MS012559 (gene) Bitter gourd (TR) v1

Overview


Name	MS012559
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger CCCH domain-containing protein 5
Location	scaffold63: 1535385 .. 1536665 (+)
RNA-Seq Expression	MS012559
Synteny	MS012559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAACCTAAATTCGAAGGAGAAGAAGAAGAGAAGCCTCAGGTGGGTATTGAAGCTGGCCCGCTTGAGAAGCCATGTTTGACAAAGAATCTGTGCAGGAAGGAGAAGAGGAAGGCGTTGAAGAAGATGAAACGGAAGCAATTAAGGAAAGAGGTAGCACTGAAAAAGCTCCAGGAAGAGGAGGCGCGGTCGAACGATCCTGATGAGCAGAGGAGGATCCGGTTGATGGAGCTGGAGGAAGAGGAGAGGTCGGAGAGGGAGAGGAAGCTCTTCGAGGAGCGGGAGAGAGCGTGGATGGAGGTCATGGAGTTGAAGATGAAGAAGATGGCTGAGGAGGAAGAGGAGGAGCAGCGAAGGAGCGTGTTGGAGGAAGAATCGACGGCGCCGCAGGTTTTCCTTTCCCTTCTCGCGATTTTTCAGTGGCAATCTGGTTTNCGAGTTTTGATTCAGTTTCCTCGATAAACCAAAATATCATTTGATATTCTAACGATAGAAACTACGCGTGGGTCGCATTTATCCTTGTTTCAGCTGAGGGAAGTTGTTCACTCCACCAGTTTGCAACTTTGATTTTCTTGTAGGATGAAAATGAAAATGAGTTTGGTGAGGAAGATGGTTGGGAATACATAGAAGGGCCTGCAGAAGTAATCTGGAAAGGAGAAGAGATAATTCTGAAGAAGAAACTAATTAAGGTTCCTAAGAAGAGTGTTGAACCTCAGAAAAGCCTAGAGGTATCCATTCTGCAACCAGGCCTTTATTGTTCTAGATCATCACTGTTTATGTTTAATAATTTTTTTCCTGGCACATGATGCAATGAAAATTTTTATGATCCTATATATATTCTTTTTGTAGGATGCTCATAGGCCTACGTCAAACCCTCTTCCTCCACAATCTGAAGCTTTTACAGATTATAAGGATGCAACAATTTCATCTAGACAAGTGATTGAGGATGTTGCAAGCCAAGTGCCAAATTTTGGAACGGAACAGGCATCTCTCTCTCTTTCTCTCTTTTCCTCTGTATACCGACCACCTGTAACATATTCATTCTCAAGTAGTTCTATAGTTAAGTTCAATTGTCATATGAATAAATAAGCTTTACCTATCATTTTTTTAATATGTCAGGATAAATCACATTGTCCATTCCATCTAAAAACTGGAGCTTGTCGATTTGGTCAGCGTTGTAGCAGAATTCACTTCTACCCTGACAATTCATGTACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTGCTTGGGAGCAAGACGAGGGGCTGGAG

mRNA sequence

ATGGAGGAACCTAAATTCGAAGGAGAAGAAGAAGAGAAGCCTCAGGTGGGTATTGAAGCTGGCCCGCTTGAGAAGCCATGTTTGACAAAGAATCTGTGCAGGAAGGAGAAGAGGAAGGCGTTGAAGAAGATGAAACGGAAGCAATTAAGGAAAGAGGTAGCACTGAAAAAGCTCCAGGAAGAGGAGGCGCGGTCGAACGATCCTGATGAGCAGAGGAGGATCCGGTTGATGGAGCTGGAGGAAGAGGAGAGGTCGGAGAGGGAGAGGAAGCTCTTCGAGGAGCGGGAGAGAGCGTGGATGGAGGTCATGGAGTTGAAGATGAAGAAGATGGCTGAGGAGGAAGAGGAGGAGCAGCGAAGGAGCGTGTTGGAGGAAGAATCGACGGCGCCGCAGGATGAAAATGAAAATGAGTTTGGTGAGGAAGATGGTTGGGAATACATAGAAGGGCCTGCAGAAGTAATCTGGAAAGGAGAAGAGATAATTCTGAAGAAGAAACTAATTAAGGTTCCTAAGAAGAGTGTTGAACCTCAGAAAAGCCTAGAGGATGCTCATAGGCCTACGTCAAACCCTCTTCCTCCACAATCTGAAGCTTTTACAGATTATAAGGATGCAACAATTTCATCTAGACAAGTGATTGAGGATGTTGCAAGCCAAGTGCCAAATTTTGGAACGGAACAGGCATCTCTCTCTCTTTCTCTCTTTTCCTCTGATAAATCACATTGTCCATTCCATCTAAAAACTGGAGCTTGTCGATTTGGTCAGCGTTGTAGCAGAATTCACTTCTACCCTGACAATTCATGTACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTGCTTGGGAGCAAGACGAGGGGCTGGAG

Coding sequence (CDS)

ATGGAGGAACCTAAATTCGAAGGAGAAGAAGAAGAGAAGCCTCAGGTGGGTATTGAAGCTGGCCCGCTTGAGAAGCCATGTTTGACAAAGAATCTGTGCAGGAAGGAGAAGAGGAAGGCGTTGAAGAAGATGAAACGGAAGCAATTAAGGAAAGAGGTAGCACTGAAAAAGCTCCAGGAAGAGGAGGCGCGGTCGAACGATCCTGATGAGCAGAGGAGGATCCGGTTGATGGAGCTGGAGGAAGAGGAGAGGTCGGAGAGGGAGAGGAAGCTCTTCGAGGAGCGGGAGAGAGCGTGGATGGAGGTCATGGAGTTGAAGATGAAGAAGATGGCTGAGGAGGAAGAGGAGGAGCAGCGAAGGAGCGTGTTGGAGGAAGAATCGACGGCGCCGCAGGATGAAAATGAAAATGAGTTTGGTGAGGAAGATGGTTGGGAATACATAGAAGGGCCTGCAGAAGTAATCTGGAAAGGAGAAGAGATAATTCTGAAGAAGAAACTAATTAAGGTTCCTAAGAAGAGTGTTGAACCTCAGAAAAGCCTAGAGGATGCTCATAGGCCTACGTCAAACCCTCTTCCTCCACAATCTGAAGCTTTTACAGATTATAAGGATGCAACAATTTCATCTAGACAAGTGATTGAGGATGTTGCAAGCCAAGTGCCAAATTTTGGAACGGAACAGGCATCTCTCTCTCTTTCTCTCTTTTCCTCTGATAAATCACATTGTCCATTCCATCTAAAAACTGGAGCTTGTCGATTTGGTCAGCGTTGTAGCAGAATTCACTTCTACCCTGACAATTCATGTACATTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTGCTTGGGAGCAAGACGAGGGGCTGGAG

Protein sequence

MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE

Homology

[Close]

BLAST of MS012559 vs. NCBI nr
Match: XP_022136848.1 (zinc finger CCCH domain-containing protein 5 [Momordica charantia])

HSP 1 Score: 514.6 bits (1324), Expect = 5.5e-142
Identity = 275/289 (95.16%), Postives = 276/289 (95.50%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE
Sbjct: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRR 120
           EEARSNDPDEQRRIRLMELEEEERSERERK FEERERAWMEVMELK K MAEEEEEEQRR
Sbjct: 61  EEARSNDPDEQRRIRLMELEEEERSERERKFFEERERAWMEVMELKKKNMAEEEEEEQRR 120

Query: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180
           SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL
Sbjct: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180

Query: 181 EDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSH 240
           EDAHRPTSNPLPPQSEAFTDYK+ATISSRQVIEDVASQVPNFGTEQ          DKSH
Sbjct: 181 EDAHRPTSNPLPPQSEAFTDYKNATISSRQVIEDVASQVPNFGTEQ----------DKSH 240

Query: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 279

[Close]

BLAST of MS012559 vs. NCBI nr
Match: XP_022984571.1 (zinc finger CCCH domain-containing protein 5 [Cucurbita maxima])

HSP 1 Score: 454.1 bits (1167), Expect = 8.8e-124
Identity = 246/289 (85.12%), Postives = 258/289 (89.27%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           M+EP+F GEEEEKPQ G EAGPLEKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MKEPEFVGEEEEKPQ-GTEAGPLEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRR 120
           EE R NDP+E+RRIRLMELEEEERSERERKLFEERERAW+E MELK KKMAEEEEEEQRR
Sbjct: 61  EEVRLNDPEEKRRIRLMELEEEERSERERKLFEERERAWLEAMELKKKKMAEEEEEEQRR 120

Query: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180
             LEEESTA Q ENENE  EEDGWEYIEGPAEVIWKGEEIILKKKLIK+PKK VEP+KSL
Sbjct: 121 RALEEESTARQAENENELNEEDGWEYIEGPAEVIWKGEEIILKKKLIKIPKKGVEPEKSL 180

Query: 181 EDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSH 240
           EDAHRPTSNPLPPQSE FTD K+A IS+RQVI+DVASQVPNFGTEQ          DKSH
Sbjct: 181 EDAHRPTSNPLPPQSEDFTDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKSH 240

Query: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           CPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 CPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 278

[Close]

BLAST of MS012559 vs. NCBI nr
Match: KAG6577355.1 (Zinc finger CCCH domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 449.5 bits (1155), Expect = 2.2e-122
Identity = 245/289 (84.78%), Postives = 256/289 (88.58%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEP+F GEEEEKPQ G EAG +EKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MEEPEFVGEEEEKPQ-GTEAGSIEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRR 120
           EEAR NDP+EQRRIRLMELEEEERSERERKLFEERERAW+E MELK K MAEEEEEEQRR
Sbjct: 61  EEARLNDPEEQRRIRLMELEEEERSERERKLFEERERAWLEAMELKKKTMAEEEEEEQRR 120

Query: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180
             LEEESTA Q ENENE  EEDGWEYIEGPAEVIWKG+EIILKKKLIKVPKK VEP+KSL
Sbjct: 121 RALEEESTARQAENENELSEEDGWEYIEGPAEVIWKGDEIILKKKLIKVPKKGVEPEKSL 180

Query: 181 EDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSH 240
           EDAHRPTSNPLPPQSE  TD K+A IS+RQVI+DVASQVPNFGTEQ          DKSH
Sbjct: 181 EDAHRPTSNPLPPQSEDITDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKSH 240

Query: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           CPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 CPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 278

[Close]

BLAST of MS012559 vs. NCBI nr
Match: XP_022929398.1 (zinc finger CCCH domain-containing protein 5 [Cucurbita moschata])

HSP 1 Score: 447.2 bits (1149), Expect = 1.1e-121
Identity = 246/290 (84.83%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEP+F GEEEEKPQ G EAG +EKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MEEPEFVGEEEEKPQ-GTEAGSIEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMEL-KMKKMAEEEEEEQR 120
           EEAR NDP+EQRRIRLMELEEEERSERERKLFEERERAW+E MEL K KKMAEEEEEEQR
Sbjct: 61  EEARLNDPEEQRRIRLMELEEEERSERERKLFEERERAWLEAMELNKKKKMAEEEEEEQR 120

Query: 121 RSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKS 180
           R  LEEESTA Q ENENE  EEDGWEYIEGPAEVIWKG+EIILKKKLIKVPKK VEP+KS
Sbjct: 121 RRALEEESTARQAENENELNEEDGWEYIEGPAEVIWKGDEIILKKKLIKVPKKGVEPEKS 180

Query: 181 LEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKS 240
           LEDAHRPTSNPLPPQSE  TD K+A IS+RQVI+DVASQVPNFGTEQ          DKS
Sbjct: 181 LEDAHRPTSNPLPPQSEDITDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKS 240

Query: 241 HCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           HCPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 HCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 279

[Close]

BLAST of MS012559 vs. NCBI nr
Match: XP_023552003.1 (zinc finger CCCH domain-containing protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441.4 bits (1134), Expect = 5.9e-120
Identity = 243/290 (83.79%), Postives = 255/290 (87.93%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEP+F GEEEEKPQ G EAG +EKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MEEPEFVGEEEEKPQ-GTEAGSIEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMA-EEEEEEQR 120
           EEA+ NDP+EQRRIRLMELEEEERSERERKLFEERERAW+E MELK KKMA EEEEEEQR
Sbjct: 61  EEAQLNDPEEQRRIRLMELEEEERSERERKLFEERERAWLEAMELKKKKMAEEEEEEEQR 120

Query: 121 RSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKS 180
           R  LEEESTA Q ENENE   EDGWEYIEGPAEVIWKG+EIILKKKLIKVPKK VEP+KS
Sbjct: 121 RRALEEESTARQAENENELNAEDGWEYIEGPAEVIWKGDEIILKKKLIKVPKKGVEPEKS 180

Query: 181 LEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKS 240
           LED HRPTSNPLPPQSE  TD K+A IS+RQVI+DVASQVPNFGTEQ          DKS
Sbjct: 181 LEDPHRPTSNPLPPQSEDITDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKS 240

Query: 241 HCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           HCPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 HCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 279

[Close]

BLAST of MS012559 vs. ExPASy Swiss-Prot
Match: Q9SY74 (Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=At1g10320 PE=2 SV=2)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 162/305 (53.11%), Postives = 207/305 (67.87%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPC-LTKNLCRKEKRKALKKMKRKQLRKEVALKKLQ 60
           ME+   + EEE   +   E    E+       + RKEKRKA+KK+KRKQ+RKE+A K+ +
Sbjct: 1   MEQANEKEEEERHEEAAGEKESFEESKEKAAEMSRKEKRKAMKKLKRKQVRKEIAAKERE 60

Query: 61  EEEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEE---EE 120
           E +A+ NDP EQ R++ +E E+  R E+E K FEE ERAW E ME+K KK  EEE   EE
Sbjct: 61  EAKAKLNDPAEQERLKAIEEEDARRREKELKDFEESERAWREAMEIKRKKEEEEEAKREE 120

Query: 121 EQRRSVLEEESTAPQDENENEFGE-EDG-WEYI-EGPAEVIWKGEEIILKKKLIKVPKKS 180
           E+RR    EE    +    +E GE EDG +EYI EGP E+I++G EIILKK  ++VPKKS
Sbjct: 121 EERRWKDLEELRKLEASGNDECGEDEDGEYEYIEEGPPEIIFQGNEIILKKNKVRVPKKS 180

Query: 181 V---------EPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGT 240
           V           +  L+ + RPTSNPLPP SEA  +Y++ + S++Q++E VA +VPNFGT
Sbjct: 181 VVQVDGHESSNAEFVLQISDRPTSNPLPPGSEASANYQNVS-SAQQILESVAQEVPNFGT 240

Query: 241 EQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQ 290
           EQ          DK+HCPFHLKTGACRFGQRCSR+HFYP+ SCTLL+KNMYNGPG+ WEQ
Sbjct: 241 EQ----------DKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQ 294

[Close]

BLAST of MS012559 vs. ExPASy Swiss-Prot
Match: Q6YVX9 (Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0557500 PE=2 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 4.1e-39
Identity = 107/257 (41.63%), Postives = 143/257 (55.64%), Query Frame = 0


Query: 34  RKEKRKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRLMELEEEERSERERKLFE 93
           RKE+R+  KK +R++ R+E A    +  EA + DP+E+RR+R +E  E + SER R+ FE
Sbjct: 18  RKERRRERKKERRRRARREAAEAARKAAEALAADPEEERRLRELEEAEADASERARRAFE 77

Query: 94  ERERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENENEFGEEDGWEYIE-GPAE 153
           + ER W+E    +  + A    EE   +  E+ S   +D++ N   E+D WEY+E GPAE
Sbjct: 78  DAERRWLEAAAARAAEKAAAAREES--TAPEDSSREYKDDHGNGTEEDDEWEYVEDGPAE 137

Query: 154 VIWKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVI 213
           +IW+G EI +KKK++KVPKK+ E Q                                   
Sbjct: 138 IIWEGNEITVKKKMVKVPKKAKENQP---------------------------------- 197

Query: 214 EDVASQVPNFGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIK 273
                                   DK+HCPFHLKTGACRFG RCSR+HFYPD SCTLL++
Sbjct: 198 ---------------------IQQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMR 217

Query: 274 NMYNGPGLAWEQDEGLE 290
           NMY+GPGLA EQDEGLE
Sbjct: 258 NMYSGPGLALEQDEGLE 217

[Close]

BLAST of MS012559 vs. ExPASy Swiss-Prot
Match: Q15696 (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens OX=9606 GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-07
Identity = 72/257 (28.02%), Postives = 116/257 (45.14%), Query Frame = 0


Query: 24  EKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRLMELEEEE 83
           EK    +    K+ R ALKK KRK+ R+E+A  +L++      + +E   I   +LEEE+
Sbjct: 5   EKMTFPEKPSHKKYRAALKKEKRKKRRQELA--RLRDSGLSQKEEEEDTFIEEQQLEEEK 64

Query: 84  RSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENENEFGEEDG 143
             ERER+   E    W+         + E++ +E+ R   E+E  A + + E E   ++ 
Sbjct: 65  LLERERQRLHEE---WL---------LREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQ 124

Query: 144 WEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSEAFTDYKD 203
           WE  +       + E    ++K  +  +K    QK L+ A     N    Q+        
Sbjct: 125 WEEQQ-------RKEREEEEQKRQEKKEKEEALQKMLDQAENELENGTTWQN-------- 184

Query: 204 ATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYP 263
                                 +  +   +   D+++CPF+ KTGACRFG RCSR H +P
Sbjct: 185 ---------------------PEPPVDFRVMEKDRANCPFYSKTGACRFGDRCSRKHNFP 211

Query: 264 DNSCTLLIKNMYNGPGL 281
            +S TLLIK+M+   G+
Sbjct: 245 TSSPTLLIKSMFTTFGM 211

[Close]

BLAST of MS012559 vs. ExPASy Swiss-Prot
Match: Q15695 (Putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens OX=9606 GN=ZRSR2P1 PE=5 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-06
Identity = 75/264 (28.41%), Postives = 117/264 (44.32%), Query Frame = 0


Query: 23  LEKPCLTKNLCRKEK------RKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRL 82
           LEK    K +   EK      R ALKK KRK+ R+E+A  +   +   S + +E   I  
Sbjct: 4   LEKMTFPKKMTFPEKPSHKKYRAALKKEKRKKRRQELARLR---DSGLSQEEEEDTFIEE 63

Query: 83  MELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENEN 142
            +LEEE+  ERER+   E    W+         + E++ +E+ R   E+E  A +   E 
Sbjct: 64  QQLEEEKLLERERERLHEE---WL---------LREQKAQEEFRIKKEKEEAAKKWLEEQ 123

Query: 143 EFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSE 202
           E   ++ W+  +       + ++   K+K   V K   + +  LE++     NP PP   
Sbjct: 124 ERKLKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKMLDQAENDLENS-TTWQNPEPP--- 183

Query: 203 AFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRC 262
                                           +   +   D+++CPF+ KTGACRFG RC
Sbjct: 184 --------------------------------VDFRVMEKDRANCPFYSKTGACRFGDRC 216

Query: 263 SRIHFYPDNSCTLLIKNMYNGPGL 281
           SR H +P +S TLLIK+M+   G+
Sbjct: 244 SRKHNFPTSSPTLLIKSMFTTFGM 216

[Close]

BLAST of MS012559 vs. ExPASy Swiss-Prot
Match: Q62377 (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus OX=10090 GN=Zrsr2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-06
Identity = 71/249 (28.51%), Postives = 121/249 (48.59%), Query Frame = 0


Query: 35  KEKRKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRLMELEEEERSERERKLFEE 94
           ++K  AL+K +R++ R++ AL +L+E E    + +E        L EE+R E ER L EE
Sbjct: 19  RKKYLALRKKERRKRRRQ-ALARLREAELAQKEEEED------PLAEEKRLEEERLLEEE 78

Query: 95  RERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVI 154
           R+R   E + L+ +K  EE   ++++   EEE+   ++E E +   E             
Sbjct: 79  RQRLHEEWL-LREEKAQEEFRAKKKK---EEEARKRKEELERKLKAE------------- 138

Query: 155 WKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIED 214
           W+ ++           ++  E QK  E   R                     + +++++ 
Sbjct: 139 WEEQQ---------RKEREEEEQKRQEKREREE-------------------AVQKMLDQ 198

Query: 215 VASQVPNFGTEQ---ASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLI 274
             +++ N GT Q     + + +   D+++CPF+ KTGACRFG RCSR H +P +S TLLI
Sbjct: 199 AENELENGGTWQNPEPPMDIRVLEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLI 215

Query: 275 KNMYNGPGL 281
           K M+   G+
Sbjct: 259 KGMFTTFGM 215

[Close]

BLAST of MS012559 vs. ExPASy TrEMBL
Match: A0A6J1C8M8 (zinc finger CCCH domain-containing protein 5 OS=Momordica charantia OX=3673 GN=LOC111008443 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.7e-142
Identity = 275/289 (95.16%), Postives = 276/289 (95.50%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE
Sbjct: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRR 120
           EEARSNDPDEQRRIRLMELEEEERSERERK FEERERAWMEVMELK K MAEEEEEEQRR
Sbjct: 61  EEARSNDPDEQRRIRLMELEEEERSERERKFFEERERAWMEVMELKKKNMAEEEEEEQRR 120

Query: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180
           SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL
Sbjct: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180

Query: 181 EDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSH 240
           EDAHRPTSNPLPPQSEAFTDYK+ATISSRQVIEDVASQVPNFGTEQ          DKSH
Sbjct: 181 EDAHRPTSNPLPPQSEAFTDYKNATISSRQVIEDVASQVPNFGTEQ----------DKSH 240

Query: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 279

[Close]

BLAST of MS012559 vs. ExPASy TrEMBL
Match: A0A6J1J5M6 (zinc finger CCCH domain-containing protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111482827 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.3e-124
Identity = 246/289 (85.12%), Postives = 258/289 (89.27%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           M+EP+F GEEEEKPQ G EAGPLEKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MKEPEFVGEEEEKPQ-GTEAGPLEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEEEEEQRR 120
           EE R NDP+E+RRIRLMELEEEERSERERKLFEERERAW+E MELK KKMAEEEEEEQRR
Sbjct: 61  EEVRLNDPEEKRRIRLMELEEEERSERERKLFEERERAWLEAMELKKKKMAEEEEEEQRR 120

Query: 121 SVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKSL 180
             LEEESTA Q ENENE  EEDGWEYIEGPAEVIWKGEEIILKKKLIK+PKK VEP+KSL
Sbjct: 121 RALEEESTARQAENENELNEEDGWEYIEGPAEVIWKGEEIILKKKLIKIPKKGVEPEKSL 180

Query: 181 EDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKSH 240
           EDAHRPTSNPLPPQSE FTD K+A IS+RQVI+DVASQVPNFGTEQ          DKSH
Sbjct: 181 EDAHRPTSNPLPPQSEDFTDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKSH 240

Query: 241 CPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           CPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 CPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 278

[Close]

BLAST of MS012559 vs. ExPASy TrEMBL
Match: A0A6J1ERZ7 (zinc finger CCCH domain-containing protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111435982 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 5.2e-122
Identity = 246/290 (84.83%), Postives = 257/290 (88.62%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVALKKLQE 60
           MEEP+F GEEEEKPQ G EAG +EKPC  +NLCRKEKRKALKK+KRKQLRKE ALKKLQE
Sbjct: 1   MEEPEFVGEEEEKPQ-GTEAGSIEKPCSLENLCRKEKRKALKKIKRKQLRKEEALKKLQE 60

Query: 61  EEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMEL-KMKKMAEEEEEEQR 120
           EEAR NDP+EQRRIRLMELEEEERSERERKLFEERERAW+E MEL K KKMAEEEEEEQR
Sbjct: 61  EEARLNDPEEQRRIRLMELEEEERSERERKLFEERERAWLEAMELNKKKKMAEEEEEEQR 120

Query: 121 RSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSVEPQKS 180
           R  LEEESTA Q ENENE  EEDGWEYIEGPAEVIWKG+EIILKKKLIKVPKK VEP+KS
Sbjct: 121 RRALEEESTARQAENENELNEEDGWEYIEGPAEVIWKGDEIILKKKLIKVPKKGVEPEKS 180

Query: 181 LEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLFSSDKS 240
           LEDAHRPTSNPLPPQSE  TD K+A IS+RQVI+DVASQVPNFGTEQ          DKS
Sbjct: 181 LEDAHRPTSNPLPPQSEDITDCKNAPISTRQVIDDVASQVPNFGTEQ----------DKS 240

Query: 241 HCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
           HCPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 HCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 279

[Close]

BLAST of MS012559 vs. ExPASy TrEMBL
Match: A0A1S3BUH0 (zinc finger CCCH domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103493302 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 6.0e-118
Identity = 239/295 (81.02%), Postives = 252/295 (85.42%), Query Frame = 0


Query: 1   MEEPKFEG------EEEEKPQVGIEAGPLEKPCLTKNLCRKEKRKALKKMKRKQLRKEVA 60
           MEEPK  G      EEEE+ +V        KPC   NLCRKEKRKALKK+KRKQLRKE+A
Sbjct: 1   MEEPKLGGGGGGGEEEEEEEEV--------KPCSVDNLCRKEKRKALKKIKRKQLRKELA 60

Query: 61  LKKLQEEEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEE 120
           LK+LQEEEAR NDP+EQRR++LMELEEEERSERERKLFEERERAWME MELK KKMAEEE
Sbjct: 61  LKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEE 120

Query: 121 EEEQRRSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVIWKGEEIILKKKLIKVPKKSV 180
           EEEQ+R  LEEEST  Q ENENEF EEDGWEYIEGPAE+IWKGEEIILKKKLIKVPKK V
Sbjct: 121 EEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGV 180

Query: 181 EPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGTEQASLSLSLF 240
           EP+KSLEDAHRPTSNPLPPQSEAFTDYK+  IS+RQVIEDVASQVPNFGTEQ        
Sbjct: 181 EPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQ-------- 240

Query: 241 SSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQDEGLE 290
             DKSHCPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNMYNGPGLAWEQDEGLE
Sbjct: 241 --DKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE 277

[Close]

BLAST of MS012559 vs. ExPASy TrEMBL
Match: A0A5D3BNF0 (Zinc finger CCCH domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00530 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 8.3e-112
Identity = 221/255 (86.67%), Postives = 232/255 (90.98%), Query Frame = 0


Query: 35  KEKRKALKKMKRKQLRKEVALKKLQEEEARSNDPDEQRRIRLMELEEEERSERERKLFEE 94
           KEKRKALKK+KRKQLRKE+ALK+LQEEEAR NDP+EQRR++LMELEEEERSERERKLFEE
Sbjct: 26  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEE 85

Query: 95  RERAWMEVMELKMKKMAEEEEEEQRRSVLEEESTAPQDENENEFGEEDGWEYIEGPAEVI 154
           RERAWME MELK KKMAEEEEEEQ+R  LEEEST  Q ENENEF EEDGWEYIEGPAE+I
Sbjct: 86  RERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEII 145

Query: 155 WKGEEIILKKKLIKVPKKSVEPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIED 214
           WKGEEIILKKKLIKVPKK VEP+KSLEDAHRPTSNPLPPQSEAFTDYK+  IS+RQVIED
Sbjct: 146 WKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIED 205

Query: 215 VASQVPNFGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNM 274
           VASQVPNFGTEQ          DKSHCPFHLKTGACRFGQRCSRIHFYPD SCTLLIKNM
Sbjct: 206 VASQVPNFGTEQ----------DKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNM 265

Query: 275 YNGPGLAWEQDEGLE 290
           YNGPGLAWEQDEGLE
Sbjct: 266 YNGPGLAWEQDEGLE 270

[Close]

BLAST of MS012559 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-67
Identity = 162/305 (53.11%), Postives = 207/305 (67.87%), Query Frame = 0


Query: 1   MEEPKFEGEEEEKPQVGIEAGPLEKPC-LTKNLCRKEKRKALKKMKRKQLRKEVALKKLQ 60
           ME+   + EEE   +   E    E+       + RKEKRKA+KK+KRKQ+RKE+A K+ +
Sbjct: 1   MEQANEKEEEERHEEAAGEKESFEESKEKAAEMSRKEKRKAMKKLKRKQVRKEIAAKERE 60

Query: 61  EEEARSNDPDEQRRIRLMELEEEERSERERKLFEERERAWMEVMELKMKKMAEEE---EE 120
           E +A+ NDP EQ R++ +E E+  R E+E K FEE ERAW E ME+K KK  EEE   EE
Sbjct: 61  EAKAKLNDPAEQERLKAIEEEDARRREKELKDFEESERAWREAMEIKRKKEEEEEAKREE 120

Query: 121 EQRRSVLEEESTAPQDENENEFGE-EDG-WEYI-EGPAEVIWKGEEIILKKKLIKVPKKS 180
           E+RR    EE    +    +E GE EDG +EYI EGP E+I++G EIILKK  ++VPKKS
Sbjct: 121 EERRWKDLEELRKLEASGNDECGEDEDGEYEYIEEGPPEIIFQGNEIILKKNKVRVPKKS 180

Query: 181 V---------EPQKSLEDAHRPTSNPLPPQSEAFTDYKDATISSRQVIEDVASQVPNFGT 240
           V           +  L+ + RPTSNPLPP SEA  +Y++ + S++Q++E VA +VPNFGT
Sbjct: 181 VVQVDGHESSNAEFVLQISDRPTSNPLPPGSEASANYQNVS-SAQQILESVAQEVPNFGT 240

Query: 241 EQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGLAWEQ 290
           EQ          DK+HCPFHLKTGACRFGQRCSR+HFYP+ SCTLL+KNMYNGPG+ WEQ
Sbjct: 241 EQ----------DKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQ 294

[Close]

BLAST of MS012559 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-09
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 222 FGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGL 281
           FGTE+          D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Sbjct: 9   FGTEK----------DRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM 57

[Close]

BLAST of MS012559 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-09
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 222 FGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGL 281
           FGTE+          D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Sbjct: 9   FGTEK----------DRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM 57

[Close]

BLAST of MS012559 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-09
Identity = 28/59 (47.46%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 222 FGTEQASLSLSLFSSDKSHCPFHLKTGACRFGQRCSRIHFYPDNSCTLLIKNMYNGPGL 281
           FGTE+          D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Sbjct: 9   FGTEK----------DRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM 57

The following BLAST results are available for this feature:

BLAST of MS012559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136848.1	5.5e-142	95.16	zinc finger CCCH domain-containing protein 5 [Momordica charantia]	[more]
XP_022984571.1	8.8e-124	85.12	zinc finger CCCH domain-containing protein 5 [Cucurbita maxima]	[more]
KAG6577355.1	2.2e-122	84.78	Zinc finger CCCH domain-containing protein 5, partial [Cucurbita argyrosperma su...	[more]
XP_022929398.1	1.1e-121	84.83	zinc finger CCCH domain-containing protein 5 [Cucurbita moschata]	[more]
XP_023552003.1	5.9e-120	83.79	zinc finger CCCH domain-containing protein 5 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS012559 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY74	1.1e-65	53.11	Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q6YVX9	4.1e-39	41.63	Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica OX...	[more]
Q15696	2.4e-07	28.02	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related prote...	[more]
Q15695	2.0e-06	28.41	Putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-rela...	[more]
Q62377	3.5e-06	28.51	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related prote...	[more]

BLAST of MS012559 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8M8	2.7e-142	95.16	zinc finger CCCH domain-containing protein 5 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1J5M6	4.3e-124	85.12	zinc finger CCCH domain-containing protein 5 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1ERZ7	5.2e-122	84.83	zinc finger CCCH domain-containing protein 5 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3BUH0	6.0e-118	81.02	zinc finger CCCH domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A5D3BNF0	8.3e-112	86.67	Zinc finger CCCH domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of MS012559 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10320.1	8.1e-67	53.11	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	4.5e-09	47.46	U2 snRNP auxiliary factor small subunit, putative	[more]
AT5G42820.2	4.5e-09	47.46	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	4.5e-09	47.46	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..126
None	No IPR available	COILS	Coil	Coil	coord: 41..66
None	No IPR available	COILS	Coil	Coil	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..143
None	No IPR available	PANTHER	PTHR12620:SF4	ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2	coord: 34..289
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 260..280 score: 44.16 coord: 241..260 score: 70.0
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 34..289
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 241..260 e-value: 5.9E-5 score: 22.9
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 235..263 score: 12.164144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS012559.1	MS012559.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding