MS003068 (gene) Bitter gourd (TR) v1

Overview
NameMS003068
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold234: 241900 .. 242190 (-)
RNA-Seq ExpressionMS003068
SyntenyMS003068
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATTGTTGTCGTGGTCGTTGGCATTGAAGCTCTTCTTCTTGCACCACGTGCACTTCCCTCGGACTTTCTTGTCAAGGTTAAAGTACACAACCTTGTTGTCGTCGTCTCTGACTTTGTAATGTTTCTTGAGCTCCATACAATTTGGGTGGAGGTTCAAGTTTTGATTTTGGCAGTGGTACACAAAGCCGTTGATGGGCATTGTGCAAGCCTCGCAAGTCCTTCTATGGGAATTTGGTGGGGTATTGAAGAATTCGAAGGTCGAATTGGGGAAGAATTCGTGGGAAGTTTT

mRNA sequence

CCCATTGTTGTCGTGGTCGTTGGCATTGAAGCTCTTCTTCTTGCACCACGTGCACTTCCCTCGGACTTTCTTGTCAAGGTTAAAGTACACAACCTTGTTGTCGTCGTCTCTGACTTTGTAATGTTTCTTGAGCTCCATACAATTTGGGTGGAGGTTCAAGTTTTGATTTTGGCAGTGGTACACAAAGCCGTTGATGGGCATTGTGCAAGCCTCGCAAGTCCTTCTATGGGAATTTGGTGGGGTATTGAAGAATTCGAAGGTCGAATTGGGGAAGAATTCGTGGGAAGTTTT

Coding sequence (CDS)

CCCATTGTTGTCGTGGTCGTTGGCATTGAAGCTCTTCTTCTTGCACCACGTGCACTTCCCTCGGACTTTCTTGTCAAGGTTAAAGTACACAACCTTGTTGTCGTCGTCTCTGACTTTGTAATGTTTCTTGAGCTCCATACAATTTGGGTGGAGGTTCAAGTTTTGATTTTGGCAGTGGTACACAAAGCCGTTGATGGGCATTGTGCAAGCCTCGCAAGTCCTTCTATGGGAATTTGGTGGGGTATTGAAGAATTCGAAGGTCGAATTGGGGAAGAATTCGTGGGAAGTTTT

Protein sequence

PIVVVVVGIEALLLAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQVLILAVVHKAVDGHCASLASPSMGIWWGIEEFEGRIGEEFVGSF
Homology
BLAST of MS003068 vs. NCBI nr
Match: XP_023550075.1 (uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 14  LAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQVLILAVVHKAVDGHCASLAS 73
           LAP ALP   LV++++H     V + V   E+   WVEVQV+ LAV H+A+DG  AS+A 
Sbjct: 26  LAPHALPFHLLVEIELH-----VFNLVTIFEVSAAWVEVQVIFLAVEHEAIDGFSASVA- 85

Query: 74  PSMGI----WWGIEEFEGRIGEEFVG 96
           P  G+    WW  EE +G   +EF+G
Sbjct: 86  PYYGLVAAFWWVSEELKGGARKEFMG 105

BLAST of MS003068 vs. NCBI nr
Match: XP_023550074.1 (uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 14  LAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQVLILAVVHKAVDGHCASLAS 73
           LAP ALP   LV++++H     V + V   E+   WVEVQV+ LAV H+A+DG  AS+A 
Sbjct: 26  LAPHALPFHLLVEIELH-----VFNLVTIFEVSAAWVEVQVIFLAVEHEAIDGFSASVA- 85

Query: 74  PSMGI----WWGIEEFEGRIGEEFVG 96
           P  G+    WW  EE +G   +EF+G
Sbjct: 86  PYYGLVAAFWWVSEELKGGARKEFMG 105

BLAST of MS003068 vs. NCBI nr
Match: KAG6578700.1 (hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 1   PIVVVVVG---IEALLLAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQVLIL 60
           PIV V V     EA +LAP ALP    V++++H     V + V F E+   WV+VQ   L
Sbjct: 14  PIVSVSVSAAVFEAPILAPYALPFHLHVEIELH-----VFNLVTFFEVSAAWVKVQFRFL 73

Query: 61  AVVHKAVDGHCASLA---SPSMGIWWGIEEFEGRIGEEFVG 96
           AV H+A+DG  AS+A   +     WW  EE +G   +EF+G
Sbjct: 74  AVEHEAIDGFSASVAPHYALVAAFWWVSEELKGGTRKEFMG 109

BLAST of MS003068 vs. ExPASy TrEMBL
Match: A0A0A0KNV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 1   PIVVVVVGIEALLLAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQVLILAVV 60
           P + + +  +  LLAP ALP DFLV+++ H     V + V+ +E+ T  VE+QV+ LAVV
Sbjct: 13  PTIALAMAFDGPLLAPHALPLDFLVEIEHH-----VFNLVIPVEVSTAGVEIQVIFLAVV 72

Query: 61  HKAVDGHCASLASP----SMGIWWGIEEFEGRIGEEFV 95
           HKA+D  CA +A+P      G WWG  E EG   E+F+
Sbjct: 73  HKAIDRFCAGVANPFAFVVAGPWWGFRELEGGTCEKFM 105

BLAST of MS003068 vs. ExPASy TrEMBL
Match: A0A0A0KU92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 1   PIVVVVVGIEALLLAPRALPSDFLVKVKVHNLVVVVSDFVMFLELHTIWVEVQV--LILA 60
           P + + +GI+  LLAP ALP DFLV++++H     V +FV+ +++ T  VE+Q+    LA
Sbjct: 13  PTIGLAMGIDGPLLAPHALPLDFLVEIELH-----VFNFVIPVQVSTARVEIQLDFDFLA 72

Query: 61  VVHKAVDGHCASLAS----PSMGIWWGIEEFEGRIGEEFV 95
           VVHKA+D  CA +A      + G WWG +E EG + EEF+
Sbjct: 73  VVHKAIDRLCAGVAKLFAVVAAGPWWGFKELEGGLWEEFM 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023550075.11.5e-0644.19uncharacterized protein LOC111808373 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023550074.11.5e-0644.19uncharacterized protein LOC111808373 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG6578700.18.0e-0540.59hypothetical protein SDJN03_23148, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KNV71.2e-0942.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517075 PE=4 SV=1[more]
A0A0A0KU921.3e-0843.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G516570 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003068.1MS003068.1mRNA