MS022962 (gene) Bitter gourd (TR) v1

Overview
NameMS022962
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionethylene-responsive transcription factor ERF061-like
Locationscaffold357: 133779 .. 134024 (-)
RNA-Seq ExpressionMS022962
SyntenyMS022962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAACACAACCAGTCTTCGGTTTGGCCAAATAGATGTTTCCGATGTGACGACGACTCTCTCAAATTTGATTTTGTTGGTCAAAGGGAATACTTTGGATTCGATCTTCTCACACTGCGTAAATGTCTCCGACGCTGGAGCTCTAGATCTGGTAATCGAAGGGTTGTCGGTTTACCTCCAGCAACGGGAGCTTTTGCAGAGATTTTCTCAAGACAGGAAAATGAATGGGTCTACGGATCTGTGG

mRNA sequence

ATGATGAACACAACCAGTCTTCGGTTTGGCCAAATAGATGTTTCCGATGTGACGACGACTCTCTCAAATTTGATTTTGTTGGTCAAAGGGAATACTTTGGATTCGATCTTCTCACACTGCGTAAATGTCTCCGACGCTGGAGCTCTAGATCTGGTAATCGAAGGGTTGTCGGTTTACCTCCAGCAACGGGAGCTTTTGCAGAGATTTTCTCAAGACAGGAAAATGAATGGGTCTACGGATCTGTGG

Coding sequence (CDS)

ATGATGAACACAACCAGTCTTCGGTTTGGCCAAATAGATGTTTCCGATGTGACGACGACTCTCTCAAATTTGATTTTGTTGGTCAAAGGGAATACTTTGGATTCGATCTTCTCACACTGCGTAAATGTCTCCGACGCTGGAGCTCTAGATCTGGTAATCGAAGGGTTGTCGGTTTACCTCCAGCAACGGGAGCTTTTGCAGAGATTTTCTCAAGACAGGAAAATGAATGGGTCTACGGATCTGTGG

Protein sequence

MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVNVSDAGALDLVIEGLSVYLQQRELLQRFSQDRKMNGSTDLW
Homology
BLAST of MS022962 vs. NCBI nr
Match: XP_022146001.1 (ethylene-responsive transcription factor ERF061-like [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGN-TLDSIFSHCVNVSDAGALDLVIEGLSVY 60
          MMNT SL FG  DVSDVT TLSNLIL   GN TLDSIFSHC N    GALD  I G SVY
Sbjct: 3  MMNTASLPFGLTDVSDVTATLSNLILTGGGNTTLDSIFSHCGNFV-GGALDQGIGGSSVY 62

Query: 61 LQQRELLQRFSQDRKMNGSTDLW 83
          L+QRELLQRFSQDRK+NGS DL+
Sbjct: 63 LRQRELLQRFSQDRKVNGSRDLF 84

BLAST of MS022962 vs. NCBI nr
Match: KAG6579553.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVN---VSDAGALDLVIEGLS 60
          MMN   L+F    ++DV+T LSNLIL   GNTLDSIFSHC N   V+D G  D ++ G S
Sbjct: 4  MMNRADLQF---QLTDVSTALSNLILTGGGNTLDSIFSHCENLASVNDGGDFDRLV-GSS 63

Query: 61 VYLQQRELLQRFSQDRKMNGSTDLW 83
          VYLQQRE+L+RFSQD K NGS DL+
Sbjct: 64 VYLQQREVLKRFSQDSKPNGSRDLF 84

BLAST of MS022962 vs. NCBI nr
Match: KAG7017013.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVN---VSDAGALDLVIEGLS 60
          MMN   L+F    ++DV+T LSNLIL   GNTLDSIFSHC N   V+D G  D ++ G S
Sbjct: 4  MMNRADLQF---QLTDVSTALSNLILTGGGNTLDSIFSHCENLASVNDGGDFDRLV-GSS 63

Query: 61 VYLQQRELLQRFSQDRKMNGSTDLW 83
          VYLQQRE+L+RFSQD K NGS DL+
Sbjct: 64 VYLQQREVLKRFSQDSKPNGSRDLF 84

BLAST of MS022962 vs. NCBI nr
Match: XP_038906717.1 (ethylene-responsive transcription factor ERF061-like [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVNV---SDAGALDLVIEGL- 60
          +MN  +L+FG   ++DV+T LSNLIL   GNTLDSIFSHC N+   +D+      +E   
Sbjct: 4  VMNRPNLQFG---LTDVSTALSNLILTGGGNTLDSIFSHCENLASGNDSRDFQPAMESSV 63

Query: 61 --SVYLQQRELLQRFSQDRKMNGSTDLW 83
            SVYLQQRE+LQRFSQDRK NGS DL+
Sbjct: 64 YPSVYLQQREVLQRFSQDRKSNGSRDLF 88

BLAST of MS022962 vs. NCBI nr
Match: XP_023551415.1 (ethylene-responsive transcription factor ERF061-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVN---VSDAGALDLVIEGLS 60
          MMN   L+F    ++DV+T LSNLIL   GNTLDSIFSHC N   ++D G  D  + G S
Sbjct: 4  MMNRADLQF---QLTDVSTALSNLILTGGGNTLDSIFSHCENLASMNDGGDFDRPV-GSS 63

Query: 61 VYLQQRELLQRFSQDRKMNGSTDLW 83
          VYLQQRE+L+RFSQD K NGS  L+
Sbjct: 64 VYLQQREVLKRFSQDSKQNGSRGLF 84

BLAST of MS022962 vs. ExPASy TrEMBL
Match: A0A6J1CY24 (ethylene-responsive transcription factor ERF061-like OS=Momordica charantia OX=3673 GN=LOC111015313 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.9e-19
Identity = 61/83 (73.49%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGN-TLDSIFSHCVNVSDAGALDLVIEGLSVY 60
          MMNT SL FG  DVSDVT TLSNLIL   GN TLDSIFSHC N    GALD  I G SVY
Sbjct: 3  MMNTASLPFGLTDVSDVTATLSNLILTGGGNTTLDSIFSHCGNFV-GGALDQGIGGSSVY 62

Query: 61 LQQRELLQRFSQDRKMNGSTDLW 83
          L+QRELLQRFSQDRK+NGS DL+
Sbjct: 63 LRQRELLQRFSQDRKVNGSRDLF 84

BLAST of MS022962 vs. ExPASy TrEMBL
Match: A0A6J1H0R0 (ethylene-responsive transcription factor ERF061-like OS=Cucurbita moschata OX=3662 GN=LOC111459370 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-12
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 10 GQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVNVS----DAGALDLVIEGLSVYLQQREL 69
          G +  +DV+T LSNLIL   GNTLDSIFSHC N S    D    D  + G SVYL+QRE+
Sbjct: 8  GTLQFTDVSTALSNLILTAGGNTLDSIFSHCDNFSCSVIDGVDFDPAV-GSSVYLRQREV 67

Query: 70 LQRFSQDRKMNGSTDLW 83
          LQRFSQ+RK NGS DL+
Sbjct: 68 LQRFSQERKANGSRDLF 83

BLAST of MS022962 vs. ExPASy TrEMBL
Match: A0A6J1K5K2 (ethylene-responsive transcription factor ERF061-like OS=Cucurbita maxima OX=3661 GN=LOC111490954 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-12
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 10 GQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVNVSDAGALDLVIE---GLSVYLQQRELL 69
          G +  +DV+T LSNLIL   GNTLDSIFSHC N S +    +  E   G SVYL+QRE+L
Sbjct: 8  GTLQFTDVSTALSNLILTAGGNTLDSIFSHCDNFSRSVIDGVDFEQAVGSSVYLRQREVL 67

Query: 70 QRFSQDRKMNGSTDLW 83
          QRFSQ+RK NGS DL+
Sbjct: 68 QRFSQERKANGSRDLF 83

BLAST of MS022962 vs. ExPASy TrEMBL
Match: A0A0A0KMF6 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G150420 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVNVSD-AGALDL-VIEGLSV 60
          M+NT +L+FG   ++DV+T LSNLIL   GNTLDSI SH  N+S    + D     G SV
Sbjct: 4  MINTPNLQFG---LTDVSTALSNLILTGGGNTLDSILSHYENLSSVTDSRDFQPAAGSSV 63

Query: 61 YLQQRELLQRFSQDRKMNGSTDLW 83
          YLQQRE+LQ+FSQDRK NGS DL+
Sbjct: 64 YLQQREVLQKFSQDRKSNGSRDLF 84

BLAST of MS022962 vs. ExPASy TrEMBL
Match: A0A6J1I4G2 (ethylene-responsive transcription factor ERF061-like OS=Cucurbita maxima OX=3661 GN=LOC111469073 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-11
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 0

Query: 1  MMNTTSLRFGQIDVSDVTTTLSNLILLVKGNTLDSIFSHCVN---VSDAGALDLVIEGLS 60
          MMN T L+F    ++DV+T LSNLIL   GNTLDSIFSHC N   V+D G     + G S
Sbjct: 4  MMNRTDLQF---QLTDVSTALSNLILTGGGNTLDSIFSHCENLTSVNDGGDFVRPV-GSS 63

Query: 61 VYLQQRELLQRFSQDRKMNGSTDLW 83
          VYLQQ+E+L+RFS++ K NGS DL+
Sbjct: 64 VYLQQQEVLKRFSENDKPNGSRDLF 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146001.11.8e-1873.49ethylene-responsive transcription factor ERF061-like [Momordica charantia][more]
KAG6579553.12.3e-1360.00Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
KAG7017013.12.3e-1360.00Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp.... [more]
XP_038906717.13.4e-1256.82ethylene-responsive transcription factor ERF061-like [Benincasa hispida][more]
XP_023551415.14.4e-1257.65ethylene-responsive transcription factor ERF061-like [Cucurbita pepo subsp. pepo... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CY248.9e-1973.49ethylene-responsive transcription factor ERF061-like OS=Momordica charantia OX=3... [more]
A0A6J1H0R03.6e-1259.74ethylene-responsive transcription factor ERF061-like OS=Cucurbita moschata OX=36... [more]
A0A6J1K5K24.7e-1259.21ethylene-responsive transcription factor ERF061-like OS=Cucurbita maxima OX=3661... [more]
A0A0A0KMF61.1e-1158.33AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G150420 PE=... [more]
A0A6J1I4G22.4e-1156.47ethylene-responsive transcription factor ERF061-like OS=Cucurbita maxima OX=3661... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022962.1MS022962.1mRNA