGAGTTGGTGTTTTAGTATTATTGGAACAAGTTGCTCCATAAAGGGGAGTTCAAAGGTATTTGGTCAAAGTAGGGTTGTCGAGGTAGGCCCGTGTATACCAGGGTGGCATGTGTTACGATCAGATGACTACTAATATCGTAGAGTGTATCAACACAATTTTAAAGGATGCGCGGTCACTACTTATAACTGCTTTCTTGGACCAAGAATGGTTCTTCAAACGTAGGGAAATAACATCAAAACGAGATTCATTATTATATGACCACGAGGAGTCCATGATTAAGCTATCTGATTTGAAGTCAATAAGGTATGTAGTTCGACCAATTGACCATCACGAGTCGGAAACTATAGATGGTCATTTAAACACTCACGTCAACTTACACGAAAAAACCTGCATGTACGGGGAGTTCGATTACTACGAAATCCCTTGTTCACATGTACTCGCTGCTTGTAGGGTCAGAACATCGATCCATACACATTATGCTCCACTGCTTACACCGTCACATCTTGGTTGGCCAGTTACGTCGAACCTATCTTCTCGGTTTGCTATGCTTCTGAATGGAAGACTACAGAAGGATTTGTCGCTAGAGTCATCCTACCAGCGCAAATAGTTGGCCAAGTTGGTTGTTGTCAAATGGAGCGTATCCCATTGAACAGTAAAATAGAGAAAAAGATTCATCGGTGTTCTCGTTGCAAGGCTGTAGGGCACAATCGAAAGACATGTAAAGCTAGATTTATTGATAATGCATAG

mRNA sequence

ATGGTCAGAAGTTCCCCTAGAGAATCGTACACTTTGTTAGCTTGGTATGGAGAAGCGTTGGAGATTTCTAACCCGGGTACTCAATACGATTTAGAGACAGAACCTAATGTGCATTTCAAGTATGTTTATATGGCATTTGGGGCATCCATTAGATGTTTTTTAAACTACATTAGGTTGGTCATTGCGGTTGACGTTGCACATTACAAGGGAAAGTTTAAGGGTATCATGCTCGTAGCGATGTCGATTGACGCTAATAAGCAAGGTCAGAACATCGATCCATACACATTATGCTCCACTGCTTACACCGTCACATCTTGGTTGGCCAGTTACGTCGAACCTATCTTCTCGGTTTGCTATGCTTCTGAATGGAAGACTACAGAAGGATTTGTCGCTAGAGTCATCCTACCAGCGCAAATAGTTGGCCAAGTTGGTTGTTGTCAAATGGAGCGTATCCCATTGAACAGTAAAATAGAGAAAAAGATTCATCGGTGTTCTCGTTGCAAGGCTGTAGGGCACAATCGAAAGACATGTAAAGCTAGATTTATTGATAATGCATAG

Coding sequence (CDS)

ATGGTCAGAAGTTCCCCTAGAGAATCGTACACTTTGTTAGCTTGGTATGGAGAAGCGTTGGAGATTTCTAACCCGGGTACTCAATACGATTTAGAGACAGAACCTAATGTGCATTTCAAGTATGTTTATATGGCATTTGGGGCATCCATTAGATGTTTTTTAAACTACATTAGGTTGGTCATTGCGGTTGACGTTGCACATTACAAGGGAAAGTTTAAGGGTATCATGCTCGTAGCGATGTCGATTGACGCTAATAAGCAAGGTCAGAACATCGATCCATACACATTATGCTCCACTGCTTACACCGTCACATCTTGGTTGGCCAGTTACGTCGAACCTATCTTCTCGGTTTGCTATGCTTCTGAATGGAAGACTACAGAAGGATTTGTCGCTAGAGTCATCCTACCAGCGCAAATAGTTGGCCAAGTTGGTTGTTGTCAAATGGAGCGTATCCCATTGAACAGTAAAATAGAGAAAAAGATTCATCGGTGTTCTCGTTGCAAGGCTGTAGGGCACAATCGAAAGACATGTAAAGCTAGATTTATTGATAATGCATAG

Protein sequence

MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLVIAVDVAHYKGKFKGIMLVAMSIDANKQGQNIDPYTLCSTAYTVTSWLASYVEPIFSVCYASEWKTTEGFVARVILPAQIVGQVGCCQMERIPLNSKIEKKIHRCSRCKAVGHNRKTCKARFIDNA

Homology

[Close]

BLAST of PI0023836 vs. ExPASy TrEMBL
Match: A0A5A7TCE7 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00350 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 0


Query: 2   VRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLVI 61
           VR SP ESY LL  YGEAL+++NPGT + +E E +  FKY++MA G  IR FLN IRLVI
Sbjct: 311 VRGSPEESYNLLRRYGEALKLTNPGTIFHMELEDDRFFKYLFMAVGPCIRGFLNCIRLVI 370

Query: 62  AVDVAHYKGKFKGIMLVAMSIDANKQ-----GQNIDPYT--------------------L 121
            +D    K K+ G + V++ +D N Q      + +D  T                    L
Sbjct: 371 VMDGTFLKNKYWGQLTVSVCLDGNNQIYPLAFKVVDRETDDLIQWFLEKLKGAIGKMPNL 430

Query: 122 CSTAYTVTSWLASYVEPIFSVCYASEWKTTEGFVARVILPAQIVGQVGCCQMERIPLNSK 178
                  T +  +YVE ++ V   S WKT+E ++   +LP ++V +VG  + +RIP   +
Sbjct: 431 GFVTDRKTCFSKAYVEAVYLVRNQSNWKTSEDYIHMTVLPPKVVKRVGRPKKKRIPSVDE 490

[Close]

BLAST of PI0023836 vs. ExPASy TrEMBL
Match: A0A5D3C5S2 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00720 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
          MVR SPRESY LLA YGE  +IS   +QYDLETEP+ HFKYVYMA GASIR FLNYIRLV
Sbjct: 1  MVRVSPRESYALLARYGEVSKISYFDSQYDLETEPDYHFKYVYMALGASIRGFLNYIRLV 60

Query: 61 IAVDVAHYKGKFK 74
          I VDVAH KGK+K
Sbjct: 61 IVVDVAHCKGKYK 73

[Close]

BLAST of PI0023836 vs. ExPASy TrEMBL
Match: A0A5A7VJH9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00690 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.0e-19
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 5   SPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLVIAVD 64
           SPRESY LLA YGE  +IS   +QYDLE EP+ HFKYVYMA GASIR FLNYIRLVI VD
Sbjct: 51  SPRESYALLARYGEVSKISYFDSQYDLEIEPDYHFKYVYMALGASIRGFLNYIRLVIVVD 110

Query: 65  VAHYKGKFK 74
           VAH KGK+K
Sbjct: 111 VAHCKGKYK 119

[Close]

BLAST of PI0023836 vs. ExPASy TrEMBL
Match: A0A6J1DL08 (uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022071 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1   MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
           +VR  P++SY  L  YGEA++I NPGT + LETE +++FKY++MA GASIR F +  R V
Sbjct: 337 IVRGRPKDSYMHLHAYGEAIKIENPGTIFHLETEGSLNFKYLFMALGASIRGFQSITRRV 396

Query: 61  IAVDVAHYKGKFKGIMLVAMSIDANKQ 88
           I VD  H KGKFKG++L+ +++D N Q
Sbjct: 397 IMVDGTHLKGKFKGVLLIGVAVDGNNQ 423

[Close]

BLAST of PI0023836 vs. ExPASy TrEMBL
Match: A0A6J1CVL4 (uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015181 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 1   MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
           ++R  P  SY LL  YGEAL+I NPGT ++LE E   +FKYV+M  G SIR FL  IR V
Sbjct: 116 LIRGDPASSYGLLPAYGEALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLGCIRPV 175

Query: 61  IAVDVAHYKGKFKGIMLVAMSIDANKQGQNIDPYTLCST-AYTVTSWL 108
           + VD AH KGKF+G++L A  +DAN Q   I P         TV SW+
Sbjct: 176 LVVDGAHLKGKFRGVLLSASGVDANNQ---IYPVAFAIVDGETVXSWV 220

[Close]

BLAST of PI0023836 vs. NCBI nr
Match: KAA0038959.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 7.1e-26
Identity = 76/201 (37.81%), Postives = 110/201 (54.73%), Query Frame = 0


Query: 2   VRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLVI 61
           VR SP ESY LL  YGEAL+++NPGT + +E E +  FKY++MA G  IR FLN IRLVI
Sbjct: 311 VRGSPEESYNLLRRYGEALKLTNPGTIFHMELEDDRFFKYLFMAVGPCIRGFLNCIRLVI 370

Query: 62  AVDVAHYKGKFKGIMLVAMSIDANKQ-----GQNIDPYT--------------------L 121
            +D    K K+ G + V++ +D N Q      + +D  T                    L
Sbjct: 371 VMDGTFLKNKYWGQLTVSVCLDGNNQIYPLAFKVVDRETDDLIQWFLEKLKGAIGKMPNL 430

Query: 122 CSTAYTVTSWLASYVEPIFSVCYASEWKTTEGFVARVILPAQIVGQVGCCQMERIPLNSK 178
                  T +  +YVE ++ V   S WKT+E ++   +LP ++V +VG  + +RIP   +
Sbjct: 431 GFVTDRKTCFSKAYVEAVYLVRNQSNWKTSEDYIHMTVLPPKVVKRVGRPKKKRIPSVDE 490

[Close]

BLAST of PI0023836 vs. NCBI nr
Match: TYK07187.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 56/73 (76.71%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
          MVR SPRESY LLA YGE  +IS   +QYDLETEP+ HFKYVYMA GASIR FLNYIRLV
Sbjct: 1  MVRVSPRESYALLARYGEVSKISYFDSQYDLETEPDYHFKYVYMALGASIRGFLNYIRLV 60

Query: 61 IAVDVAHYKGKFK 74
          I VDVAH KGK+K
Sbjct: 61 IVVDVAHCKGKYK 73

[Close]

BLAST of PI0023836 vs. NCBI nr
Match: KAA0065619.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-18
Identity = 52/69 (75.36%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 5   SPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLVIAVD 64
           SPRESY LLA YGE  +IS   +QYDLE EP+ HFKYVYMA GASIR FLNYIRLVI VD
Sbjct: 51  SPRESYALLARYGEVSKISYFDSQYDLEIEPDYHFKYVYMALGASIRGFLNYIRLVIVVD 110

Query: 65  VAHYKGKFK 74
           VAH KGK+K
Sbjct: 111 VAHCKGKYK 119

[Close]

BLAST of PI0023836 vs. NCBI nr
Match: XP_022154925.1 (uncharacterized protein LOC111022071 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-17
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1   MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
           +VR  P++SY  L  YGEA++I NPGT + LETE +++FKY++MA GASIR F +  R V
Sbjct: 337 IVRGRPKDSYMHLHAYGEAIKIENPGTIFHLETEGSLNFKYLFMALGASIRGFQSITRRV 396

Query: 61  IAVDVAHYKGKFKGIMLVAMSIDANKQ 88
           I VD  H KGKFKG++L+ +++D N Q
Sbjct: 397 IMVDGTHLKGKFKGVLLIGVAVDGNNQ 423

[Close]

BLAST of PI0023836 vs. NCBI nr
Match: XP_022145820.1 (uncharacterized protein LOC111015181 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 6.0e-17
Identity = 54/108 (50.00%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 1   MVRSSPRESYTLLAWYGEALEISNPGTQYDLETEPNVHFKYVYMAFGASIRCFLNYIRLV 60
           ++R  P  SY LL  YGEAL+I NPGT ++LE E   +FKYV+M  G SIR FL  IR V
Sbjct: 116 LIRGDPASSYGLLPAYGEALKIMNPGTIFELELEGGKYFKYVFMTLGQSIRGFLGCIRPV 175

Query: 61  IAVDVAHYKGKFKGIMLVAMSIDANKQGQNIDPYTLCST-AYTVTSWL 108
           + VD AH KGKF+G++L A  +DAN Q   I P         TV SW+
Sbjct: 176 LVVDGAHLKGKFRGVLLSASGVDANNQ---IYPVAFAIVDGETVXSWV 220

The following BLAST results are available for this feature:

BLAST of PI0023836 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023836 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCE7	3.4e-26	37.81	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A5D3C5S2	5.7e-21	76.71	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6...	[more]
A0A5A7VJH9	9.0e-19	75.36	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A6J1DL08	2.2e-17	52.87	uncharacterized protein LOC111022071 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CVL4	2.9e-17	50.00	uncharacterized protein LOC111015181 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of PI0023836 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038959.1	7.1e-26	37.81	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
TYK07187.1	1.2e-20	76.71	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
KAA0065619.1	1.9e-18	75.36	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_022154925.1	4.6e-17	52.87	uncharacterized protein LOC111022071 [Momordica charantia]	[more]
XP_022145820.1	6.0e-17	50.00	uncharacterized protein LOC111015181 [Momordica charantia]	[more]

BLAST of PI0023836 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023836.1	PI0023836.1	mRNA