PI0005656 (gene) Melon (PI 482460) v1

Overview
NamePI0005656
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag/pol protein
Locationchr11: 22015048 .. 22015338 (+)
RNA-Seq ExpressionPI0005656
SyntenyPI0005656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCACGAGGAAGGCCAAGGTGAGGAAGGCAAGTGGCAACTGGAGTCCGAGCTACTGGGAGCACTAATAGAGCGCCTGAATTGGATGAAATGTCTAGTAATCCTCATGTTGCGATCGAGCAAAACATAGAAGAAAGTTTGTTCAATCATTTTACCCATAGAGTGGCAGATCATATTATGCCATCAAACCCTACATTAGATAAACAATTTGGAATTGAAAGGCTAAAGGCATTTGGAGCAACGACCTTCGAAGGACCACTAATTTGGCCAACACGGAGAAGTGGTTGA

mRNA sequence

ATGGCACCACGAGGAAGGCCAAGCACTAATAGAGCGCCTGAATTGGATGAAATGTCTAGTAATCCTCATGTTGCGATCGAGCAAAACATAGAAGAAAGTTTGTTCAATCATTTTACCCATAGAGTGGCAGATCATATTATGCCATCAAACCCTACATTAGATAAACAATTTGGAATTGAAAGGCTAAAGGCATTTGGAGCAACGACCTTCGAAGGACCACTAATTTGGCCAACACGGAGAAGTGGTTGA

Coding sequence (CDS)

ATGGCACCACGAGGAAGGCCAAGCACTAATAGAGCGCCTGAATTGGATGAAATGTCTAGTAATCCTCATGTTGCGATCGAGCAAAACATAGAAGAAAGTTTGTTCAATCATTTTACCCATAGAGTGGCAGATCATATTATGCCATCAAACCCTACATTAGATAAACAATTTGGAATTGAAAGGCTAAAGGCATTTGGAGCAACGACCTTCGAAGGACCACTAATTTGGCCAACACGGAGAAGTGGTTGA

Protein sequence

MAPRGRPSTNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGATTFEGPLIWPTRRSG
Homology
BLAST of PI0005656 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 8  STNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGA 67
          S NRA  LDEMSSNPH  I QN+EES+FN F  RVADH++P    ++K+  IER+KA GA
Sbjct: 12 SANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIERIKALGA 71

Query: 68 TTFEGPL 75
          TTFEG +
Sbjct: 72 TTFEGTI 78

BLAST of PI0005656 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-14
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 8  STNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGA 67
          S NRA  LDEMSSNPH  I QN+EES+FN F  RVADH++P    ++K+  IER+KA GA
Sbjct: 12 SANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIERIKALGA 71

Query: 68 TTFEGPL 75
          T FEG +
Sbjct: 72 TAFEGTI 78

BLAST of PI0005656 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 10  NRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGATT 69
           NRA    ++SSNPH ++ QN+EES+F+ F  R+ DH MP   T+DK+FGIERLKA GA T
Sbjct: 44  NRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIERLKALGAMT 103

Query: 70  FEG 73
           FEG
Sbjct: 104 FEG 106

BLAST of PI0005656 vs. ExPASy TrEMBL
Match: A0A5D3BCS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00160 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.8e-10
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 4   RGRPSTNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLK 63
           +G  + +R  E DEMS N H  + QN+ ES+F+ FT ++ DH MP+  T+ K+FGIERLK
Sbjct: 169 QGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTMCKRFGIERLK 228

Query: 64  AFGATTFEG 73
           A  A TFEG
Sbjct: 229 ALRAMTFEG 237

BLAST of PI0005656 vs. ExPASy TrEMBL
Match: A0A5D3BUF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00680 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 8  STNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGA 67
          S N+  E +E+S+NP+  I+QN E+S+F+ F  R+ DH MP+   +DK+F IERL+A GA
Sbjct: 22 SANKVQESNEISNNPYDPIKQNTEKSMFDRFGQRLVDHFMPTPFIVDKRFNIERLRALGA 81

Query: 68 TTFE 72
          TTFE
Sbjct: 82 TTFE 85

BLAST of PI0005656 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 8  STNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGA 67
          S NRA  LDEMSSNPH  I QN+EES+FN F  RVADH++P    ++K+  IER+KA GA
Sbjct: 12 SANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRLTIERIKALGA 71

Query: 68 TTFEGPL 75
          TTFEG +
Sbjct: 72 TTFEGTI 78

BLAST of PI0005656 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 8  STNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGA 67
          S NRA  LDEMSSNPH  I QN+EES+FN F  RVADH++P    ++K+  IER+KA GA
Sbjct: 12 SANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRLTIERIKALGA 71

Query: 68 TTFEGPL 75
          T FEG +
Sbjct: 72 TAFEGTI 78

BLAST of PI0005656 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 10  NRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGATT 69
           NRA    ++SSNPH ++ QN+EES+F+ F  R+ DH MP   T+DK+FGIERLKA GA T
Sbjct: 44  NRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTVDKRFGIERLKALGAMT 103

Query: 70  FEG 73
           FEG
Sbjct: 104 FEG 106

BLAST of PI0005656 vs. NCBI nr
Match: KAE8648186.1 (hypothetical protein Csa_018470 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-10
Identity = 38/63 (60.32%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 10  NRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLKAFGATT 69
           NRA E DEMSSNPH  I QN EES+F+ F  R  DH +     +DK+F IERLKA  ATT
Sbjct: 45  NRARESDEMSSNPHHPIGQNTEESVFDLFAQRFGDHFISIPSNVDKRFDIERLKALKATT 104

Query: 70  FEG 73
           FEG
Sbjct: 105 FEG 107

BLAST of PI0005656 vs. NCBI nr
Match: TYJ97632.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 4   RGRPSTNRAPELDEMSSNPHVAIEQNIEESLFNHFTHRVADHIMPSNPTLDKQFGIERLK 63
           +G  + +R  E DEMS N H  + QN+ ES+F+ FT ++ DH MP+  T+ K+FGIERLK
Sbjct: 169 QGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHFMPTPTTMCKRFGIERLK 228

Query: 64  AFGATTFEG 73
           A  A TFEG
Sbjct: 229 ALRAMTFEG 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVY71.3e-1461.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFQ15.1e-1459.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TVM11.6e-1258.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BCS95.8e-1050.72Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G0016... [more]
A0A5D3BUF61.3e-0951.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK27664.12.8e-1461.19uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa][more]
KAA0054080.11.0e-1359.70hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa][more]
KAA0047014.13.4e-1258.73hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047... [more]
KAE8648186.15.4e-1060.32hypothetical protein Csa_018470 [Cucumis sativus][more]
TYJ97632.11.2e-0950.72gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005656.1PI0005656.1mRNA