PI0027361.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0027361.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr04: 13418686 .. 13419429 (-)
Sequence length438
RNA-Seq ExpressionPI0027361.1
SyntenyPI0027361.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATGGCAGCTCCGACAAAGAAGCACAGGTGTTAGCCTACGAGACGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATCCCTCAAACTCCATTGCATTACATGCCACCCATCACCTTTCCCAATTTTCCAATGCCGGAACCACTTCCTCCTCTTCGATTCCATCCCTCATCGTCGTTCCTCAAACCCTTTTTACTTCATTCCGCTCCATTTTAGTCACTCACTCTGCCTTCTCCCTTCATTTTTCTGCGATTTTCAAAGGTAACCTTACTTCTCACCTCTTTACGATTTCATCTCTGGATCATTCGTATTTGATTTCCCATTTCTACGATTTTTGTTTAATCGTGCTGTTGGATACATTTTTTTTTGTGTTTTAGGTGATTTTTTGTTGAAATGGTCAATTGTCTTTGTATCCATCGGATTGATCTGTATTGAAGTATTTGAAAATATTGATAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTGTTACTGTCATTTGGATATACACGACCCTTTTGGCTCTTAAGATTGACATGATATCATAACATCCTGATGAAACTCAGGATCTCTTATCGGTTTTGCTGTTGCTGTTTCAGTCTCCGGAGCTTACTAGTTACCGAGTTCCTAATAGGCAGTTGTTCTACATCTGGTTTTGA

mRNA sequence

ATGATCAATGGCAGCTCCGACAAAGAAGCACAGGTGTTAGCCTACGAGACGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATCCCTCAAACTCCATTGCATTACATGCCACCCATCACCTTTCCCAATTTTCCAATGCCGGAACCACTTCCTCCTCTTCGATTCCATCCCTCATCGTCGTTCCTCAAACCCTTTTTACTTCATTCCGCTCCATTTTAGTCACTCACTCTGCCTTCTCCCTTCATTTTTCTGCGATTTTCAAAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTTCTCCGGAGCTTACTAGTTACCGAGTTCCTAATAGGCAGTTGTTCTACATCTGGTTTTGA

Coding sequence (CDS)

ATGATCAATGGCAGCTCCGACAAAGAAGCACAGGTGTTAGCCTACGAGACGAGCTCTCACAAGCTTCCCGAAGATCACCACATGAATCACTTCCCCCTTCTTCCTCCTCACCCATTTGCTTCTTCTTTTACCACTCAACCCAAACCATTACTCAAATCCCTCAAACTCCATTGCATTACATGCCACCCATCACCTTTCCCAATTTTCCAATGCCGGAACCACTTCCTCCTCTTCGATTCCATCCCTCATCGTCGTTCCTCAAACCCTTTTTACTTCATTCCGCTCCATTTTAGTCACTCACTCTGCCTTCTCCCTTCATTTTTCTGCGATTTTCAAAGATCCTCTAAATTCATGAGGTTTTTGTCGTCTCTGATGATTTCTCCGGAGCTTACTAGTTACCGAGTTCCTAATAGGCAGTTGTTCTACATCTGGTTTTGA

Protein sequence

MINGSSDKEAQVLAYETSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKSLKLHCITCHPSPFPIFQCRNHFLLFDSIPHRRSSNPFYFIPLHFSHSLCLLPSFFCDFQRSSKFMRFLSSLMISPELTSYRVPNRQLFYIWF
Homology
[Close]
BLAST of PI0027361.1 vs. ExPASy TrEMBL
Match: A0A0A0L8G0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.5e-58
Identity = 119/145 (82.07%), Postives = 119/145 (82.07%), Query Frame = 0 

Query: 1   MINGSSDKEAQVLAYETSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKSLKLHCIT 60
           MINGSSDKEAQVLAYETSSHKLPEDHHMNH P LPPHPFASSFTTQ KPL   LKLHCIT
Sbjct: 1   MINGSSDKEAQVLAYETSSHKLPEDHHMNHSPFLPPHPFASSFTTQSKPL---LKLHCIT 60

Query: 61  CHPSPFPIFQCRNHFLLFDSIPHRRSSNPFYFIPLHFSHSLCLLPSFFCDFQRSSKFMRF 120
           CHPSPFPIFQCRNH LLF SIPH  SS PF FI L FSHSLCLL  FFCDFQRSSKFM F
Sbjct: 61  CHPSPFPIFQCRNHSLLFHSIPHPPSSIPFCFIRLPFSHSLCLLALFFCDFQRSSKFMSF 120

Query: 121 LSSLMISPELTSYRVPNRQLFYIWF 146
                 SP LTSY  PNRQLFYIWF
Sbjct: 121 -----FSPGLTSYPFPNRQLFYIWF 137

[Close]
BLAST of PI0027361.1 vs. ExPASy TrEMBL
Match: A0A5D3CBE6 (Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00960 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.9e-46
Identity = 98/124 (79.03%), Postives = 100/124 (80.65%), Query Frame = 0 

Query: 1   MINGSSDKEAQVLAYETSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKSLKLH-CI 60
           MINGSSD EAQVLAYE SSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLK LKLH CI
Sbjct: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60

Query: 61  TCHPSPFPIFQCRNHFLLFDSIPHRRSSNPFYFIPLHFSHSLCLLPSFFCDFQRSSKFMR 120
           TCH SPF IFQC NHFLLFDSIPHR SS  F FI LHFS  LCLL  FFC FQR    + 
Sbjct: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRGRHVVE 120

Query: 121 FLSS 124
             S+
Sbjct: 121 ISST 124

[Close]
BLAST of PI0027361.1 vs. NCBI nr
Match: KAA0050792.1 (putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >TYK08554.1 putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-45
Identity = 98/124 (79.03%), Postives = 100/124 (80.65%), Query Frame = 0 

Query: 1   MINGSSDKEAQVLAYETSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKSLKLH-CI 60
           MINGSSD EAQVLAYE SSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLK LKLH CI
Sbjct: 1   MINGSSDNEAQVLAYEPSSHKLPEDHHMNHFPLLPPHPFASSFTTQPKPLLKFLKLHYCI 60

Query: 61  TCHPSPFPIFQCRNHFLLFDSIPHRRSSNPFYFIPLHFSHSLCLLPSFFCDFQRSSKFMR 120
           TCH SPF IFQC NHFLLFDSIPHR SS  F FI LHFS  LCLL  FFC FQR    + 
Sbjct: 61  TCHLSPFLIFQCWNHFLLFDSIPHRPSSIRFCFIRLHFSRFLCLLALFFCGFQRGRHVVE 120

Query: 121 FLSS 124
             S+
Sbjct: 121 ISST 124

[Close]
BLAST of PI0027361.1 vs. NCBI nr
Match: KGN58141.2 (hypothetical protein Csa_023397 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.9e-08
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHFP 33
          MINGSSDKEAQVLAYETSSHKLPEDHHMNH P
Sbjct: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHSP 32

[Close]
BLAST of PI0027361.1 vs. NCBI nr
Match: KAE8650725.1 (hypothetical protein Csa_009451 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 8.9e-08
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHFP 33
          MINGSSDKEAQVLAYETSSHKLPEDHHMNH P
Sbjct: 1  MINGSSDKEAQVLAYETSSHKLPEDHHMNHSP 32

The following BLAST results are available for this feature:
BLAST of PI0027361.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0027361.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8G03.5e-5882.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G485840 PE=4 SV=1[more]
A0A5D3CBE68.9e-4679.03Putative plastidic glucose transporter 3 isoform X1 OS=Cucumis melo var. makuwa ... [more]
BLAST of PI0027361.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050792.11.8e-4579.03putative plastidic glucose transporter 3 isoform X1 [Cucumis melo var. makuwa] >... [more]
KGN58141.28.9e-0896.88hypothetical protein Csa_023397 [Cucumis sativus][more]
KAE8650725.18.9e-0896.88hypothetical protein Csa_009451 [Cucumis sativus][more]
BLAST of PI0027361.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0027361PI0027361gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0027361.1-exonPI0027361.1-exon-chr04:13418686..13418745exon
PI0027361.1-exonPI0027361.1-exon-chr04:13418857..13418896exon
PI0027361.1-exonPI0027361.1-exon-chr04:13419092..13419429exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0027361.1-cdsPI0027361.1-cds-chr04:13418686..13418745CDS
PI0027361.1-cdsPI0027361.1-cds-chr04:13418857..13418896CDS
PI0027361.1-cdsPI0027361.1-cds-chr04:13419092..13419429CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0027361.1PI0027361.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity