MS021687 (gene) Bitter gourd (TR) v1

Overview


Name	MS021687
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DDE Tnp4 domain-containing protein
Location	scaffold348: 329612 .. 330261 (+)
RNA-Seq Expression	MS021687
Synteny	MS021687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATCCGGCGAACGATCTGTTACCCCCGCCGTCTTCTCCAACCAATTCATCCATCTCCTCCTCCGATCTCGACACTGAGGTGCTCGCCGTCGCATCCTCCCATTTTCCGATTCTTGACCTATTTTTTATTTTGGAAATTCAATTCCGTTCGTTGCTTTTGTTCTGCAGTCTACAGGTTCGTTTTTCCATGATAGGAGCACGAGCTTGGGGACTCTAATGGGCGTCAGTTTTCCGGCGATAACCTTCCGAGCGCCGTCACAGAACCGAGACCAACACGCCGGCGCAGCCGCCGCCGCCGCCGGCCCTTCCCGCAGGAGCAAGAAGCCGAAGAGGAAAACCACGGCGGCGCCGGCACTCGTCGCGGATCGGAAGCGGAGGTGGTGGCGGCTGTGCCGGGACGACGGCGTTAAGCCGGCATCTCTCGGCGAGTTTCTCGAGGTCGAACGGAGATTTGGGGACGGTGCTTTCTACGGTAACGCGGTGGATCTGGAAGGCGTGGTAGATCAACAGAGGAATGGGCGAATGTTGTTCGCCGACGGGAGAGTGCTTCCGCCGCCGCCGCAAACGGAGGAAGACGCGTCGGCGGCCGGCGCTCTCTGCCGGTTTTCCGTATCGCTCACCGGGATTTGCAGCGGCGGTGCCGGC

mRNA sequence

ATGTTGAATCCGGCGAACGATCTGTTACCCCCGCCGTCTTCTCCAACCAATTCATCCATCTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTTTTCCATGATAGGAGCACGAGCTTGGGGACTCTAATGGGCGTCAGTTTTCCGGCGATAACCTTCCGAGCGCCGTCACAGAACCGAGACCAACACGCCGGCGCAGCCGCCGCCGCCGCCGGCCCTTCCCGCAGGAGCAAGAAGCCGAAGAGGAAAACCACGGCGGCGCCGGCACTCGTCGCGGATCGGAAGCGGAGGTGGTGGCGGCTGTGCCGGGACGACGGCGTTAAGCCGGCATCTCTCGGCGAGTTTCTCGAGGTCGAACGGAGATTTGGGGACGGTGCTTTCTACGGTAACGCGGTGGATCTGGAAGGCGTGGTAGATCAACAGAGGAATGGGCGAATGTTGTTCGCCGACGGGAGAGTGCTTCCGCCGCCGCCGCAAACGGAGGAAGACGCGTCGGCGGCCGGCGCTCTCTGCCGGTTTTCCGTATCGCTCACCGGGATTTGCAGCGGCGGTGCCGGC

Coding sequence (CDS)

ATGTTGAATCCGGCGAACGATCTGTTACCCCCGCCGTCTTCTCCAACCAATTCATCCATCTCCTCCTCCGATCTCGACACTGAGTCTACAGGTTCGTTTTTCCATGATAGGAGCACGAGCTTGGGGACTCTAATGGGCGTCAGTTTTCCGGCGATAACCTTCCGAGCGCCGTCACAGAACCGAGACCAACACGCCGGCGCAGCCGCCGCCGCCGCCGGCCCTTCCCGCAGGAGCAAGAAGCCGAAGAGGAAAACCACGGCGGCGCCGGCACTCGTCGCGGATCGGAAGCGGAGGTGGTGGCGGCTGTGCCGGGACGACGGCGTTAAGCCGGCATCTCTCGGCGAGTTTCTCGAGGTCGAACGGAGATTTGGGGACGGTGCTTTCTACGGTAACGCGGTGGATCTGGAAGGCGTGGTAGATCAACAGAGGAATGGGCGAATGTTGTTCGCCGACGGGAGAGTGCTTCCGCCGCCGCCGCAAACGGAGGAAGACGCGTCGGCGGCCGGCGCTCTCTGCCGGTTTTCCGTATCGCTCACCGGGATTTGCAGCGGCGGTGCCGGC

Protein sequence

MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVERRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTGICSGGAG

Homology

[Close]

BLAST of MS021687 vs. NCBI nr
Match: XP_022137456.1 (uncharacterized protein At3g17950 [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 2.0e-97
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG 180
           RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG
Sbjct: 121 RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG 180

Query: 181 ICSGGAG 188
           ICSGGAG
Sbjct: 181 ICSGGAG 187

[Close]

BLAST of MS021687 vs. NCBI nr
Match: XP_022924210.1 (uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharacterized protein At3g17950 [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 8.6e-88
Identity = 176/189 (93.12%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVL-PPAQTEEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. NCBI nr
Match: KAG6584313.1 (hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019905.1 hypothetical protein SDJN02_18872 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 175/189 (92.59%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QT+ED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVL-PPAQTDEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. NCBI nr
Match: XP_023520118.1 (uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_023520119.1 uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 175/189 (92.59%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH+ A AAA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHSAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVL-PPAQTEEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. NCBI nr
Match: XP_023001809.1 (uncharacterized protein At3g17950-like [Cucurbita maxima])

HSP 1 Score: 327.4 bits (838), Expect = 8.0e-86
Identity = 173/189 (91.53%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH  A  AA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATNAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+ NAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFDNAVDLEGVVSADQQRNGRYLFADGRVL-PPAQTEEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. ExPASy Swiss-Prot
Match: Q6DR24 (Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.9e-36
Identity = 105/205 (51.22%), Postives = 125/205 (60.98%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FRA S+         
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  AAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A++  +RR+ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TE 188
           GE+LEVERRFGD A Y +A  +LE  V     DQQ     R LFADGRVLPP      T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of MS021687 vs. ExPASy TrEMBL
Match: A0A6J1C6N6 (uncharacterized protein At3g17950 OS=Momordica charantia OX=3673 GN=LOC111008897 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.9e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG 180
           RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG
Sbjct: 121 RRFGDGAFYGNAVDLEGVVDQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSLTG 180

Query: 181 ICSGGAG 188
           ICSGGAG
Sbjct: 181 ICSGGAG 187

[Close]

BLAST of MS021687 vs. ExPASy TrEMBL
Match: A0A6J1E8Y2 (uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.2e-88
Identity = 176/189 (93.12%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQHA A AAA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHAAATAAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+GNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFGNAVDLEGVVSADQQRNGRSLFADGRVL-PPAQTEEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. ExPASy TrEMBL
Match: A0A6J1KNQ0 (uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC111495839 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86
Identity = 173/189 (91.53%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH  A  AA G SR+SKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATNAAGGGSRKSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAF+ NAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SAAGALCRFSVSL
Sbjct: 121 RRFGDGAFFDNAVDLEGVVSADQQRNGRYLFADGRVL-PPAQTEEDTSAAGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. ExPASy TrEMBL
Match: A0A1S4DUB1 (uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503240 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 171/189 (90.48%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 60

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH  A   A G SR+SKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 61  RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAFYGNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SA GALCRFSVSL
Sbjct: 121 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVL-PPAQTEEDTSATGALCRFSVSL 180

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 181 TGICSGGAG 188

[Close]

BLAST of MS021687 vs. ExPASy TrEMBL
Match: A0A5D3BLI7 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002420 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 171/189 (90.48%), Postives = 172/189 (91.01%), Query Frame = 0


Query: 1   MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQN 60
           MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFR PSQN
Sbjct: 486 MLNPANDLLPPPSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRVPSQN 545

Query: 61  RDQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 120
           RDQH  A   A G SR+SKK KRKTT APALVADRKRRWWRLCRDDGVKPASLGEFLEVE
Sbjct: 546 RDQHTAATVTAGGGSRKSKKTKRKTTTAPALVADRKRRWWRLCRDDGVKPASLGEFLEVE 605

Query: 121 RRFGDGAFYGNAVDLEGVV--DQQRNGRMLFADGRVLPPPPQTEEDASAAGALCRFSVSL 180
           RRFGDGAFYGNAVDLEGVV  DQQRNGR LFADGRVL PP QTEED SA GALCRFSVSL
Sbjct: 606 RRFGDGAFYGNAVDLEGVVTADQQRNGRSLFADGRVL-PPAQTEEDTSATGALCRFSVSL 665

Query: 181 TGICSGGAG 188
           TGICSGGAG
Sbjct: 666 TGICSGGAG 673

[Close]

BLAST of MS021687 vs. TAIR 10
Match: AT3G17950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-37
Identity = 105/205 (51.22%), Postives = 125/205 (60.98%), Query Frame = 0


Query: 12  PSSPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPA---ITFRAPSQNR-DQHAGA 71
           PSSPT SS+SSSDLDTESTGSFFHDRS +LGTLMG SF A   + FRA S+         
Sbjct: 7   PSSPTISSVSSSDLDTESTGSFFHDRSITLGTLMGFSFTATMPMPFRASSRRHVSPSVAI 66

Query: 72  AAAAAGPSRRSKKPKRKTTAAPALVADRKRRWWRLCRDD-------GV-------KPASL 131
           + A++  +RR+ + KR  + +      R+R+WWR CRDD       G+       K +SL
Sbjct: 67  SRASSSNARRNHQRKRPPSNSAEPEPHRRRKWWRFCRDDDDDAAGNGIHRGTGDSKRSSL 126

Query: 132 GEFLEVERRFGDGAFYGNA-VDLEGVV-----DQQ--RNGRMLFADGRVLPPPPQ---TE 188
           GE+LEVERRFGD A Y +A  +LE  V     DQQ     R LFADGRVLPP      T 
Sbjct: 127 GEYLEVERRFGDEAVYNSAEAELEDAVVARYQDQQPVMGERALFADGRVLPPASAEVVTG 186

[Close]

BLAST of MS021687 vs. TAIR 10
Match: AT3G17950.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-21
Identity = 76/172 (44.19%), Postives = 94/172 (54.65%), Query Frame = 0


Query: 45  MGVSFPA---ITFRAPSQNR-DQHAGAAAAAAGPSRRSKKPKRKTTAAPALVADRKRRWW 104
           MG SF A   + FRA S+         + A++  +RR+ + KR  + +      R+R+WW
Sbjct: 1   MGFSFTATMPMPFRASSRRHVSPSVAISRASSSNARRNHQRKRPPSNSAEPEPHRRRKWW 60

Query: 105 RLCRDD-------GV-------KPASLGEFLEVERRFGDGAFYGNA-VDLEGVV-----D 164
           R CRDD       G+       K +SLGE+LEVERRFGD A Y +A  +LE  V     D
Sbjct: 61  RFCRDDDDDAAGNGIHRGTGDSKRSSLGEYLEVERRFGDEAVYNSAEAELEDAVVARYQD 120

Query: 165 QQ--RNGRMLFADGRVLPPPPQ---TEEDASAAGALCRFSVSLTGICSGGAG 188
           QQ     R LFADGRVLPP      T E    A +LCRF VSLTGICSGG G
Sbjct: 121 QQPVMGERALFADGRVLPPASAEVVTGEGTPVATSLCRFPVSLTGICSGGGG 172

[Close]

BLAST of MS021687 vs. TAIR 10
Match: AT5G02440.1 (unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 14  SPTNSSISSSDLDTESTGSFFHDRSTSLGTLMGVSFPAITFRAPSQNRDQHAGAA 69
           SP+ SS SSSDLD++S GSFF DRS +LG L+G+S      R  ++ R+   GAA
Sbjct: 47  SPSPSSQSSSDLDSQSMGSFFRDRSYTLGNLIGISSFLELSRRSNRTRNDQTGAA 101

The following BLAST results are available for this feature:

BLAST of MS021687 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137456.1	2.0e-97	100.00	uncharacterized protein At3g17950 [Momordica charantia]	[more]
XP_022924210.1	8.6e-88	93.12	uncharacterized protein At3g17950 [Cucurbita moschata] >XP_022924211.1 uncharact...	[more]
KAG6584313.1	1.9e-87	92.59	hypothetical protein SDJN03_20245, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023520118.1	1.9e-87	92.59	uncharacterized protein At3g17950-like [Cucurbita pepo subsp. pepo] >XP_02352011...	[more]
XP_023001809.1	8.0e-86	91.53	uncharacterized protein At3g17950-like [Cucurbita maxima]	[more]

BLAST of MS021687 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DR24	7.9e-36	51.22	Uncharacterized protein At3g17950 OS=Arabidopsis thaliana OX=3702 GN=Y-3 PE=1 SV...	[more]

BLAST of MS021687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6N6	9.9e-98	100.00	uncharacterized protein At3g17950 OS=Momordica charantia OX=3673 GN=LOC111008897...	[more]
A0A6J1E8Y2	4.2e-88	93.12	uncharacterized protein At3g17950 OS=Cucurbita moschata OX=3662 GN=LOC111431726 ...	[more]
A0A6J1KNQ0	3.9e-86	91.53	uncharacterized protein At3g17950-like OS=Cucurbita maxima OX=3661 GN=LOC1114958...	[more]
A0A1S4DUB1	2.5e-85	90.48	uncharacterized protein At3g17950 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5D3BLI7	2.5e-85	90.48	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MS021687 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17950.1	5.6e-37	51.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G17950.2	1.5e-21	44.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G02440.1	1.5e-05	50.91	unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..90
None	No IPR available	PANTHER	PTHR33544:SF15	BNAANNG11020D PROTEIN	coord: 1..187
IPR040344	Uncharacterized protein At3g17950-like	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021687.1	MS021687.1	mRNA