PI0013930 (gene) Melon (PI 482460) v1

Overview


Name	PI0013930
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposable element Tf2
Location	chr06: 14628593 .. 14629900 (+)
RNA-Seq Expression	PI0013930
Synteny	PI0013930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATAGTTCGAGACAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCTATGAGTGTAGATCAATATGCAATGGATTTGGGGTTTACTACAGTAACCCGATCTAAGGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCATCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCATCCTGCCTCTCCTCTATCAAATATGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCTAGAAAAATGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTCAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAAAATATCAAAGTCTCACTCTCGATGAGACAGTTTCAAAAATCTTCCCTGAGGGCTTTAATTTCCTTCCAGAAGACCTCAGAAAAACCAAAAAATTTTTCGAGTTTATTCTAGTAGATACAAAGTCTGTAGAAATAACTCACGTACCCAACAAAAACGATCCTTCAAAAGTCGCTTATTCCAAACTAAAAAATTTCAAAGCAATCAATCCAACTCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTCTCAAAACCATTTGTACCTCAATCCTACTCTTACCAAGACTACATTAAAGCTTGGTTTAGAGTTATTTGGTTTTCTAGCAGGAACCATTCTTGGTTCATTTCCTTTTGCCAGAACGCCTACAAAATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTTACAGGCGACATCCTACCAACTCCCATTCAAGAATCCTATTTTTATTTCACAAGAACAATTCAAAAGAATTCTTTTCATAACTCAATGAGATTTTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACGGCATCCTATCCTCAATACAAAATGCTTGTTAAAAATCTCAAGATTAAATGGTGGGAGAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGACTATCTTCAAGACATCGATCAGAAAAAGAACACAGAATTCTTGAATGATAAATCAAAACTACTTGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTATTATCAACGGTAGTAAATGCCTCTTCAAGCTCAAAATCAGCATCTTCTTTCATACAGGAAGATGAAGAATTGGCAAGTCCAGAGTACGATCTAAACGACCCGTTTCTCGACTCACAACCTATGTGA

mRNA sequence

ATGAGTATAGTTCGAGACAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCTATGAGTGTAGATCAATATGCAATGGATTTGGGGTTTACTACAGTAACCCGATCTAAGGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCATCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCATCCTGCCTCTCCTCTATCAAATATGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCTAGAAAAATGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTCAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAAAATATCAAAGTCTCACTCTCGATGAGACAGTTTCAAAAATCTTCCCTGAGGGCTTTAATTTCCTTCCAGAAGACCTCAGAAAAACCAAAAAATTTTTCGAGTTTATTCTAGTAGATACAAAGTCTGTAGAAATAACTCACGTACCCAACAAAAACGATCCTTCAAAAGTCGCTTATTCCAAACTAAAAAATTTCAAAGCAATCAATCCAACTCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTCTCAAAACCATTTGTACCTCAATCCTACTCTTACCAAGACTACATTAAAGCTTGGTTTAGAGTTATTTGGTTTTCTAGCAGGAACCATTCTTGGTTCATTTCCTTTTGCCAGAACGCCTACAAAATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTTACAGGCGACATCCTACCAACTCCCATTCAAGAATCCTATTTTTATTTCACAAGAACAATTCAAAAGAATTCTTTTCATAACTCAATGAGATTTTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACGGCATCCTATCCTCAATACAAAATGCTTGTTAAAAATCTCAAGATTAAATGGTGGGAGAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGACTATCTTCAAGACATCGATCAGAAAAAGAACACAGAATTCTTGAATGATAAATCAAAACTACTTGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTATTATCAACGGTAGTAAATGCCTCTTCAAGCTCAAAATCAGCATCTTCTTTCATACAGGAAGATGAAGAATTGGCAAGTCCAGAGTACGATCTAAACGACCCGTTTCTCGACTCACAACCTATGTGA

Coding sequence (CDS)

ATGAGTATAGTTCGAGACAGAGGAAGAGTAAGTTCTACCTCTTCAAAGGGCAGTCGCCTATCTTCTTCACCAAATCCTGCACCCTCACCTATGAGTGTAGATCAATATGCAATGGATTTGGGGTTTACTACAGTAACCCGATCTAAGGCAAGATCGTCCGGCATACGGATTGAATCTCCCACGGAGTCATCCACTCCACCTAGGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAATAACTCATCCTGCCTCTCCTCTATCAAATATGGAGTCATCAACTCCTCCCACAACATATTCTCAGGCCGTCGCTCTAGAAAAATGGTTCATACCAAGGCCCGAGATCAAAACCTATTTTCAAAAACAAGTGGCAATCTATGATCCTATCATAGAGCCAAAATATCAAAGTCTCACTCTCGATGAGACAGTTTCAAAAATCTTCCCTGAGGGCTTTAATTTCCTTCCAGAAGACCTCAGAAAAACCAAAAAATTTTTCGAGTTTATTCTAGTAGATACAAAGTCTGTAGAAATAACTCACGTACCCAACAAAAACGATCCTTCAAAAGTCGCTTATTCCAAACTAAAAAATTTCAAAGCAATCAATCCAACTCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTCTCAAAACCATTTGTACCTCAATCCTACTCTTACCAAGACTACATTAAAGCTTGGTTTAGAGTTATTTGGTTTTCTAGCAGGAACCATTCTTGGTTCATTTCCTTTTGCCAGAACGCCTACAAAATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTTACAGGCGACATCCTACCAACTCCCATTCAAGAATCCTATTTTTATTTCACAAGAACAATTCAAAAGAATTCTTTTCATAACTCAATGAGATTTTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACGGCATCCTATCCTCAATACAAAATGCTTGTTAAAAATCTCAAGATTAAATGGTGGGAGAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGACTATCTTCAAGACATCGATCAGAAAAAGAACACAGAATTCTTGAATGATAAATCAAAACTACTTGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTATTATCAACGGTAGTAAATGCCTCTTCAAGCTCAAAATCAGCATCTTCTTTCATACAGGAAGATGAAGAATTGGCAAGTCCAGAGTACGATCTAAACGACCCGTTTCTCGACTCACAACCTATGTGA

Protein sequence

MSIVRDRGRVSSTSSKGSRLSSSPNPAPSPMSVDQYAMDLGFTTVTRSKARSSGIRIESPTESSTPPRPSANLVRPSGGITHPASPLSNMESSTPPTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETVSKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWFIQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALAQATTDADFQRLLSTVVNASSSSKSASSFIQEDEELASPEYDLNDPFLDSQPM

Homology

[Close]

BLAST of PI0013930 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 191/420 (45.48%), Postives = 269/420 (64.05%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   I D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTK-TTIVDLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N      ++ + + + ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. ExPASy TrEMBL
Match: A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 190/420 (45.24%), Postives = 269/420 (64.05%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   + D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N      ++ + + + ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 190/420 (45.24%), Postives = 268/420 (63.81%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   + D  IEPK+   ++ E  
Sbjct: 61  AASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTKTTMV-DLTIEPKFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  +Q SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N       + + +   ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. ExPASy TrEMBL
Match: A0A5A7SS94 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003480 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 4.8e-95
Identity = 193/424 (45.52%), Postives = 267/424 (62.97%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF     + D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTNTTMV-DLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+  +++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLL-STVVNASSSSKSASSFIQEDEELASPE------------YDLNDPFL 435
            A+T  +F  ++ + VVN S  +      + ED  LAS               D+NDPFL
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDD----LPEDASLASVNDVDDLDYDPYEGLDINDPFL 418

[Close]

BLAST of PI0013930 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.1e-94
Identity = 195/439 (44.42%), Postives = 278/439 (63.33%), Query Frame = 0


Query: 12  STSSKGSRLSSSPNPAPSPMSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPS 71
           +T SKG    S+ + APS MS + YAMDL F  V+R    S+   +   ++SS+ PP PS
Sbjct: 38  TTPSKGK--PSTQSSAPSLMSAENYAMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPS 97

Query: 72  ANLVRPSGGIT---HPASP-LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVA 131
             L+RPSG  T     ASP  S+  S+ P  P++YSQ V   K F PRP I  YF K   
Sbjct: 98  TALLRPSGPTTPNKRAASPTASSSRSAIPRNPSSYSQIVR-PKVFQPRPSINGYFTKTTM 157

Query: 132 IYDPIIEPKYQSLTLDETVSKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKN 191
           + D  IEP++   ++ E  ++IFP  FNFLPEDL KT  F+E+ILVD+KS EITHVP+KN
Sbjct: 158 V-DLTIEPEFDGPSVHEVCNQIFPHEFNFLPEDLTKTMTFYEYILVDSKSAEITHVPDKN 217

Query: 192 DPSKVAYSKLKNFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNH 251
           DPSK+ YSKL+ F+ + P++W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NH
Sbjct: 218 DPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNH 277

Query: 252 SWFISFCQNAYKINFPLWFIQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFC 311
           SWF++FC+ AYK++FP WF  WW  FGL+ +I P  +Q SY  F ++I  +    + RF 
Sbjct: 278 SWFMTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFA 337

Query: 312 LYFQIPWIFCWSFNTASYPQYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDID 371
           LYFQIPWIFCW+F       +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+ 
Sbjct: 338 LYFQIPWIFCWNFQLGPSENFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMT 397

Query: 372 QKKNTEFLNDKSKLLAALAQATTDADFQRLLSTVV------NASSSSKSASSFIQEDEEL 431
           ++++  FL  K+ +++ LA A+T  +F  +++ VV      N      ++ + + + ++L
Sbjct: 398 RQEDEAFLLTKNAVMSTLAGASTQQEFNYVVNNVVVNRSDDNDDLPEDASPASVNDVDDL 457

Query: 432 ASPEY---DLNDPFLDSQP 435
               Y   D+NDPFLD+QP
Sbjct: 458 DYDPYEGLDINDPFLDTQP 472

[Close]

BLAST of PI0013930 vs. NCBI nr
Match: KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 360.1 bits (923), Expect = 2.6e-95
Identity = 191/420 (45.48%), Postives = 269/420 (64.05%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   I D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTK-TTIVDLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N      ++ + + + ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. NCBI nr
Match: TYK28077.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 359.4 bits (921), Expect = 4.4e-95
Identity = 190/420 (45.24%), Postives = 269/420 (64.05%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   + D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N      ++ + + + ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 359.4 bits (921), Expect = 4.4e-95
Identity = 190/420 (45.24%), Postives = 268/420 (63.81%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   + D  IEPK+   ++ E  
Sbjct: 61  AASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTKTTMV-DLTIEPKFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  +Q SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLLSTVV------NASSSSKSASSFIQEDEELASPEY---DLNDPFLDSQP 435
            A+T  +F  +++ VV      N       + + +   ++L    Y   D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEGLDINDPFLDTQP 418

[Close]

BLAST of PI0013930 vs. NCBI nr
Match: KAA0032916.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 9.9e-95
Identity = 193/424 (45.52%), Postives = 267/424 (62.97%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTELLRPSGPTTSNMRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF     + D  IEP++   ++ E  
Sbjct: 61  DASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTNTTMV-DLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  IQ SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+  +++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLL-STVVNASSSSKSASSFIQEDEELASPE------------YDLNDPFL 435
            A+T  +F  ++ + VVN S  +      + ED  LAS               D+NDPFL
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDD----LPEDASLASVNDVDDLDYDPYEGLDINDPFL 418

[Close]

BLAST of PI0013930 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 2.2e-94
Identity = 192/420 (45.71%), Postives = 269/420 (64.05%), Query Frame = 0


Query: 31  MSVDQYAMDLGFTTVTRSKARSSGIRIESPTESST-PPRPSANLVRPSGGIT---HPASP 90
           MS + YAMDL F  V+R +  S+   +   ++SS+ PP PS  L+RPSG  T     ASP
Sbjct: 1   MSAENYAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASP 60

Query: 91  -LSNMESSTP--PTTYSQAVALEKWFIPRPEIKTYFQKQVAIYDPIIEPKYQSLTLDETV 150
             S+  S+ P  P++YSQ V   K F PRP I  YF K   + D  IEP++   ++ E  
Sbjct: 61  AASSSRSAIPRNPSSYSQIVR-PKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEVC 120

Query: 151 SKIFPEGFNFLPEDLRKTKKFFEFILVDTKSVEITHVPNKNDPSKVAYSKLKNFKAINPT 210
           S+IFP GFNFLPEDL KT+ F+E+ILVD+KS EITHVP+KNDPSK+ YSKL+ F+ + P+
Sbjct: 121 SQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPS 180

Query: 211 HWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVIWFSSRNHSWFISFCQNAYKINFPLWF 270
           +W QG+F  + FS PF P SY+Y+DY KAW+ V W  + NHSWF++FC+ AYK++FP WF
Sbjct: 181 YWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWF 240

Query: 271 IQWWNNFGLTGDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYP 330
             WW  FGL+ +I P  +Q SY  F ++I  +    + RF LYFQIPWIFCW+F      
Sbjct: 241 QNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSG 300

Query: 331 QYKMLVKNLKIKWWEKYNFQHATIKHMKEWFAENDYLQDIDQKKNTEFLNDKSKLLAALA 390
            +K L K+L+IKWWEK+N+ H  +  +K+WF  N +LQD+ ++++  FL  K+ +++ LA
Sbjct: 301 NFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLA 360

Query: 391 QATTDADFQRLL-STVVNASSSSK------SASSFIQEDEELASP--EYDLNDPFLDSQP 435
            A+T  +F  ++ + VVN S  +       S +S    D+    P    D+NDPFLD+QP
Sbjct: 361 GASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDTQP 418

The following BLAST results are available for this feature:

BLAST of PI0013930 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR64	1.3e-95	45.48	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]
A0A5D3DW87	2.1e-95	45.24	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P...	[more]
A0A5A7VIK9	2.1e-95	45.24	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SS94	4.8e-95	45.52	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U3G5	1.1e-94	44.42	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]

BLAST of PI0013930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032923.1	2.6e-95	45.48	polyprotein [Cucumis melo var. makuwa]	[more]
TYK28077.1	4.4e-95	45.24	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0068172.1	4.4e-95	45.24	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032916.1	9.9e-95	45.52	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransp...	[more]
KAA0063832.1	2.2e-94	45.71	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of PI0013930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..435
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 125..419
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 125..419

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0013930.1	PI0013930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding