MS012322 (gene) Bitter gourd (TR) v1

Overview
NameMS012322
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHomeobox-leucine zipper protein
Locationscaffold317: 339300 .. 343450 (+)
RNA-Seq ExpressionMS012322
SyntenyMS012322
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGAGATTTGGACATGAACCGAGCTCCGGAAGAAGAGGAATGGATGATGGGAAGCATGGAAGAGGATGAAGAAATTAGTAACAATAATAATGGTGGAGGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAGTACACTTCTCAAAATTCTCTCTCTTTTTTTCTTTTTTTCTTCTTTCCATTTTCTTCTCTCTCAGAAAGCATGATTTCGAAAAGATTTTTTTATTTTTTTTATTTAATTTGCAGAAACAGAAGGAAGCTCTGGCGGAAGTGTTGAAATTGAAGCCACGGCAAGTTGAGGTTTGGTTTCAGAACCGACGGGCCAGGTGGGTAAACTTTTTTAAAAAATGGTGTTTCATTATTCTACTTTGATTTTTCAGATTTGTTGAATTTATTTCGTTATTCTTCATCTTCTTCTTTTCTCCTTTCACTATATGGATTTTGAATTTGAGATTTTTTTTAGTTCAACATCATTCAGAATTTGAATCTTCCATTTTTTTTTTATCGAAGATATAGCCCTTGACTAGTTGAACTGTAACTATATTTTTAGGATTTTTGTTCATATACACCAGGAAGCATATTTGAAACCAAAAAGGATGTTTCTGAACCCTATGCATGGAAGAATTTGTTGTGAAATAATGGTTTGATAGAGTTAGGTTTAAATTCTATTTTAATCAATTGTCATTCTGGTTATACTATTTTCGTCTCTACTCTATACTAAATTTTAAGACGTTATATTTTAGTTTTTTTTATTTTAATAAAAATTATATTTTAGTTCTTTCAACTTTGCCTAAAAAACTATTAATCTTTTTATAAAAAGTATTTATCATAGAAATCCATTATAAATTCATCTTCTATTCATTTAGTAATTGAGCTTAGATAAAAACTTTTGTTTTTCTTTTTTACAAAATATATCCGTAAGATTAGTCGAGTTACACGGGATACTCATGAATATAGAAAAAAAAACTAAAAAATTTAAAAACTAAAAAAAAAAAACAATCTTCAAAAATTTATTTTTGTTTTTGAAATGTTGCTGAAAATTCAAATATGTTTTTAAGAGAGATGAAAGTCTAACTATTGAAATTCTACCAAAATAACCTAATCTTAAAAAACTAAAAATTAACAATCAAATGGTCATCAAACGATACCTTTCGATATTTATGGTGGATATTGAAACCACGTCTAGTTGGTTAGATATCGGACTTTAAAATAGATTTGAAATTTTGTCCTATCCTACCCATAATCTTTCTTGCCATCAACTCAAATAGAATATTTAAACTTTAGGAAATCAAAATATAATATTTACGAAACTTTATAGATTTAAATATTGTTTAAACCCTATGCTAAAACCTTTTTAGTATATATTCAAAAATCAAAAGAGAAAAAGTTTTGAAAAGTAATAACCAAACAAATTGAATAACAAGTATTTAATTAATCAACTCTTTAATTAATCAAACTAGGGTTAAACTAGAAAATTATTTTGTCCCTTTCTTGAATATTGAAATTATAAAATAATAATAGTGGAATTATAGCCCCCAAAGATATGCAATCCCACCAAGAGACAATAGGTGAACAAAATTATGAACATGTAATGATGTGGTTACCCCATTACTCTTAATTAGCTACTTCAATAACACATTGTCGAGGCTGCCCTTTGGCCTCGTGTGCTACTCTATCCCATATTAGATTAAATTAAATGTCTCTTTTTTGTCCTGTCTTTTCCCTACCCATGAAACTTTACCATATGTATTAGGTTAAATAATTGATCATTTAGAGTTATTTAGAAGTTTTAATTTGATGGTTATGATTTGGTTGTTGTGTTAAAGATCCATGTTAAAAAGATAGAGACTTAACAAAGGTTTATAGAGTTAAGGATGAATAAACCACCACTCAACCCAAAAACTTAAACCGATAGGTTGGATAAAGTTAATTCCTATATAGATATTTCAATATATAATATACATGAGCTACTTCTCTCATTAATAATTGGTTTTGGTATCAAGGTTCAGTAAGCTCAAACAAGTATATGGTAAAAAACTGGGATCCAAGCCAAAATTGGTGAGACCAATAGAGTCACAATTTTGACGGGCATGTTAAAAATCTCACATAATTAAAAAGATAAGAGATCTAACAAAGGTTTATAATATACATACGTTACTTTGCTCTATACTCATTATTTCTAGATGGAAAAGTAGGTCTTTATTCCATCACTTCTCTGTTCCTCTTTCTGATGATCAAAAACTCTAACCCTAGAGCTCAATGTCCTTTTACTCGATTTACTTAGTTCAAATCCTAATGCGTTCACCACATAGGTTGAATGTTAGGTCAACGTTTCTCTCTGCCACGTTTGAAGAAAAATGTGTCACGTAAAAAAATAATAACATTTAGTCGAGATGTTTTGCGAGAGATTTAGCCCAATTTTAAAGATTCTATTGAAACTTTCGGAACATATAGGGACCAAATTTTTATAGCTGGTTTATACATAATGGACGAAATTGCTAACTCTTATTATTTGGTCCTATATATATAAAAGTTTATTTTTTCCTTCAAATTCACCTGAATTTCAATATTATAAAATCATGTTCTTGAGATAACTATCCTTTTACCTTTTGCTCAAGATTTCTAAAGATTTAGCATCAACATAACTTATTTTGATAAAATTAATAGATGAAGATAACAAGTCCGTTATTGGGTATTATATGATGTGATGTTTCTTTTTCTAATTTTCATTTTCTTTAATATTAATGGAAACATTTACAAATTGGGTACAAGAAACAGAAAAAAAATGTCATTATGCTATGTGGTTTGAAGCTGTTTGAAATAATTATTATGTCAGTTATTATGGGTACAAGAATAAATAAAAATCAGAAAATTAAAGTTAATTGGTGAAGCAAAAACATTTTGCATGGACAAGGGTAAATTTATATACCAATTTAATTGTTTTGGTAATAATTAGAATCCAAGAAGACAATAATGATGTTCTTGTCTTTCATGTAAAAGGGTTTCAAATTGCATTTATTTCACTTTCACATCTCTTTTTTTCTTGTCCTTCTTTTTGTTAGGCACAATTATTGATATTTCTTGTAGTCAGAACATACTGATTTGACGATATACTCCATACTTTTCAAAGTATATTATTGCATTTACTTTTCCTTTGTATTAATTAGGCATTTATTTGGGCATGAATTACATAATTAAGAAAATAACTCAAAAATATATCAATGATAATCAACTCATTGATTTAAGTTTTCAATGGAAATTTAAGTTACCCTTTTAGTTCTTCTATGCTGGTTTCAATTTTTTGCTTGTAAAAGTTTCATTATAATCTGTTATGTTATCTAGTTAAATTTCTAGAAACATATCCATTAAAATTATTTATTGGATGTTAACAATTTTTGTAGATATTGTTATCTTACACGTAGTAAAGAAAAGTGATACGCTGATGTTTAGCTTAGAAAATCATGTGACTTTTTATAAAGAGGATCAACTCAGAAGATCAATGAAAAGATATCTCTTGTTGCACATCTTTGAAACTAATTAGACGATTAGGGGAGGGTTACGTTTGGGTTTCGGTTTCGGTTTGGGTGAGTTTGACTTAAGATATCAAACCTATATTTGTTCCGTGATATTCACGCCTAGGTTTGTTCGATAAATTCATGGGTCGTTTCAATACAATAACTTCAAATTTACTCCCGCCAAATCCATTTTCTCACATTATTTTCTTAAAATTAGGCTTTCTAAACCTGCATCTTAAATACAAGCCTATTAGACTCGGGATTTTCAAGTTTTAAGATGCTAAACTTTTAAAACTATAGAAACTAAACGTAAAATCCAATATCAAACCATGACGACCAAATAAAAATAACATTGAAATGTGCTGAAACAGGAGCAAGCTAAAGCAGACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGTTATTGACCGAGCAAAACAAAAGACTACAGAAGGAGGTCGAGGAGCTAAGGGCGATGAAGGCGCCGCCGCCAACGGTGATCTCACCGCACAGCTGCGAGCCGCTTCCGGCGTCGAACCTCACCATGTGCCCTCGCTGCGAGCGCGTGACCACCACC

mRNA sequence

GTGAGAGATTTGGACATGAACCGAGCTCCGGAAGAAGAGGAATGGATGATGGGAAGCATGGAAGAGGATGAAGAAATTAGTAACAATAATAATGGTGGAGGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAGAAGGAAGCTCTGGCGGAAGTGTTGAAATTGAAGCCACGGCAAGTTGAGGTTTGGTTTCAGAACCGACGGGCCAGGAGCAAGCTAAAGCAGACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGTTATTGACCGAGCAAAACAAAAGACTACAGAAGGAGGTCGAGGAGCTAAGGGCGATGAAGGCGCCGCCGCCAACGGTGATCTCACCGCACAGCTGCGAGCCGCTTCCGGCGTCGAACCTCACCATGTGCCCTCGCTGCGAGCGCGTGACCACCACC

Coding sequence (CDS)

GTGAGAGATTTGGACATGAACCGAGCTCCGGAAGAAGAGGAATGGATGATGGGAAGCATGGAAGAGGATGAAGAAATTAGTAACAATAATAATGGTGGAGGCCATCCAAGGAAGAAGCTGCGTTTGACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAGAAGGAAGCTCTGGCGGAAGTGTTGAAATTGAAGCCACGGCAAGTTGAGGTTTGGTTTCAGAACCGACGGGCCAGGAGCAAGCTAAAGCAGACGGAGATGGAGTGCGAGTATCTAAAGAGATGGTTCGGGTTATTGACCGAGCAAAACAAAAGACTACAGAAGGAGGTCGAGGAGCTAAGGGCGATGAAGGCGCCGCCGCCAACGGTGATCTCACCGCACAGCTGCGAGCCGCTTCCGGCGTCGAACCTCACCATGTGCCCTCGCTGCGAGCGCGTGACCACCACC

Protein sequence

VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT
Homology
[Close]
BLAST of MS012322 vs. NCBI nr
Match: XP_022150060.1 (homeobox-leucine zipper protein HOX3-like [Momordica charantia])

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQ+FRQNHTL
Sbjct: 36  VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQTFRQNHTL 95

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKEALAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV
Sbjct: 96  NPKQKEALAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 155

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 156 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 194

[Close]
BLAST of MS012322 vs. NCBI nr
Match: XP_022976582.1 (homeobox-leucine zipper protein HOX3-like [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 148/159 (93.08%), Postives = 151/159 (94.97%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAP+EEEWMMGSMEEDEE    NN G HPRKKLRLTKEQSHLLEQSFRQNHTL
Sbjct: 33  VRDLDMNRAPDEEEWMMGSMEEDEE----NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTL 92

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKE+LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEV
Sbjct: 93  NPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEV 152

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 153 EELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. NCBI nr
Match: KAG6599884.1 (Homeobox-leucine zipper protein HOX3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75
Identity = 148/159 (93.08%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAP+EEEWMMGSMEEDEE    NN G HPRKKLRLTKEQSHLLEQSFRQNHTL
Sbjct: 27  VRDLDMNRAPDEEEWMMGSMEEDEE----NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTL 86

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKE LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEV
Sbjct: 87  NPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEV 146

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 147 EELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 181

[Close]
BLAST of MS012322 vs. NCBI nr
Match: XP_022942450.1 (homeobox-leucine zipper protein HOX3-like [Cucurbita moschata] >XP_023534345.1 homeobox-leucine zipper protein HOX3-like [Cucurbita pepo subsp. pepo] >KAG7030569.1 Homeobox-leucine zipper protein HOX3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 5.4e-75
Identity = 148/159 (93.08%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAP+EEEWMMGSMEEDEE    NN G HPRKKLRLTKEQSHLLEQSFRQNHTL
Sbjct: 33  VRDLDMNRAPDEEEWMMGSMEEDEE----NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTL 92

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKE LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEV
Sbjct: 93  NPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEV 152

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 153 EELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. NCBI nr
Match: XP_038893065.1 (homeobox-leucine zipper protein HOX3-like [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 6.0e-74
Identity = 147/158 (93.04%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 2   RDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLN 61
           RDLDMN+AP+EEEWMMGSMEEDEE   NNNG  +PRKKLRLTKEQSHLLEQSFRQNHTLN
Sbjct: 33  RDLDMNKAPDEEEWMMGSMEEDEE---NNNGSINPRKKLRLTKEQSHLLEQSFRQNHTLN 92

Query: 62  PKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 121
           PKQKE LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE
Sbjct: 93  PKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 152

Query: 122 ELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           ELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 153 ELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match: Q9XH38 (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica OX=39946 GN=HOX3 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 117/160 (73.12%), Postives = 134/160 (83.75%), Query Frame = 0 

Query: 1   VRDLDMNR---APEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQN 60
           +RDLD+N+     EEEE+ MGS+EEDEE      GG H  KKLRL+KEQS LLE+SFR N
Sbjct: 40  MRDLDINQPASGGEEEEFPMGSVEEDEE--ERGVGGPHRPKKLRLSKEQSRLLEESFRLN 99

Query: 61  HTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQ 120
           HTL PKQKEALA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ
Sbjct: 100 HTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQ 159

Query: 121 KEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
           +EVEELRAM+  PPTV+SPH+ +PLPAS LTMCPRCER+T
Sbjct: 160 REVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERIT 197

[Close]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match: Q0JKX1 (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX3 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-55
Identity = 117/160 (73.12%), Postives = 134/160 (83.75%), Query Frame = 0 

Query: 1   VRDLDMNR---APEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQN 60
           +RDLD+N+     EEEE+ MGS+EEDEE      GG H  KKLRL+KEQS LLE+SFR N
Sbjct: 40  MRDLDINQPASGGEEEEFPMGSVEEDEE--ERGVGGPHRPKKLRLSKEQSRLLEESFRLN 99

Query: 61  HTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQ 120
           HTL PKQKEALA  LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FG LTE+N+RLQ
Sbjct: 100 HTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQ 159

Query: 121 KEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
           +EVEELRAM+  PPTV+SPH+ +PLPAS LTMCPRCER+T
Sbjct: 160 REVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERIT 197

[Close]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match: Q8S9N6 (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana OX=3702 GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-47
Identity = 107/154 (69.48%), Postives = 119/154 (77.27%), Query Frame = 0 

Query: 4   LDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPK 63
           LDMNR P  E+       +DEE S +++G   PRKKLRLT+EQS LLE SFRQNHTLNPK
Sbjct: 112 LDMNRLPSSED------GDDEEFS-HDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPK 171

Query: 64  QKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEEL 123
           QKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEEL
Sbjct: 172 QKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEEL 231

Query: 124 RAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
           RAMK  P TV S        AS+LTMCPRCERVT
Sbjct: 232 RAMKVGPTTVNS--------ASSLTMCPRCERVT 250

[Close]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match: Q8GXM7 (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana OX=3702 GN=ATHB-X PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.1e-45
Identity = 103/160 (64.38%), Postives = 116/160 (72.50%), Query Frame = 0 

Query: 1   VRDLDMNRAP---EEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQN 60
           +RD D+N+ P   E+ EWM+G+     E  +++N GG  RKKLRLTKEQSHLLE+SF QN
Sbjct: 31  MRDFDINQTPKTEEDREWMIGATPHVNE--DDSNSGGRRRKKLRLTKEQSHLLEESFIQN 90

Query: 61  HTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQ 120
           HTL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ
Sbjct: 91  HTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQ 150

Query: 121 KEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
            EVEELRA+K             P   S LTMCPRCERVT
Sbjct: 151 IEVEELRALK-------------PSSTSALTMCPRCERVT 175

[Close]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match: P46665 (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 PE=2 SV=3)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-35
Identity = 81/132 (61.36%), Postives = 101/132 (76.52%), Query Frame = 0 

Query: 28  NNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKEALAEVLKLKPRQVEVWFQNRR 87
           +N++  G  RKKLRL+K+QS  LE SF+++ TLNPKQK ALA+ L L+PRQVEVWFQNRR
Sbjct: 180 DNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRR 239

Query: 88  ARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPPPTVISPHSCEPLPASNL 147
           AR+KLKQTE++CEYLKR    LTE+N+RLQKEV+ELR +K   P  +       LPA+ L
Sbjct: 240 ARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTL 299

Query: 148 TMCPRCERVTTT 160
           TMCP CERV T+
Sbjct: 300 TMCPSCERVATS 305

[Close]
BLAST of MS012322 vs. ExPASy TrEMBL
Match: A0A6J1D7F8 (homeobox-leucine zipper protein HOX3-like OS=Momordica charantia OX=3673 GN=LOC111018328 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQ+FRQNHTL
Sbjct: 36  VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQTFRQNHTL 95

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKEALAE+LKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV
Sbjct: 96  NPKQKEALAEMLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 155

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 156 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 194

[Close]
BLAST of MS012322 vs. ExPASy TrEMBL
Match: A0A6J1IG52 (homeobox-leucine zipper protein HOX3-like OS=Cucurbita maxima OX=3661 GN=LOC111476932 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75
Identity = 148/159 (93.08%), Postives = 151/159 (94.97%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAP+EEEWMMGSMEEDEE    NN G HPRKKLRLTKEQSHLLEQSFRQNHTL
Sbjct: 33  VRDLDMNRAPDEEEWMMGSMEEDEE----NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTL 92

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKE+LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEV
Sbjct: 93  NPKQKESLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEV 152

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 153 EELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. ExPASy TrEMBL
Match: A0A6J1FWC2 (homeobox-leucine zipper protein HOX3-like OS=Cucurbita moschata OX=3662 GN=LOC111447486 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.6e-75
Identity = 148/159 (93.08%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   VRDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTL 60
           VRDLDMNRAP+EEEWMMGSMEEDEE    NN G HPRKKLRLTKEQSHLLEQSFRQNHTL
Sbjct: 33  VRDLDMNRAPDEEEWMMGSMEEDEE----NNSGSHPRKKLRLTKEQSHLLEQSFRQNHTL 92

Query: 61  NPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEV 120
           NPKQKE LAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK+LQKEV
Sbjct: 93  NPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEV 152

Query: 121 EELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           EELRAMK  PPTVISPHSCEPLPASNLTMCPRCERVTTT
Sbjct: 153 EELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. ExPASy TrEMBL
Match: A0A0A0KJE2 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G065660 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.4e-74
Identity = 145/158 (91.77%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 2   RDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLN 61
           RDLDMN+AP+EEEWMMG+MEEDEEI  NNNG  +PRKKLRLTKEQSHLLEQSFRQNHTLN
Sbjct: 33  RDLDMNKAPDEEEWMMGTMEEDEEI--NNNGSNNPRKKLRLTKEQSHLLEQSFRQNHTLN 92

Query: 62  PKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 121
           PKQKE LAEVLKLKPRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE
Sbjct: 93  PKQKETLAEVLKLKPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 152

Query: 122 ELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           ELRAMK  PPTVISPHS EPLPASNLTMCPRCERVTTT
Sbjct: 153 ELRAMKVAPPTVISPHSSEPLPASNLTMCPRCERVTTT 188

[Close]
BLAST of MS012322 vs. ExPASy TrEMBL
Match: A0A1S3BYV1 (homeobox-leucine zipper protein HOX3-like OS=Cucumis melo OX=3656 GN=LOC103495072 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.5e-73
Identity = 145/158 (91.77%), Postives = 149/158 (94.30%), Query Frame = 0 

Query: 2   RDLDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLN 61
           RDLDMN+AP+EEEWMMG+MEEDEEI  NNNG  +PRKKLRLTKEQSHLLEQSFRQNHTLN
Sbjct: 32  RDLDMNKAPDEEEWMMGTMEEDEEI--NNNGNNNPRKKLRLTKEQSHLLEQSFRQNHTLN 91

Query: 62  PKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 121
           PKQKE LAEVL LKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE
Sbjct: 92  PKQKETLAEVLNLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVE 151

Query: 122 ELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVTTT 160
           ELRAMK  PPTVISPHSCEPL ASNLTMCPRCERVTTT
Sbjct: 152 ELRAMKVAPPTVISPHSCEPLLASNLTMCPRCERVTTT 187

[Close]
BLAST of MS012322 vs. TAIR 10
Match: AT2G01430.1 (homeobox-leucine zipper protein 17 )

HSP 1 Score: 191.0 bits (484), Expect = 7.1e-49
Identity = 107/154 (69.48%), Postives = 119/154 (77.27%), Query Frame = 0 

Query: 4   LDMNRAPEEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPK 63
           LDMNR P  E+       +DEE S +++G   PRKKLRLT+EQS LLE SFRQNHTLNPK
Sbjct: 112 LDMNRLPSSED------GDDEEFS-HDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPK 171

Query: 64  QKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEEL 123
           QKE LA+ L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFG LTE+N RL +EVEEL
Sbjct: 172 QKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEEL 231

Query: 124 RAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
           RAMK  P TV S        AS+LTMCPRCERVT
Sbjct: 232 RAMKVGPTTVNS--------ASSLTMCPRCERVT 250

[Close]
BLAST of MS012322 vs. TAIR 10
Match: AT1G70920.1 (homeobox-leucine zipper protein 18 )

HSP 1 Score: 181.8 bits (460), Expect = 4.3e-46
Identity = 103/160 (64.38%), Postives = 116/160 (72.50%), Query Frame = 0 

Query: 1   VRDLDMNRAP---EEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQN 60
           +RD D+N+ P   E+ EWM+G+     E  +++N GG  RKKLRLTKEQSHLLE+SF QN
Sbjct: 31  MRDFDINQTPKTEEDREWMIGATPHVNE--DDSNSGGRRRKKLRLTKEQSHLLEESFIQN 90

Query: 61  HTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQ 120
           HTL PKQK+ LA  LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFG L EQN+RLQ
Sbjct: 91  HTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQ 150

Query: 121 KEVEELRAMKAPPPTVISPHSCEPLPASNLTMCPRCERVT 158
            EVEELRA+K             P   S LTMCPRCERVT
Sbjct: 151 IEVEELRALK-------------PSSTSALTMCPRCERVT 175

[Close]
BLAST of MS012322 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 81/132 (61.36%), Postives = 101/132 (76.52%), Query Frame = 0 

Query: 28  NNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKEALAEVLKLKPRQVEVWFQNRR 87
           +N++  G  RKKLRL+K+QS  LE SF+++ TLNPKQK ALA+ L L+PRQVEVWFQNRR
Sbjct: 180 DNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRR 239

Query: 88  ARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPPPTVISPHSCEPLPASNL 147
           AR+KLKQTE++CEYLKR    LTE+N+RLQKEV+ELR +K   P  +       LPA+ L
Sbjct: 240 ARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTL 299

Query: 148 TMCPRCERVTTT 160
           TMCP CERV T+
Sbjct: 300 TMCPSCERVATS 305

[Close]
BLAST of MS012322 vs. TAIR 10
Match: AT3G60390.1 (homeobox-leucine zipper protein 3 )

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-34
Identity = 83/150 (55.33%), Postives = 107/150 (71.33%), Query Frame = 0 

Query: 11  EEEEWMMGSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKEALAE 70
           E     +G   +DE+   + NG    RKKLRL+KEQ+ +LE++F+++ TLNPKQK ALA+
Sbjct: 137 ERASCSLGGGSDDED--GSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAK 196

Query: 71  VLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELRAMKAPP 130
            L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LT++N+RLQKEV ELRA+K   
Sbjct: 197 QLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALK--- 256

Query: 131 PTVISPHSCEPL-PASNLTMCPRCERVTTT 160
              +SPH    + P + LTMCP CERV  T
Sbjct: 257 ---LSPHLYMHMKPPTTLTMCPSCERVAVT 278

[Close]
BLAST of MS012322 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 142.1 bits (357), Expect = 3.8e-34
Identity = 88/166 (53.01%), Postives = 114/166 (68.67%), Query Frame = 0 

Query: 2   RDLDMNRAPEEEEWMM-------GSMEEDEEISNNNNGGGHPRKKLRLTKEQSHLLEQSF 61
           RDL + R  +E E          GS   D+E   N +G    RKKLRL+K+Q+ +LE++F
Sbjct: 123 RDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGS---RKKLRLSKDQALVLEETF 182

Query: 62  RQNHTLNPKQKEALAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNK 121
           +++ TLNPKQK ALA+ L L+ RQVEVWFQNRRAR+KLKQTE++CEYLKR    LTE+N+
Sbjct: 183 KEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENR 242

Query: 122 RLQKEVEELRAMKAPPPTVISPH-SCEPLPASNLTMCPRCERVTTT 160
           RLQKEV ELRA+K      +SPH      P + LTMCP CERV+++
Sbjct: 243 RLQKEVSELRALK------LSPHLYMHMTPPTTLTMCPSCERVSSS 279

The following BLAST results are available for this feature:
BLAST of MS012322 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150060.13.5e-8298.74homeobox-leucine zipper protein HOX3-like [Momordica charantia][more]
XP_022976582.14.2e-7593.08homeobox-leucine zipper protein HOX3-like [Cucurbita maxima][more]
KAG6599884.15.4e-7593.08Homeobox-leucine zipper protein HOX3, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022942450.15.4e-7593.08homeobox-leucine zipper protein HOX3-like [Cucurbita moschata] >XP_023534345.1 h... [more]
XP_038893065.16.0e-7493.04homeobox-leucine zipper protein HOX3-like [Benincasa hispida][more]
BLAST of MS012322 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XH381.3e-5573.13Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica OX=39946 GN=H... [more]
Q0JKX11.3e-5573.13Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q8S9N61.0e-4769.48Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana OX=3702 GN=ATHB-... [more]
Q8GXM76.1e-4564.38Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana OX=3702 GN=ATHB-X... [more]
P466651.5e-3561.36Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 P... [more]
BLAST of MS012322 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7F81.7e-8298.74homeobox-leucine zipper protein HOX3-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1IG522.0e-7593.08homeobox-leucine zipper protein HOX3-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1FWC22.6e-7593.08homeobox-leucine zipper protein HOX3-like OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A0A0KJE28.4e-7491.77Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G065660 PE... [more]
A0A1S3BYV12.5e-7391.77homeobox-leucine zipper protein HOX3-like OS=Cucumis melo OX=3656 GN=LOC10349507... [more]
BLAST of MS012322 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01430.17.1e-4969.48homeobox-leucine zipper protein 17 [more]
AT1G70920.14.3e-4664.38homeobox-leucine zipper protein 18 [more]
AT5G06710.11.1e-3661.36homeobox from Arabidopsis thaliana [more]
AT3G60390.12.2e-3455.33homeobox-leucine zipper protein 3 [more]
AT2G44910.13.8e-3453.01homeobox-leucine zipper protein 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..126
NoneNo IPR availableGENE3D1.10.10.60coord: 17..100
e-value: 5.3E-20
score: 72.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR45714FAMILY NOT NAMEDcoord: 1..159
NoneNo IPR availablePANTHERPTHR45714:SF8HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17coord: 1..159
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 93..136
e-value: 1.9E-19
score: 80.6
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 93..127
e-value: 1.2E-8
score: 35.0
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 35..97
e-value: 4.1E-18
score: 76.2
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 37..91
e-value: 5.6E-17
score: 61.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 33..93
score: 17.167442
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 36..94
e-value: 3.28783E-16
score: 66.498
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 68..91
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 19..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS012322.1MS012322.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0043565 sequence-specific DNA binding