PI0005385 (gene) Melon (PI 482460) v1

Overview


Name	PI0005385
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr11: 13782487 .. 13783418 (-)
RNA-Seq Expression	PI0005385
Synteny	PI0005385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAGCCCTCCCCACCAAATCCAAATACTCACAATCACTACTACTCCCCTGTGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGACCAAACCACCTTCTCGCCAAATATAGTTCCTGAATCCCAACTTAACCAAGGGATAGATGATTTCATGCAAGACCTCTGCAATATAGACTTTGACATTGAAGATTTAAGGGAGCCAGAGGACGCGACCCTAGTTCCTGATGGGTCGCAACATGAAGGTGTCTTGGAGGAGCCCATTGATGACCTACTCCCCAAAGGTAAGGAAATCGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCATTCGCCACCTAAGCAAACAGATGATCAACAAGATGATGTGGTGAGAGAGAATGAAAATGAGGATTTTTACAAGTTCATCAATGAGACGATTGGAAAGCCAATGATAGATGGACTTGAAGACATCTTCCAAAACCAAGTCGATCTACAAGAATGCGTGATGAGACATGAGAAGTAGATCTTGGACTTGGAGTTGAAAATTGACAATCATCACCAATCACAACATGATCAGCTCACCTCTGAAGTTGCGAGCGTGAAAGAACAGAATAAGGCGATGGTAAGTTTGATCAAGAAAGCTTCCATGCGGTCTGGCAAGCAGTACAAGTCAATCATGAACTACATCCACGCGGCTGATAACTTGCAAAAATACAAGTTATTGCGACTTTATGTAGAATAATGAAGCTATAACACAGTAGAAAAGGAGAAAATAACATTTATTGATGATTGTGAAAGACAAATTGTTTCGCAAAGAGTAAAAGAGCCATATTCCTGTTTTACGCGTTTTATTATGTCTTATGCAGGTTTTTAAGACGAAAAGAGAAGCAACCACACGAAGAAAATATCAGGCGAGGAACCATGCGTGCAACTAGGCGAACTTGA

mRNA sequence

ATGCCAAGCCCTCCCCACCAAATCCAAATACTCACAATCACTACTACTCCCCTGTGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGACCAAACCACCTTCTCGCCAAATATAGTTCCTGAATCCCAACTTAACCAAGGGATAGATGATTTCATGCAAGACCTCTGCAATATAGACTTTGACATTGAAGATTTAAGGGAGCCAGAGGACGCGACCCTAGTTCCTGATGGGTCGCAACATGAAGGTGTCTTGGAGGAGCCCATTGATGACCTACTCCCCAAAGGTAAGGAAATCGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCATTCGCCACCTAAGCAAACAGATGATCAACAAGATGATGTGGTGAGAGAGAATGAAAATGAGGATTTTTACAAGTTCATCAATGAGACGATTGGAAAGCCAATGATAGATGGACTTGAAGACATCTTCCAAAACCAAGTCGATCTACAAGAATGCGTGATGAGACATGAGAAGTTTTTAAGACGAAAAGAGAAGCAACCACACGAAGAAAATATCAGGCGAGGAACCATGCGTGCAACTAGGCGAACTTGA

Coding sequence (CDS)

ATGCCAAGCCCTCCCCACCAAATCCAAATACTCACAATCACTACTACTCCCCTGTGGCAAGAGGAAAATCCTCAATCTCTTGTCACGCAAGCCCTTGACCAAACCACCTTCTCGCCAAATATAGTTCCTGAATCCCAACTTAACCAAGGGATAGATGATTTCATGCAAGACCTCTGCAATATAGACTTTGACATTGAAGATTTAAGGGAGCCAGAGGACGCGACCCTAGTTCCTGATGGGTCGCAACATGAAGGTGTCTTGGAGGAGCCCATTGATGACCTACTCCCCAAAGGTAAGGAAATCGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCATTCGCCACCTAAGCAAACAGATGATCAACAAGATGATGTGGTGAGAGAGAATGAAAATGAGGATTTTTACAAGTTCATCAATGAGACGATTGGAAAGCCAATGATAGATGGACTTGAAGACATCTTCCAAAACCAAGTCGATCTACAAGAATGCGTGATGAGACATGAGAAGTTTTTAAGACGAAAAGAGAAGCAACCACACGAAGAAAATATCAGGCGAGGAACCATGCGTGCAACTAGGCGAACTTGA

Protein sequence

MPSPPHQIQILTITTTPLWQEENPQSLVTQALDQTTFSPNIVPESQLNQGIDDFMQDLCNIDFDIEDLREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETRAHSPPKQTDDQQDDVVRENENEDFYKFINETIGKPMIDGLEDIFQNQVDLQECVMRHEKFLRRKEKQPHEENIRRGTMRATRRT

Homology

[Close]

BLAST of PI0005385 vs. ExPASy TrEMBL
Match: A0A5D3DK59 (Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.0e-17
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 72  EDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETRAHSPPKQTDDQQDDVVRENEN 131
           E+ATL   G   + V EEP+DD L KGK+IA+E+ GE    SP KQT++QQD+  RE+++
Sbjct: 42  EEATLEKWGVTKD-VSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDD 101

Query: 132 ED-FYKFINETIGKPMIDGLEDIFQNQVDLQECV 165
           ED ++KFI++T GKPM+D LEDIFQ Q DLQEC+
Sbjct: 102 EDQYFKFISDTFGKPMMDELEDIFQIQSDLQECI 134

[Close]

BLAST of PI0005385 vs. ExPASy TrEMBL
Match: A0A5D3D8Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold811G00610 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 58  LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETRAHSPPK 117
           +C+    IED ++  ED +LVP GS  + VLE+ +DD L KGK I  + A ET   SPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 118 QTDDQQDDVVRENENEDFYKFINETIGKPMIDGLEDIFQNQVDLQECVMRHEK 170
           +T  Q D     +E ++++KFI    GKPM DG ED+FQ Q + QE  +R EK
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

[Close]

BLAST of PI0005385 vs. ExPASy TrEMBL
Match: A0A5A7T7V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001610 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-14
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 52  DDFMQDLCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETR 111
           D     +C+    IED ++  ED +LVP GS  + VLE+ +DD L KGK I  + A ET 
Sbjct: 5   DRITDSVCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETH 64

Query: 112 AHSPPKQTDDQQDDVVRENENEDFYKFINETIGKPMIDGLEDIFQNQVDLQECVMRHEK 170
             SPPK+T  Q D     ++ ++++KFI    GKPM DG ED+FQ Q + QE  +R +K
Sbjct: 65  PPSPPKETSKQHDTAKESDDKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0005385 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 53/148 (35.81%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 46  QLNQGIDDFMQD-LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAF 105
           Q ++ + D +QD LC++   I D  +E E+ TL      ++ +LE+ IDD L K K++  
Sbjct: 46  QGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDS 105

Query: 106 EEAGETRAHSPPKQT------DDQQDDVVRENENED--FYKFINETIGKPMIDGLEDIFQ 165
           E+A +TR  SPPKQ+      D +Q + +R+++++D  ++KFINE + +P+  G ED+FQ
Sbjct: 106 EDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQ 165

Query: 166 NQVDLQECVMRHEKFLRRKEKQPHEENI 184
            Q +LQE  ++++K L+  E +P  + I
Sbjct: 166 CQANLQETQLQNQKPLQDLELKPDSQCI 193

[Close]

BLAST of PI0005385 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 53/148 (35.81%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 46  QLNQGIDDFMQD-LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAF 105
           Q ++ + D +QD LC++   I D  +E E+ TL      ++ +LE+ IDD L K K++  
Sbjct: 91  QGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDS 150

Query: 106 EEAGETRAHSPPKQT------DDQQDDVVRENENED--FYKFINETIGKPMIDGLEDIFQ 165
           E+A +TR  SPPKQ+      D +Q + +R+++++D  ++KFINE + +P+  G ED+FQ
Sbjct: 151 EDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQ 210

Query: 166 NQVDLQECVMRHEKFLRRKEKQPHEENI 184
            Q +LQE  ++++K L+  E +P  + I
Sbjct: 211 CQANLQETQLQNQKPLQDLELKPDSQCI 238

[Close]

BLAST of PI0005385 vs. NCBI nr
Match: TYK23898.1 (gag-pol [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 8.2e-17
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 72  EDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETRAHSPPKQTDDQQDDVVRENEN 131
           E+ATL   G   + V EEP+DD L KGK+IA+E+ GE    SP KQT++QQD+  RE+++
Sbjct: 42  EEATLEKWGVTKD-VSEEPVDDSLLKGKQIAYEDIGEKHVPSPLKQTNEQQDNTTRESDD 101

Query: 132 ED-FYKFINETIGKPMIDGLEDIFQNQVDLQECV 165
           ED ++KFI++T GKPM+D LEDIFQ Q DLQEC+
Sbjct: 102 EDQYFKFISDTFGKPMMDELEDIFQIQSDLQECI 134

[Close]

BLAST of PI0005385 vs. NCBI nr
Match: TYK19850.1 (hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.9e-14
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 58  LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETRAHSPPK 117
           +C+    IED ++  ED +LVP GS  + VLE+ +DD L KGK I  + A ET   SPPK
Sbjct: 11  VCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETHPPSPPK 70

Query: 118 QTDDQQDDVVRENENEDFYKFINETIGKPMIDGLEDIFQNQVDLQECVMRHEK 170
           +T  Q D     +E ++++KFI    GKPM DG ED+FQ Q + QE  +R EK
Sbjct: 71  ETSKQHDTAKESDEKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSEK 123

[Close]

BLAST of PI0005385 vs. NCBI nr
Match: KAA0038296.1 (hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-13
Identity = 50/119 (42.02%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 52  DDFMQDLCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAFEEAGETR 111
           D     +C+    IED ++  ED +LVP GS  + VLE+ +DD L KGK I  + A ET 
Sbjct: 5   DRITDSVCDPFTPIEDEIKNLEDVSLVPVGSPRKEVLEKVVDDPLLKGKGITSKIASETH 64

Query: 112 AHSPPKQTDDQQDDVVRENENEDFYKFINETIGKPMIDGLEDIFQNQVDLQECVMRHEK 170
             SPPK+T  Q D     ++ ++++KFI    GKPM DG ED+FQ Q + QE  +R +K
Sbjct: 65  PPSPPKETSKQHDTAKESDDKDEYFKFIENNFGKPMRDGFEDMFQCQANFQESQLRSQK 123

[Close]

BLAST of PI0005385 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-11
Identity = 53/148 (35.81%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 46  QLNQGIDDFMQD-LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAF 105
           Q ++ + D +QD LC++   I D  +E E+ TL      ++ +LE+ IDD L K K++  
Sbjct: 46  QGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDS 105

Query: 106 EEAGETRAHSPPKQT------DDQQDDVVRENENED--FYKFINETIGKPMIDGLEDIFQ 165
           E+A +TR  SPPKQ+      D +Q + +R+++++D  ++KFINE + +P+  G ED+FQ
Sbjct: 106 EDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQ 165

Query: 166 NQVDLQECVMRHEKFLRRKEKQPHEENI 184
            Q +LQE  ++++K L+  E +P  + I
Sbjct: 166 CQANLQETQLQNQKPLQDLELKPDSQCI 193

[Close]

BLAST of PI0005385 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-11
Identity = 53/148 (35.81%), Postives = 92/148 (62.16%), Query Frame = 0


Query: 46  QLNQGIDDFMQD-LCNIDFDIED-LREPEDATLVPDGSQHEGVLEEPIDDLLPKGKEIAF 105
           Q ++ + D +QD LC++   I D  +E E+ TL      ++ +LE+ IDD L K K++  
Sbjct: 91  QGDERLQDLLQDSLCDLLAFIGDTCKESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDS 150

Query: 106 EEAGETRAHSPPKQT------DDQQDDVVRENENED--FYKFINETIGKPMIDGLEDIFQ 165
           E+A +TR  SPPKQ+      D +Q + +R+++++D  ++KFINE + +P+  G ED+FQ
Sbjct: 151 EDASKTRQPSPPKQSPKPTMQDTKQKEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQ 210

Query: 166 NQVDLQECVMRHEKFLRRKEKQPHEENI 184
            Q +LQE  ++++K L+  E +P  + I
Sbjct: 211 CQANLQETQLQNQKPLQDLELKPDSQCI 238

The following BLAST results are available for this feature:

BLAST of PI0005385 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005385 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DK59	4.0e-17	56.38	Gag-pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00780 PE=4 S...	[more]
A0A5D3D8Q5	1.4e-14	45.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T7V1	7.0e-14	42.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1H0	1.1e-11	35.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	1.1e-11	35.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0005385 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23898.1	8.2e-17	56.38	gag-pol [Cucumis melo var. makuwa]	[more]
TYK19850.1	2.9e-14	45.13	hypothetical protein E5676_scaffold811G00610 [Cucumis melo var. makuwa]	[more]
KAA0038296.1	1.5e-13	42.02	hypothetical protein E6C27_scaffold270G001610 [Cucumis melo var. makuwa]	[more]
TYK29776.1	2.3e-11	35.81	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	2.3e-11	35.81	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]

BLAST of PI0005385 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005385.1	PI0005385.1	mRNA