Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC
mRNA sequence
CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC
Coding sequence (CDS)
CTTCCATTGTACGTCGTTAACGAATTCCAGAGCCATCCAAGGACGAATCGCTCGACGAACTTTGGGGAGATGATCTTGAGTCTTACATTTCAGGCCGCCATTGGATTGGTCGTTTCTTCACAGATTCCACCTTCTCTGTCCCTACAGATTGCAGAGGTAATGGTGGTGATAAGCTTTGGAGTTTCGTTTTGTGGCGTTACTCTTCGAAATTCCTTTCCGAGATTCGGAAACAAACTCGAGAAATTTGGTTCGGTTTTAACCTGCATTATCTTCTTCCTAATGGCGACCGCCTTCCTTCCGGCGAGGTTTTGCTGGATAAGTTGGCCGGTGTTTGCTCTGTCAATGGCGGCCTTCTCATTCTCGCTCTTC
Protein sequence
LPLYVVNEFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPSLSLQIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSLF
Homology
BLAST of MS015270 vs. NCBI nr
Match:
OMO72209.1 (hypothetical protein COLO4_27768 [Corchorus olitorius])
HSP 1 Score: 82.0 bits (201), Expect = 3.9e-12
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0
Query: 8 EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVS--SQIPPSLSLQIAEVMVVISFGVSFCG 67
E QS+ + S N G+ I+SLTFQ + L +S LS+QI +V ++++F SF G
Sbjct: 33 EMQSYQQRPNSANLGKTIMSLTFQVVVALALSMGQSHHQLLSIQIVKVSMIMAFAASFSG 92
Query: 68 VTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 109
+ LRNS+P+ +E GS+ + FF+M + FLP +F W++W
Sbjct: 93 IFLRNSYPKSARIVENTGSIAAAVGFFIMTSIFLPVKFSWVAW 135
BLAST of MS015270 vs. NCBI nr
Match:
XP_021293273.1 (uncharacterized protein LOC110423379 isoform X1 [Herrania umbratica])
HSP 1 Score: 80.9 bits (198), Expect = 8.6e-12
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 0
Query: 1 LPLYV-VNEFQSHPRTNR-STNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMV 60
+PLY+ +E + H R + G+ ILSL+FQ + L SS + + L + ++ +
Sbjct: 80 IPLYINYSEIEMHSYQPRPPVSLGKTILSLSFQIVVALAPSSSMGQAHHLLPIDFVKISM 139
Query: 61 VISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSM 120
+++F SF G+ LR+S+P+ N +E GS++ + FF+M + FLP F W++W A S+
Sbjct: 140 IMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNFSWVNWLACAFSL 199
Query: 121 AAFSFSL 123
AF SL
Sbjct: 200 LAFFSSL 206
BLAST of MS015270 vs. NCBI nr
Match:
EOY01534.1 (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])
HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 0
Query: 8 EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMVVISFGVSFC 67
E QS+ + + G+ ILSL+FQ + L +SS + + L + I ++ ++++F SF
Sbjct: 90 EMQSY-QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFS 149
Query: 68 GVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSL 123
G+ LR+S+P+ N +E GS++ + FF+M + FLP W++W A S+ AF SL
Sbjct: 150 GIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAFSLLAFFSSL 206
BLAST of MS015270 vs. NCBI nr
Match:
PQM35508.1 (uncharacterized protein Pyn_09459 [Prunus yedoensis var. nudiflora])
HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 1 LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
LP+Y+ E QS+ ++ + G+ +L LTFQA +GL ++S P L+L
Sbjct: 66 LPIYLHGCQIEVQSY-QSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 125
Query: 61 QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
I V +VI+F F + L ++PR + +EKFGSV + FFLM + FL + F WI W
Sbjct: 126 HIVGVAMVIAFAACFSAIFLTRAYPRAASLIEKFGSVSAALGFFLMTSIFLSSIFIWICW 185
Query: 121 PVFALSMAAFSFSL 123
A S+ AF+ +L
Sbjct: 186 LACAFSLLAFTLAL 198
BLAST of MS015270 vs. NCBI nr
Match:
XP_020410427.1 (uncharacterized protein LOC109946571 [Prunus persica])
HSP 1 Score: 74.7 bits (182), Expect = 6.2e-10
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 1 LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
LP+Y+ E QS+ ++N + G+ +L LTFQA +GL ++S P L+L
Sbjct: 106 LPIYLHGCQIEVQSY-QSNAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 165
Query: 61 QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
+ V +VI+F F + L ++PR + +EK GSV + FFLM + FL + F WI W
Sbjct: 166 HMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFLSSIFIWICW 225
Query: 121 PVFALSMAAFSFSL 123
A S+ AF+ +L
Sbjct: 226 LACAFSLLAFTLAL 238
BLAST of MS015270 vs. ExPASy TrEMBL
Match:
A0A1R3HPA4 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0
Query: 8 EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVS--SQIPPSLSLQIAEVMVVISFGVSFCG 67
E QS+ + S N G+ I+SLTFQ + L +S LS+QI +V ++++F SF G
Sbjct: 33 EMQSYQQRPNSANLGKTIMSLTFQVVVALALSMGQSHHQLLSIQIVKVSMIMAFAASFSG 92
Query: 68 VTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 109
+ LRNS+P+ +E GS+ + FF+M + FLP +F W++W
Sbjct: 93 IFLRNSYPKSARIVENTGSIAAAVGFFIMTSIFLPVKFSWVAW 135
BLAST of MS015270 vs. ExPASy TrEMBL
Match:
A0A6J1B1Z4 (uncharacterized protein LOC110423379 isoform X1 OS=Herrania umbratica OX=108875 GN=LOC110423379 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 44/127 (34.65%), Postives = 74/127 (58.27%), Query Frame = 0
Query: 1 LPLYV-VNEFQSHPRTNR-STNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMV 60
+PLY+ +E + H R + G+ ILSL+FQ + L SS + + L + ++ +
Sbjct: 80 IPLYINYSEIEMHSYQPRPPVSLGKTILSLSFQIVVALAPSSSMGQAHHLLPIDFVKISM 139
Query: 61 VISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSM 120
+++F SF G+ LR+S+P+ N +E GS++ + FF+M + FLP F W++W A S+
Sbjct: 140 IMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNFSWVNWLACAFSL 199
Query: 121 AAFSFSL 123
AF SL
Sbjct: 200 LAFFSSL 206
BLAST of MS015270 vs. ExPASy TrEMBL
Match:
A0A061EGV0 (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM_011398 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 0
Query: 8 EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS---LSLQIAEVMVVISFGVSFC 67
E QS+ + + G+ ILSL+FQ + L +SS + + L + I ++ ++++F SF
Sbjct: 90 EMQSY-QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFS 149
Query: 68 GVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSFSL 123
G+ LR+S+P+ N +E GS++ + FF+M + FLP W++W A S+ AF SL
Sbjct: 150 GIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFLPGNLYWVTWLACAFSLLAFFSSL 206
BLAST of MS015270 vs. ExPASy TrEMBL
Match:
A0A314UEN6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_09459 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = 0
Query: 1 LPLYVVN---EFQSHPRTNRSTNFGEMILSLTFQAAIGLVVSS---------QIPPSLSL 60
LP+Y+ E QS+ ++ + G+ +L LTFQA +GL ++S P L+L
Sbjct: 66 LPIYLHGCQIEVQSY-QSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLAL 125
Query: 61 QIAEVMVVISFGVSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISW 120
I V +VI+F F + L ++PR + +EKFGSV + FFLM + FL + F WI W
Sbjct: 126 HIVGVAMVIAFAACFSAIFLTRAYPRAASLIEKFGSVSAALGFFLMTSIFLSSIFIWICW 185
Query: 121 PVFALSMAAFSFSL 123
A S+ AF+ +L
Sbjct: 186 LACAFSLLAFTLAL 198
BLAST of MS015270 vs. ExPASy TrEMBL
Match:
A0A5D2MJL9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G114200v1 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 6.7e-10
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0
Query: 8 EFQSH---PRTNRSTNFGEMILSLTFQAAIGLVVSSQIPPS----LSLQIAEVMVVISFG 67
E QSH PR N S + G+ I+SLTFQA L SS + L + +V++F
Sbjct: 83 EMQSHHQQPRPN-SVSLGKTIMSLTFQAVFALAPSSSTEQADHHHTLLPWSAASMVMAFA 142
Query: 68 VSFCGVTLRNSFPRFGNKLEKFGSVLTCIIFFLMATAFLPARFCWISWPVFALSMAAFSF 123
SFCG+ L S PR + + SV+ + FF+M++ FLP F W++W LS+ AF
Sbjct: 143 ASFCGIFLHTSHPRIASIIGNTVSVIAALGFFIMSSIFLPGNFAWVTWLACGLSLLAFFL 202
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
OMO72209.1 | 3.9e-12 | 38.83 | hypothetical protein COLO4_27768 [Corchorus olitorius] | [more] |
XP_021293273.1 | 8.6e-12 | 34.65 | uncharacterized protein LOC110423379 isoform X1 [Herrania umbratica] | [more] |
EOY01534.1 | 2.1e-10 | 34.75 | Ileal sodium/bile acid cotransporter, putative [Theobroma cacao] | [more] |
PQM35508.1 | 2.8e-10 | 36.57 | uncharacterized protein Pyn_09459 [Prunus yedoensis var. nudiflora] | [more] |
XP_020410427.1 | 6.2e-10 | 35.82 | uncharacterized protein LOC109946571 [Prunus persica] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1R3HPA4 | 1.9e-12 | 38.83 | Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1 | [more] |
A0A6J1B1Z4 | 4.2e-12 | 34.65 | uncharacterized protein LOC110423379 isoform X1 OS=Herrania umbratica OX=108875 ... | [more] |
A0A061EGV0 | 1.0e-10 | 34.75 | Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM... | [more] |
A0A314UEN6 | 1.3e-10 | 36.57 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_094... | [more] |
A0A5D2MJL9 | 6.7e-10 | 38.52 | Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G114200v1 P... | [more] |
Match Name | E-value | Identity | Description | |