MS009140 (gene) Bitter gourd (TR) v1

Overview


Name	MS009140
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ferredoxin
Location	scaffold220: 198216 .. 198671 (+)
RNA-Seq Expression	MS009140
Synteny	MS009140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTGAACATGTCGACTATCAGTCTCTCGACATCCTGCATGTTCAAAAGTGCTACACCAAGGAGATCCTATGCCCTAGTGCAGAGGCCATCTTCCTTGGGTGCCGTTAGGAATGTATCCCGGGCATTTGGCTTGAAGTCTTCCTCATTCAGAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATCGGACCAAACGGTGAAGAGAATGAGTTTGAAGCCCCCGACGATGCTTACATTCTTGACTCGGCTGAGAATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACATGTGCTGGGCAAATAGTTTCTGGGGAAGTTGACCAGTCGGATGGATCGTTCTTGGACGATAATCAGATGGAGAAGGGGTATCTGCTAACGTGCGTGGCATATCCACAATCTGACTGCGTCATCCACACGCACAAGGAAGGTGATTTGTAC

mRNA sequence

ACTCTGAACATGTCGACTATCAGTCTCTCGACATCCTGCATGTTCAAAAGTGCTACACCAAGGAGATCCTATGCCCTAGTGCAGAGGCCATCTTCCTTGGGTGCCGTTAGGAATGTATCCCGGGCATTTGGCTTGAAGTCTTCCTCATTCAGAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATCGGACCAAACGGTGAAGAGAATGAGTTTGAAGCCCCCGACGATGCTTACATTCTTGACTCGGCTGAGAATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACATGTGCTGGGCAAATAGTTTCTGGGGAAGTTGACCAGTCGGATGGATCGTTCTTGGACGATAATCAGATGGAGAAGGGGTATCTGCTAACGTGCGTGGCATATCCACAATCTGACTGCGTCATCCACACGCACAAGGAAGGTGATTTGTAC

Coding sequence (CDS)

ACTCTGAACATGTCGACTATCAGTCTCTCGACATCCTGCATGTTCAAAAGTGCTACACCAAGGAGATCCTATGCCCTAGTGCAGAGGCCATCTTCCTTGGGTGCCGTTAGGAATGTATCCCGGGCATTTGGCTTGAAGTCTTCCTCATTCAGAGTGTCAGCAATGGCTTCTTACAAAGTGAAATTAATCGGACCAAACGGTGAAGAGAATGAGTTTGAAGCCCCCGACGATGCTTACATTCTTGACTCGGCTGAGAATGCTGGATTGGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACATGTGCTGGGCAAATAGTTTCTGGGGAAGTTGACCAGTCGGATGGATCGTTCTTGGACGATAATCAGATGGAGAAGGGGTATCTGCTAACGTGCGTGGCATATCCACAATCTGACTGCGTCATCCACACGCACAAGGAAGGTGATTTGTAC

Protein sequence

TLNMSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY

Homology

[Close]

BLAST of MS009140 vs. NCBI nr
Match: XP_022134447.1 (ferredoxin, root R-B2-like [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLI 63
           MSTISLSTSCM KSATPRRSYALVQRPSSLGA RNVSRAFGLKSSSFRVSAMASYKVKLI
Sbjct: 1   MSTISLSTSCMVKSATPRRSYALVQRPSSLGAFRNVSRAFGLKSSSFRVSAMASYKVKLI 60

Query: 64  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 123
           GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 120

Query: 124 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           QMEKGYLLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of MS009140 vs. NCBI nr
Match: XP_023551682.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 5.0e-70
Identity = 134/149 (89.93%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLI 63
           MS I+L TSC+ KSATPRRS ALVQRPSSLG+VR+VSRAFGLKSSSF+V+AMA+YKVKLI
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMAAYKVKLI 60

Query: 64  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 123
           GPNGEENEFEAPDDAYILDSAE AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDDN
Sbjct: 61  GPNGEENEFEAPDDAYILDSAEEAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDDN 120

Query: 124 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           QMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of MS009140 vs. NCBI nr
Match: KAG6578819.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 134/151 (88.74%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 3   NMSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMA-SYKVK 62
           +MS I+L TSC+ KSATPRRS ALVQRPSSLG+VR+VSRAFGLKSSSF+V+AMA +YKVK
Sbjct: 186 SMSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVK 245

Query: 63  LIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLD 122
           LIGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLD
Sbjct: 246 LIGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLD 305

Query: 123 DNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           DNQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 306 DNQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 336

[Close]

BLAST of MS009140 vs. NCBI nr
Match: KAG7016344.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 9.5e-69
Identity = 134/150 (89.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMA-SYKVKL 63
           MS I+L TSC+ KSATPRRS ALVQRPSSLG+VR+VSRAFGLKSSSF+V+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 64  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDD 123
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 124 NQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           NQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of MS009140 vs. NCBI nr
Match: XP_022992802.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R-B2-like [Cucurbita maxima])

HSP 1 Score: 268.5 bits (685), Expect = 3.6e-68
Identity = 133/150 (88.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMA-SYKVKL 63
           MS I+L TSC+ KSATPRRS ALVQRPSSLG+ R+VSRAFGLKSSSF+V+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 64  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDD 123
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 124 NQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           NQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of MS009140 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-49
Identity = 100/152 (65.79%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 4   MSTISLSTSC--MFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSS-SFRVSAMASYKV 63
           MST + +TSC  +    T + S   V+ PSSL     V++   LK+S    VSAMA YKV
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 64  KLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFL 123
           KL+GP GEE+EF+APDDAYILD+AE AG++LPYSCRAGACSTCAG+I SG VDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 124 DDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           DD Q E+GY+LTCV+YP+SDCVIHTHKEGDLY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152

[Close]

BLAST of MS009140 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.3e-46
Identity = 94/154 (61.04%), Postives = 118/154 (76.62%), Query Frame = 0


Query: 1   TLNMSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSS--SFRVSAMASY 60
           T+ +S+ S+ T  + +S T  +         S+G+ + VSR+FGLK S  S   +  A Y
Sbjct: 3   TVRISSTSM-TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVY 62

Query: 61  KVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGS 120
           KVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQIVSG VDQSDGS
Sbjct: 63  KVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGS 122

Query: 121 FLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           FL+D+ +EKGY+LTCVAYPQSDCVIHTHKE +L+
Sbjct: 123 FLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of MS009140 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-41
Identity = 76/97 (78.35%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 56  ASYKVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQS 115
           A YKVKLIGP GEENEFE  DD +ILD+AE AG+DLPYSCRAGACSTCAGQIV G+VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 116 DGSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           +GSFL+D+  EKG++LTCVAYPQSDCVIHTHKE +L+
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98

[Close]

BLAST of MS009140 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-41
Identity = 79/124 (63.71%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 31  SSLGAVRNVSRAFGLKSSSFRVSAMAS--YKVKLIGPNGEENEFEAPDDAYILDSAENAG 90
           S  G  R  +RA G + SS  V++ A+  +KVKL+GP+G E+EFEAPDD YIL++AE AG
Sbjct: 32  SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAG 91

Query: 91  LDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKE 150
           ++LP+SCRAG+CSTCAG++ +GEVDQS+GSFLDD QM +GYLLTC++YP++DCVIHTHKE
Sbjct: 92  VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKE 151

Query: 151 GDLY 153
            DLY
Sbjct: 152 EDLY 155

[Close]

BLAST of MS009140 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-40
Identity = 75/97 (77.32%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 56  ASYKVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQS 115
           A YKVKLIGP+G+ENEF+ PDD YILD+AE AG+DLPYSCRAGACSTCAG+I  G+VDQS
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 116 DGSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           DGSFL+D+  EKGY+LTCVAYPQSD VIHTHKE +L+
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98

[Close]

BLAST of MS009140 vs. ExPASy TrEMBL
Match: A0A6J1BZM5 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 147/149 (98.66%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLI 63
           MSTISLSTSCM KSATPRRSYALVQRPSSLGA RNVSRAFGLKSSSFRVSAMASYKVKLI
Sbjct: 1   MSTISLSTSCMVKSATPRRSYALVQRPSSLGAFRNVSRAFGLKSSSFRVSAMASYKVKLI 60

Query: 64  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 123
           GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN
Sbjct: 61  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 120

Query: 124 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           QMEKGYLLTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 149

[Close]

BLAST of MS009140 vs. ExPASy TrEMBL
Match: A0A6J1K096 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 133/150 (88.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMA-SYKVKL 63
           MS I+L TSC+ KSATPRRS ALVQRPSSLG+ R+VSRAFGLKSSSF+V+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLGSFRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 64  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDD 123
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 124 NQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           NQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of MS009140 vs. ExPASy TrEMBL
Match: A0A6J1JQ79 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.3e-68
Identity = 129/149 (86.58%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLI 63
           MST+ L TSC+ ++ATPR+S ALVQRPSSLG+ RNVSRAFGLKSSSF+VSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 64  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 123
           GPNGEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQ+DGSFLDD 
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120

Query: 124 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           QMEKGY+LTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of MS009140 vs. ExPASy TrEMBL
Match: A0A6J1FEX9 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68
Identity = 133/150 (88.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMA-SYKVKL 63
           MS I+L TSC+ KSATPRRS ALVQRPSSL +VR+VSRAFGLKSSSF+V+AMA +YKVKL
Sbjct: 1   MSAINLPTSCLIKSATPRRSCALVQRPSSLRSVRSVSRAFGLKSSSFKVTAMATTYKVKL 60

Query: 64  IGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDD 123
           IGPNGEENEFEAPDDAYILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQSDGSFLDD
Sbjct: 61  IGPNGEENEFEAPDDAYILDSAEDAGLDLPYSCRAGACSTCAGQVVSGTVDQSDGSFLDD 120

Query: 124 NQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           NQMEKGY+LTCVAYPQSDCVIHTHKEGDLY
Sbjct: 121 NQMEKGYVLTCVAYPQSDCVIHTHKEGDLY 150

[Close]

BLAST of MS009140 vs. ExPASy TrEMBL
Match: A0A6J1E8R7 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.3e-67
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSFRVSAMASYKVKLI 63
           MST+ L TSC+ ++ATPR+S ALVQRPSSL + R+VSRAFGLKSSSF+VSAMASYKVKLI
Sbjct: 1   MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60

Query: 64  GPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFLDDN 123
           GPNGEENEFEAPDD YILDSAE+AGLDLPYSCRAGACSTCAGQ+VSG VDQ+DGSFLDD 
Sbjct: 61  GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120

Query: 124 QMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           QMEKGY+LTCVAYPQSDCVIHTHKEGDL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149

[Close]

BLAST of MS009140 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-47
Identity = 94/154 (61.04%), Postives = 118/154 (76.62%), Query Frame = 0


Query: 1   TLNMSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSS--SFRVSAMASY 60
           T+ +S+ S+ T  + +S T  +         S+G+ + VSR+FGLK S  S   +  A Y
Sbjct: 3   TVRISSTSM-TKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVY 62

Query: 61  KVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGS 120
           KVKL+GP+G+E+EFE  DD YILD+AE AG+DLPYSCRAGACSTCAGQIVSG VDQSDGS
Sbjct: 63  KVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGS 122

Query: 121 FLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDLY 153
           FL+D+ +EKGY+LTCVAYPQSDCVIHTHKE +L+
Sbjct: 123 FLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of MS009140 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 154.1 bits (388), Expect = 9.2e-38
Identity = 85/150 (56.67%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAV--RNVSRAFGLKSSSF---RVSAMASY 63
           M++ +LS++ +  S   R+     Q P SL ++   N    FGLKSS+    RV+AMA+Y
Sbjct: 1   MASTALSSAIVSTSFLRRQ-----QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATY 60

Query: 64  KVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGS 123
           KVK I P GE+ E E  +D Y+LD+AE AGLDLPYSCRAG+CS+CAG++VSG +DQSD S
Sbjct: 61  KVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQS 120

Query: 124 FLDDNQMEKGYLLTCVAYPQSDCVIHTHKE 149
           FLDD QM +GY+LTCVAYP SD VI THKE
Sbjct: 121 FLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of MS009140 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-35
Identity = 83/151 (54.97%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 4   MSTISLSTSCMFKSATPRRSYALVQRPSSLGAVRNVSRAFGLKSSSF---RVSAMASYKV 63
           M++ +LS S +  ++  RRS A +   S   A  N    FGLKS +    RV+AMA+YKV
Sbjct: 1   MASTALS-SAIVGTSFIRRSPAPISLRSLPSA--NTQSLFGLKSGTARGGRVTAMATYKV 60

Query: 64  KLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSDGSFL 123
           K I P G E E E  DD Y+LD+AE AG+DLPYSCRAG+CS+CAG++VSG VDQSD SFL
Sbjct: 61  KFITPEG-ELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFL 120

Query: 124 DDNQMEKGYLLTCVAYPQSDCVIHTHKEGDL 152
           DD Q+ +G++LTC AYP SD  I THKE D+
Sbjct: 121 DDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147

[Close]

BLAST of MS009140 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-34
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 38  NVSRAFGLKSSS---FRVSAMASYKVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYS 97
           N +  FGL SS     +V A  S KVKLI P GEE E E  +D  IL+SAENAGL+LPYS
Sbjct: 31  NNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYS 90

Query: 98  CRAGACSTCAGQIVSGEVDQSDGSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDL 152
           CR+G C TC G++VSG+VDQS GSFL++ Q++KGY+LTC+A P  DCV++THK+ DL
Sbjct: 91  CRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of MS009140 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-17
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 57  SYKVKLIGPNGEENEFEAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQIVSGEVDQSD 116
           +YKV ++  +G+  E E   D  IL  A ++GLD+PY C  G C TC  ++V+G VDQS 
Sbjct: 52  AYKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS- 111

Query: 117 GSFLDDNQMEKGYLLTCVAYPQSDCVIHTHKEGDL 152
           G  L D+ +E+GY L C +YP SDC I    E +L
Sbjct: 112 GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEEL 144

The following BLAST results are available for this feature:

BLAST of MS009140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134447.1	4.7e-76	98.66	ferredoxin, root R-B2-like [Momordica charantia]	[more]
XP_023551682.1	5.0e-70	89.93	ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6578819.1	7.2e-69	88.74	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7016344.1	9.5e-69	89.33	Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022992802.1	3.6e-68	88.67	ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022992803.1 ferredoxin, root R...	[more]

BLAST of MS009140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	1.7e-49	65.79	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	5.3e-46	61.04	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P14937	3.0e-41	78.35	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P94044	5.1e-41	63.71	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]
P14936	1.1e-40	77.32	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]

BLAST of MS009140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZM5	2.3e-76	98.66	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111006691 PE=3 SV=1	[more]
A0A6J1K096	1.7e-68	88.67	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111489026 PE=3 SV=1	[more]
A0A6J1JQ79	2.3e-68	86.58	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111487329 PE=3 SV=1	[more]
A0A6J1FEX9	3.9e-68	88.67	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111444864 PE=3 SV=1	[more]
A0A6J1E8R7	4.3e-67	85.23	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111430444 PE=3 SV=1	[more]

BLAST of MS009140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	3.7e-47	61.04	ferredoxin 3	[more]
AT1G10960.1	9.2e-38	56.67	ferredoxin 1	[more]
AT1G60950.1	1.5e-35	54.97	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	1.2e-34	58.97	ferredoxin 4	[more]
AT4G14890.1	6.9e-17	44.21	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 56..152 e-value: 6.2E-50 score: 165.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 65..138 e-value: 1.3E-20 score: 73.1
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 58..149 score: 12.865599
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 63..144 e-value: 1.81872E-33 score: 111.333
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 55..152 e-value: 6.7E-36 score: 124.0
None	No IPR available	PANTHER	PTHR43112:SF31	FERREDOXIN	coord: 4..152
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 4..152
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 95..103
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 42..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009140.1	MS009140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding