MS004892 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAAVGAQKVKSGTSVGIKWVKNQYQKKVSK Homology
BLAST of MS004892 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa]) HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31 Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of MS004892 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 144.4 bits (363), Expect = 4.5e-31 Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of MS004892 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30 Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of MS004892 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30 Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0
BLAST of MS004892 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 137.9 bits (346), Expect = 4.2e-29 Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0
BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25 Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of MS004892 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21 Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 0
BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A2G5E5C3 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 7.7e-21 Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 0
BLAST of MS004892 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06 Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 0
BLAST of MS004892 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein ) HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04 Identity = 31/84 (36.90%), Postives = 37/84 (44.05%), Query Frame = 0
BLAST of MS004892 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04 Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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