MS012886 (gene) Bitter gourd (TR) v1

Overview
NameMS012886
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold38: 109081 .. 109182 (-)
RNA-Seq ExpressionMS012886
SyntenyMS012886
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAAGCGTATCTCTGTTTGCTTCTTCTTCACCCGTCATGGAATTTTAAGGACAACTTTAGGACGGTGGCCACCTAATGAAACTTTGAGTCAGTCCACCCCT

mRNA sequence

AGCAAGCGTATCTCTGTTTGCTTCTTCTTCACCCGTCATGGAATTTTAAGGACAACTTTAGGACGGTGGCCACCTAATGAAACTTTGAGTCAGTCCACCCCT

Coding sequence (CDS)

AGCAAGCGTATCTCTGTTTGCTTCTTCTTCACCCGTCATGGAATTTTAAGGACAACTTTAGGACGGTGGCCACCTAATGAAACTTTGAGTCAGTCCACCCCT

Protein sequence

SKRISVCFFFTRHGILRTTLGRWPPNETLSQSTP
Homology
[Close]
BLAST of MS012886 vs. TAIR 10
Match: AT2G07599.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 42.4 bits (98), Expect = 8.7e-05
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 0 

Query: 1   SKRISVCFFFTRHGILRTTLGRWPPNETLSQSTP 35
           S+R  V FF T+HG LR T+GRW P ET  +S P
Sbjct: 212 SERTFVRFFSTKHGSLRITVGRWLPKETAIRSAP 245

[Close]
BLAST of MS012886 vs. TAIR 10
Match: AT2G07599.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG01040.1). )

HSP 1 Score: 42.4 bits (98), Expect = 8.7e-05
Identity = 19/34 (55.88%), Postives = 23/34 (67.65%), Query Frame = 0 

Query: 1   SKRISVCFFFTRHGILRTTLGRWPPNETLSQSTP 35
           S+R  V FF T+HG LR T+GRW P ET  +S P
Sbjct: 297 SERTFVRFFSTKHGSLRITVGRWLPKETAIRSAP 330

The following BLAST results are available for this feature:
BLAST of MS012886 vs.
Match NameE-valueIdentityDescription
BLAST of MS012886 vs.
Match NameE-valueIdentityDescription
BLAST of MS012886 vs.
Match NameE-valueIdentityDescription
BLAST of MS012886 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07599.18.7e-0555.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G07599.28.7e-0555.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012886.1MS012886.1mRNA