MS003561 (gene) Bitter gourd (TR) v1

Overview


Name	MS003561
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AIR carboxylase
Location	scaffold234: 3574010 .. 3575609 (+)
RNA-Seq Expression	MS003561
Synteny	MS003561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCTGATTCGGATTTTCCTGTAATGAGAGATGCTGCAAAGGTCCTTGACACGTTTGGTGTATCTTATGAGGTTAGTTTTTTATTTTTCATGATTGACATACATATATAATATATTTCTGACCTGCTACTTTTTTTCAAAAAATACGCAGATAAAGATAGTTTCTGCTCATCGGACCCCTGATTGGATGTTCTCTTACGCGTCATCTGCCCAGGAGAGAGGGATCCAGATTATCATTGCTGGTGCTGGGGGTGCAGCCCATTTACCAGGCTAGTCATTTAAAGGCTTCCTTTATAGTATATTGTATTTGGATAGAACAAACGATCAGATTACATTAATTCCAAAGGGCTGGTGAAGTGGATAAAATTTGCTTGATTAAGTGATCCTGGGTTCAAAAGTACTTGGGTAACTGGTTATTGCATGTTGTAAATTCAGGGGATAGTTGATTGTTCTTCGTGTAAATCTGGTATACAAAGAAATGATGGGGGTTTATGTATTTATTTTCTCAAAAGTAGGAAATTTCTCATTAGCAGCTGGTAGCTGGATTTTCAGGAATGGTTGCCTCTCTATGATGGGGGTTTATGTATTTATTTTCTCAAAAGTAGGAAATTTCTCATTAGCAGCTGGTAGCTGGATTTTCAGGAATGGTTGCCTCTCTATGATGGGGGTTTATGTATTTATTTTCTCAAAAGTAGGAAATTTCTCATTAGCAGCTGGTAGCTGGATTTTCAGGAATGGTTGCCTCTCTTACTCCGTTGCCTGTTATTGGTGTCCCTGTGCGTGCTTCGGCGTTGGATGGACTTGATTCTCTTCTATCAATTGTGCAGGTAATTTCATTTTGGTCTCAAAATAATCTCTGTCGTCTTTGGTTTCTTTAACAATTTTTAATGACAGATAATCACAAACTTTGGTGCATTTTTGAAGATCAATTGATGTAATTTGTGATTGAACATTTCTTCATTTTGTCCTTTTTCTTAAGGGCAAGCTTTTAAATGAATGTTCTGGTATAAGAGAATATATTGGTTTTGTACAATTGATAAGTTTTAGTTTTGCAAGTAGACGGCAGGTTTATTAACGTAGAACTTGCTTAATGGAAAACGGGATTGTACTCTGATAGGCCCAGGATAGTTTCAACCATACTCTTCCTTCTGGTATAACTTTCTTCCTAAGGACTGCATGACCTTTGGGATGTATTTTGGTGGTAAATGGTAATATTCTATGTAATAACATTATTATCTGCTTTTGGCAATTATTTGTGCCAATTATTCGTTCCCGTTTCACAAGTGTCTTCCCATATGCAGTATTTATGATTGTTTAAGGTCTGGTCTTGCAGATGCCGAGGGGGGTTCCGGTTGCTACTGTTGCAATCAATAACGCAACCAATGCTGGCTTGTTGGCAGTAAGGATGTTGGGAGTGGCAGATGCAGATCTAGTCTCAAGGTGCTGCTCCTATCATATATNGTACAGAAAGTCTTATGATATATGTTTGCAGTTGGTGACAACACCGTTAATGTGCAGGATGAGCCAGTTTCAAGAAGACACGAAGAAAAATGTGTTGAGTAAGGCAGAAAAGTTGGAGAAAGATGGTTGGGATCTG

mRNA sequence

ATGGGCTCTGATTCGGATTTTCCTGTAATGAGAGATGCTGCAAAGGTCCTTGACACGTTTGGTGTATCTTATGAGATAAAGATAGTTTCTGCTCATCGGACCCCTGATTGGATGTTCTCTTACGCGTCATCTGCCCAGGAGAGAGGGATCCAGATTATCATTGCTGGTGCTGGGGGAATGGTTGCCTCTCTTACTCCGTTGCCTGTTATTGGTGTCCCTGTGCGTGCTTCGGCGTTGGATGGACTTGATTCTCTTCTATCAATTGTGCAGATGCCGAGGGGGGTTCCGGTTGCTACTGTTGCAATCAATAACGCAACCAATGCTGGCTTGTTGGCAGTAAGGATGTTGGGAGTGGCAGATGCAGATCTAGTCTCAAGGTGCTGCTCCTATCATATATNGTACAGAAAGTCTTATGATATATGTTTGCAGTTGGTGACAACACCGTTAATGTGCAGGATGAGCCAGTTTCAAGAAGACACGAAGAAAAATGTGTTGAGTAAGGCAGAAAAGTTGGAGAAAGATGGTTGGGATCTG

Coding sequence (CDS)

ATGGGCTCTGATTCGGATTTTCCTGTAATGAGAGATGCTGCAAAGGTCCTTGACACGTTTGGTGTATCTTATGAGATAAAGATAGTTTCTGCTCATCGGACCCCTGATTGGATGTTCTCTTACGCGTCATCTGCCCAGGAGAGAGGGATCCAGATTATCATTGCTGGTGCTGGGGGAATGGTTGCCTCTCTTACTCCGTTGCCTGTTATTGGTGTCCCTGTGCGTGCTTCGGCGTTGGATGGACTTGATTCTCTTCTATCAATTGTGCAGATGCCGAGGGGGGTTCCGGTTGCTACTGTTGCAATCAATAACGCAACCAATGCTGGCTTGTTGGCAGTAAGGATGTTGGGAGTGGCAGATGCAGATCTAGTCTCAAGGTGCTGCTCCTATCATATATNGTACAGAAAGTCTTATGATATATGTTTGCAGTTGGTGACAACACCGTTAATGTGCAGGATGAGCCAGTTTCAAGAAGACACGAAGAAAAATGTGTTGAGTAAGGCAGAAAAGTTGGAGAAAGATGGTTGGGATCTG

Protein sequence

MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKDGWDL

Homology

[Close]

BLAST of MS003561 vs. NCBI nr
Match: XP_022152441.1 (phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X4 [Momordica charantia])

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 343 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 402

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 403 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 462

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 463 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 500

[Close]

BLAST of MS003561 vs. NCBI nr
Match: XP_022152438.1 (phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 484 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 543

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 544 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 603

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 604 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 641

[Close]

BLAST of MS003561 vs. NCBI nr
Match: XP_022152440.1 (phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X3 [Momordica charantia])

HSP 1 Score: 270.8 bits (691), Expect = 8.5e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 429 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 488

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 489 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 548

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 549 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 586

[Close]

BLAST of MS003561 vs. NCBI nr
Match: KAA0037050.1 (phosphoribosylaminoimidazole carboxylase [Cucumis melo var. makuwa] >TYK06601.1 phosphoribosylaminoimidazole carboxylase [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 148/184 (80.43%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGV YEIKIVSAHRTPDWMFSYASSAQERGI++IIAGAG  
Sbjct: 428 MGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPDWMFSYASSAQERGIEVIIAGAGGA 487

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 488 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 547

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADL+S                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 548 MLGVADADLLS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 585

[Close]

BLAST of MS003561 vs. NCBI nr
Match: XP_008441168.1 (PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 148/184 (80.43%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGV YEIKIVSAHRTPDWMFSYASSAQERGI++IIAGAG  
Sbjct: 483 MGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPDWMFSYASSAQERGIEVIIAGAGGA 542

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 543 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 602

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADL+S                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 603 MLGVADADLLS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 640

[Close]

BLAST of MS003561 vs. ExPASy Swiss-Prot
Match: P55195 (Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia OX=3918 GN=PURKE PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-53
Identity = 116/183 (63.39%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSD PVM+ AA++++ FGV +E++IVSAHRTP+ MF YASSA ERG Q+IIAGAG  
Sbjct: 395 MGSDSDLPVMKSAAEMMEMFGVPHEVRIVSAHRTPELMFCYASSAHERGYQVIIAGAGGA 454

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPV+GVPVRAS LDGLDSLLSIVQMPRGVPVATVA+NNATNAGLLAVR
Sbjct: 455 AHLPGMVASLTPLPVVGVPVRASTLDGLDSLLSIVQMPRGVPVATVAVNNATNAGLLAVR 514

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 178
           MLGVA+ +L+S                          RMSQ+QED K+ VL + +KLEK 
Sbjct: 515 MLGVANDNLLS--------------------------RMSQYQEDQKEAVLREGDKLEKH 551

[Close]

BLAST of MS003561 vs. ExPASy Swiss-Prot
Match: Q9WYS7 (N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=purE PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.2e-42
Identity = 96/182 (52.75%), Postives = 123/182 (67.58%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSD PVM+ AA++L+ FG+ YEI IVSAHRTPD MF YA +A+ERGI++IIAGAG  
Sbjct: 8   MGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGA 67

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVAS+T LPVIGVPV+ S L+GLDSL SIVQMP GVPVATVAINNA NAG+LA  
Sbjct: 68  AHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAAS 127

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 177
           +LG+   ++                            ++ +++E  K+ VL KA++LE+ 
Sbjct: 128 ILGIKYPEIAR--------------------------KVKEYKERMKREVLEKAQRLEQI 163

[Close]

BLAST of MS003561 vs. ExPASy Swiss-Prot
Match: O58058 (N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=purE PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.5e-41
Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSD PVM++AA++L+ FGV YEI I+SAHRTP+  + YA  A+ERGI++IIAGAG  
Sbjct: 16  MGSDSDLPVMKEAARILEEFGVPYEITIISAHRTPERAYEYAKKAEERGIEVIIAGAGGA 75

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               G++ASLT LPVIGVP+++ AL+GLDSLLSIVQMP G+PVATVAI+NA NA LLA+R
Sbjct: 76  AHLPGIIASLTVLPVIGVPIKSKALNGLDSLLSIVQMPSGIPVATVAIDNAKNAALLALR 135

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 178
           +LG+   ++                            ++ ++ +D K+ V  KA++LE+ 
Sbjct: 136 ILGIKYPEIKE--------------------------KLRRYMKDMKRKVEEKAKRLEEM 172

[Close]

BLAST of MS003561 vs. ExPASy Swiss-Prot
Match: P15567 (Phosphoribosylaminoimidazole carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ade6 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.8e-41
Identity = 97/182 (53.30%), Postives = 117/182 (64.29%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSD   M+DAA +LD F V YE+ IVSAHRTPD M +YA +A  RG+++IIAGAG  
Sbjct: 392 MGSDSDLSKMKDAAVILDEFKVPYELTIVSAHRTPDRMVTYARTAASRGLRVIIAGAGGA 451

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVA++TPLPVIGVPV+ S LDG+DSL SIVQMPRGVPVATVAINN+ NAG+LA R
Sbjct: 452 AHLPGMVAAMTPLPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVATVAINNSQNAGILACR 511

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 177
           +L                                L+  M  F ++ K+ VL KA+KLEK 
Sbjct: 512 ILATFQPS--------------------------LLAAMESFMDNMKEIVLEKADKLEKV 547

[Close]

BLAST of MS003561 vs. ExPASy Swiss-Prot
Match: O74197 (Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=ADE2 PE=3 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.7e-40
Identity = 98/183 (53.55%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSD PVM  A K+L+ F V +E+ IVSAHRTP  M  YAS A  RGI++IIAGAG  
Sbjct: 408 MGSDSDLPVMSAACKMLEQFEVPFEVTIVSAHRTPYRMNKYASEAVSRGIKVIIAGAGGA 467

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVA++TP+PVIGVPV+ S LDG+DSL SIVQMPRGVPVATVAINN+TNAG+LAVR
Sbjct: 468 AHLPGMVAAMTPVPVIGVPVKGSTLDGVDSLHSIVQMPRGVPVATVAINNSTNAGILAVR 527

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 178
           MLG+ + D V                           +M +F    ++ VL KA KLE  
Sbjct: 528 MLGIHNYDYVK--------------------------KMEEFLNKQEEEVLQKAAKLESI 564

[Close]

BLAST of MS003561 vs. ExPASy TrEMBL
Match: A0A6J1DHR3 (AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.1e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 343 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 402

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 403 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 462

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 463 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 500

[Close]

BLAST of MS003561 vs. ExPASy TrEMBL
Match: A0A6J1DDY0 (AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.1e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 429 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 488

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 489 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 548

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 549 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 586

[Close]

BLAST of MS003561 vs. ExPASy TrEMBL
Match: A0A6J1DEV3 (AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.1e-69
Identity = 152/184 (82.61%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG  
Sbjct: 484 MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAGGA 543

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 544 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 603

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADLVS                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 604 MLGVADADLVS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 641

[Close]

BLAST of MS003561 vs. ExPASy TrEMBL
Match: A0A5D3C3X4 (AIR carboxylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00690 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 148/184 (80.43%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGV YEIKIVSAHRTPDWMFSYASSAQERGI++IIAGAG  
Sbjct: 428 MGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPDWMFSYASSAQERGIEVIIAGAGGA 487

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 488 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 547

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADL+S                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 548 MLGVADADLLS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 585

[Close]

BLAST of MS003561 vs. ExPASy TrEMBL
Match: A0A1S4DTU8 (AIR carboxylase OS=Cucumis melo OX=3656 GN=LOC103485386 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 148/184 (80.43%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSDSDFPVMRDAAKVLDTFGV YEIKIVSAHRTPDWMFSYASSAQERGI++IIAGAG  
Sbjct: 256 MGSDSDFPVMRDAAKVLDTFGVPYEIKIVSAHRTPDWMFSYASSAQERGIEVIIAGAGGA 315

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR
Sbjct: 316 AHLPGMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 375

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 179
           MLGVADADL+S                          RMSQFQEDTKKNVLSKAEKLEKD
Sbjct: 376 MLGVADADLLS--------------------------RMSQFQEDTKKNVLSKAEKLEKD 413

[Close]

BLAST of MS003561 vs. TAIR 10
Match: AT2G37690.1 (phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative )

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-55
Identity = 115/183 (62.84%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSD+D PVM+DAAK+LD FGV++E+KIVSAHRTP+ M++YA+SA  RG+Q+IIAGAG  
Sbjct: 481 MGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQVIIAGAGGA 540

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPVRA+ LDG+DSLLSIVQMPRGVPVATVAINNATNA LLAVR
Sbjct: 541 AHLPGMVASLTPLPVIGVPVRATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAVR 600

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 178
           MLG++D DLVS                          RM Q+QED +   L+K EKLE +
Sbjct: 601 MLGISDTDLVS--------------------------RMRQYQEDMRDENLNKGEKLETE 637

[Close]

BLAST of MS003561 vs. TAIR 10
Match: AT2G05140.1 (phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein )

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-53
Identity = 113/183 (61.75%), Postives = 134/183 (73.22%), Query Frame = 0


Query: 1   MGSDSDFPVMRDAAKVLDTFGVSYEIKIVSAHRTPDWMFSYASSAQERGIQIIIAGAG-- 60
           MGSD+D  VM+DAAK+LD FGV++E+KIVSAHRTP+ M++YA+SA  RG+Q+IIAGAG  
Sbjct: 1   MGSDTDLLVMKDAAKILDMFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQVIIAGAGGA 60

Query: 61  ----GMVASLTPLPVIGVPVRASALDGLDSLLSIVQMPRGVPVATVAINNATNAGLLAVR 120
               GMVASLTPLPVIGVPV+A+ LDG+DSLLSIVQMPRGVPVATVAINNATNA LLAVR
Sbjct: 61  AHLPGMVASLTPLPVIGVPVQATRLDGVDSLLSIVQMPRGVPVATVAINNATNAALLAVR 120

Query: 121 MLGVADADLVSRCCSYHIXYRKSYDICLQLVTTPLMCRMSQFQEDTKKNVLSKAEKLEKD 178
           MLG++D DLVS                          RM Q+QED +   L+K EKLE  
Sbjct: 121 MLGISDNDLVS--------------------------RMRQYQEDMRDENLNKGEKLETQ 157

The following BLAST results are available for this feature:

BLAST of MS003561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152441.1	8.5e-69	82.61	phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X4 [Momordica ch...	[more]
XP_022152438.1	8.5e-69	82.61	phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [Momordica ch...	[more]
XP_022152440.1	8.5e-69	82.61	phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X3 [Momordica ch...	[more]
KAA0037050.1	2.1e-67	80.43	phosphoribosylaminoimidazole carboxylase [Cucumis melo var. makuwa] >TYK06601.1 ...	[more]
XP_008441168.1	2.1e-67	80.43	PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [C...	[more]

BLAST of MS003561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55195	2.3e-53	63.39	Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna acon...	[more]
Q9WYS7	3.2e-42	52.75	N5-carboxyaminoimidazole ribonucleotide mutase OS=Thermotoga maritima (strain AT...	[more]
O58058	3.5e-41	49.73	N5-carboxyaminoimidazole ribonucleotide mutase OS=Pyrococcus horikoshii (strain ...	[more]
P15567	7.8e-41	53.30	Phosphoribosylaminoimidazole carboxylase OS=Schizosaccharomyces pombe (strain 97...	[more]
O74197	1.7e-40	53.55	Phosphoribosylaminoimidazole carboxylase OS=Candida glabrata (strain ATCC 2001 /...	[more]

BLAST of MS003561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHR3	4.1e-69	82.61	AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1	[more]
A0A6J1DDY0	4.1e-69	82.61	AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1	[more]
A0A6J1DEV3	4.1e-69	82.61	AIR carboxylase OS=Momordica charantia OX=3673 GN=LOC111020171 PE=3 SV=1	[more]
A0A5D3C3X4	1.0e-67	80.43	AIR carboxylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G0069...	[more]
A0A1S4DTU8	1.0e-67	80.43	AIR carboxylase OS=Cucumis melo OX=3656 GN=LOC103485386 PE=3 SV=1	[more]

BLAST of MS003561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37690.1	2.6e-55	62.84	phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative	[more]
AT2G05140.1	3.1e-53	61.75	phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000031	PurE domain	SMART	SM01001	AIRC_2	coord: 1..138 e-value: 2.1E-73 score: 259.8
IPR000031	PurE domain	TIGRFAM	TIGR01162	TIGR01162	coord: 1..130 e-value: 1.2E-53 score: 178.8
IPR000031	PurE domain	PFAM	PF00731	AIRC	coord: 1..131 e-value: 1.6E-53 score: 180.3
None	No IPR available	GENE3D	3.40.50.1970		coord: 1..137 e-value: 1.4E-56 score: 192.7
None	No IPR available	PANTHER	PTHR11609:SF13	BNAA03G17360D PROTEIN	coord: 1..131
None	No IPR available	PANTHER	PTHR11609	PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7	coord: 142..176 coord: 1..131
None	No IPR available	PANTHER	PTHR11609:SF13	BNAA03G17360D PROTEIN	coord: 142..176
None	No IPR available	SUPERFAMILY	52255	N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)	coord: 1..131
IPR024694	PurE, prokaryotic type	PIRSF	PIRSF001338	AIR_carboxylase	coord: 138..174 e-value: 7.4 score: 3.8 coord: 1..140 e-value: 5.3E-54 score: 179.9
IPR033747	Class I PurE	HAMAP	MF_01929	PurE_classI	coord: 1..142 score: 24.483768

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003561.1	MS003561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006189	'de novo' IMP biosynthetic process