MS020752 (gene) Bitter gourd (TR) v1

Overview


Name	MS020752
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pentatricopeptide repeat-containing protein At1g74900, mitochondrial
Location	scaffold487: 186827 .. 187023 (-)
RNA-Seq Expression	MS020752
Synteny	MS020752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGTATTTTTGTGATGGTGAGGTAGAAAATGGGTTGAATGTGTTTGAGAAGACGCACTGGTGGGATTGTTTACCGATACGTATAAAGCTTTGATTAGGGCAATGTTTATGAGGAAAAAAAGATCTAATGATTTAGTGGTTTTTGGAAAGCTATTGCTTGAAATGATTGATAGAAGATTTCTCCCTCGAAATTTT

mRNA sequence

ATTGGGTATTTTTGTGATGGTGAGGTAGAAAATGGGTTGAATGTGTTTGAGAAGACGCACTGGTGGGATTGTTTACCGACGTATAAAGCTTTGATTAGGGCAATGTTTATGAGGAAAAAAAGATCTAATGATTTAGTGGTTTTTGGAAAGCTATTGCTTGAAATGATTGATAGAAGATTTCTCCCTCGAAATTTT

Coding sequence (CDS)

ATTGGGTATTTTTGTGATGGTGAGGTAGAAAATGGGTTGAATGTGTTTGAGAAGACGCACTGGTGGGATTGTTTACCGACGTATAAAGCTTTGATTAGGGCAATGTTTATGAGGAAAAAAAGATCTAATGATTTAGTGGTTTTTGGAAAGCTATTGCTTGAAATGATTGATAGAAGATTTCTCCCTCGAAATTTT

Protein sequence

IGYFCDGEVENGLNVFEKTHWWDCLPTYKALIRAMFMRKKRSNDLVVFGKLLLEMIDRRFLPRNF

Homology

[Close]

BLAST of MS020752 vs. NCBI nr
Match: XP_022137741.1 (pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Momordica charantia] >XP_022137742.1 pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Momordica charantia] >XP_022137743.1 pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Momordica charantia] >XP_022137744.1 pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-13
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++E GL+VFEK    DCLP   TY  LI AMF+RKK S+DLVV GKLLLEMI
Sbjct: 399 IRYFCDAGDIEKGLDVFEKMGRGDCLPNMDTYNVLISAMFVRKK-SDDLVVAGKLLLEMI 458

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 459 DRGFLPRKF 466

[Close]

BLAST of MS020752 vs. NCBI nr
Match: XP_019434549.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Lupinus angustifolius] >OIV89474.1 hypothetical protein TanjilG_20936 [Lupinus angustifolius])

HSP 1 Score: 81.6 bits (200), Expect = 2.7e-12
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++E GLN+FEK     CLP   TY  LI AMF+RKK S+DLVV GKLLLEMI
Sbjct: 399 IRYFCDAGDIEKGLNMFEKMGDGSCLPNLDTYNILIGAMFVRKK-SDDLVVAGKLLLEMI 458

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 459 DRGFLPRKF 466

[Close]

BLAST of MS020752 vs. NCBI nr
Match: XP_038894755.1 (pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 45/69 (65.22%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++  GLN+FEK     CLP   TY  LI AMF+RKK S+DLVV GKLLLEMI
Sbjct: 396 IRYFCDAGDINKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKK-SDDLVVAGKLLLEMI 455

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 456 DRGFLPRKF 463

[Close]

BLAST of MS020752 vs. NCBI nr
Match: RXH77572.1 (hypothetical protein DVH24_039543 [Malus domestica])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD GE+E  LNVFEK    DCLP   TY  LI AMF+RKK   DL+V GKLL+EM+
Sbjct: 404 IRYFCDVGEIEKALNVFEKMGCGDCLPNLDTYNVLISAMFVRKK-PEDLLVAGKLLIEMV 463

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 464 DRGFLPRRF 471

[Close]

BLAST of MS020752 vs. NCBI nr
Match: KAF3438617.1 (hypothetical protein FNV43_RR21380 [Rhamnella rubrinervis])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD GE+E GLN FEK    +CLP   TY  LI AMF+RKK S+DL+V GKLL+EM+
Sbjct: 392 IRYFCDAGEIEKGLNFFEKMGSENCLPNLDTYNILISAMFLRKK-SDDLLVAGKLLIEMV 451

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 452 DRGFLPRKF 459

[Close]

BLAST of MS020752 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.8e-11
Identity = 38/69 (55.07%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I Y+ +  EVE  L +FEK    DCLP   TY  LI  MF+R KRS D+VV GKLLLEM+
Sbjct: 377 IRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVR-KRSEDMVVAGKLLLEMV 436

Query: 61  DRRFLPRNF 66
           +R F+PR F
Sbjct: 437 ERGFIPRKF 444

[Close]

BLAST of MS020752 vs. ExPASy TrEMBL
Match: A0A6J1C7J3 (pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111009095 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-13
Identity = 47/69 (68.12%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++E GL+VFEK    DCLP   TY  LI AMF+RKK S+DLVV GKLLLEMI
Sbjct: 399 IRYFCDAGDIEKGLDVFEKMGRGDCLPNMDTYNVLISAMFVRKK-SDDLVVAGKLLLEMI 458

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 459 DRGFLPRKF 466

[Close]

BLAST of MS020752 vs. ExPASy TrEMBL
Match: A0A1J7GMZ2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_20936 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 46/69 (66.67%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++E GLN+FEK     CLP   TY  LI AMF+RKK S+DLVV GKLLLEMI
Sbjct: 399 IRYFCDAGDIEKGLNMFEKMGDGSCLPNLDTYNILIGAMFVRKK-SDDLVVAGKLLLEMI 458

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 459 DRGFLPRKF 466

[Close]

BLAST of MS020752 vs. ExPASy TrEMBL
Match: A0A498I5U6 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039543 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD GE+E  LNVFEK    DCLP   TY  LI AMF+RKK   DL+V GKLL+EM+
Sbjct: 404 IRYFCDVGEIEKALNVFEKMGCGDCLPNLDTYNVLISAMFVRKK-PEDLLVAGKLLIEMV 463

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 464 DRGFLPRRF 471

[Close]

BLAST of MS020752 vs. ExPASy TrEMBL
Match: A0A6P4A419 (pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Ziziphus jujuba OX=326968 GN=LOC107418580 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           + YFCD GE+E GLN FEK    +CLP   TY  LI AMF+RKK S+DL+V GKLL+EM+
Sbjct: 392 VRYFCDAGEIEKGLNFFEKMSSGNCLPNMDTYNILISAMFVRKK-SDDLLVAGKLLIEMV 451

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 452 DRGFLPRKF 459

[Close]

BLAST of MS020752 vs. ExPASy TrEMBL
Match: A0A6A4Q4H8 (Putative pentatricopeptide OS=Lupinus albus OX=3870 GN=Lalb_Chr08g0236281 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   IGYFCD-GEVENGLNVFEKTHWWDCLP---TYKALIRAMFMRKKRSNDLVVFGKLLLEMI 60
           I YFCD G++E GLN+FEK     CLP   TY  LI AMF+RKK S+DLVV GKLL+EMI
Sbjct: 395 IRYFCDAGDIEKGLNMFEKMGDGSCLPNLDTYNILIGAMFVRKK-SDDLVVAGKLLIEMI 454

Query: 61  DRRFLPRNF 66
           DR FLPR F
Sbjct: 455 DRGFLPRKF 462

The following BLAST results are available for this feature:

BLAST of MS020752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137741.1	4.1e-13	68.12	pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Momordica ...	[more]
XP_019434549.1	2.7e-12	66.67	PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial ...	[more]
XP_038894755.1	3.5e-12	65.22	pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Benincasa ...	[more]
RXH77572.1	4.5e-12	63.77	hypothetical protein DVH24_039543 [Malus domestica]	[more]
KAF3438617.1	4.5e-12	63.77	hypothetical protein FNV43_RR21380 [Rhamnella rubrinervis]	[more]

BLAST of MS020752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R4	6.8e-11	55.07	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]

BLAST of MS020752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7J3	2.0e-13	68.12	pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Momordic...	[more]
A0A1J7GMZ2	1.3e-12	66.67	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_20936 PE=4 S...	[more]
A0A498I5U6	2.2e-12	63.77	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_039543 PE=3 SV=1	[more]
A0A6P4A419	2.2e-12	62.32	pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Ziziphus...	[more]
A0A6A4Q4H8	2.2e-12	65.22	Putative pentatricopeptide OS=Lupinus albus OX=3870 GN=Lalb_Chr08g0236281 PE=4 S...	[more]

BLAST of MS020752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..65
None	No IPR available	PANTHER	PTHR47942:SF6	OS02G0679200 PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020752.1	MS020752.1	mRNA