MS028546 (gene) Bitter gourd (TR) v1

Overview


Name	MS028546
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c oxidase subunit 2
Location	scaffold29: 329738 .. 330037 (+)
RNA-Seq Expression	MS028546
Synteny	MS028546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

mRNA sequence

ATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

Coding sequence (CDS)

ATGAGAGTTCCGTGCTGCTCGCCACTCCCCGAGGCCAAGGACGGGGTCGAACCGTCATTCCAGGATTTGCAGTCCGATACATTTCCATTATGTTACCTAGCCAAACCCGCCACCTCATGTGCCAAAGTCAAACGGTTGTTCTTCCTTCCCCGCTCCCTCTTTTTCTACATATGCGGTGGCGGGCGGAGCACTCGTCATGACCGGCGGCGGGTTACCATAGAAGAGGGGACAACTTCTTTCTCCCTTGCCTTGCTCCATTTTCCTTTGATGATTGAAAGTAGCAAGCCACTCCACTACTAG

Protein sequence

MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGGGRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY

Homology

[Close]

BLAST of MS028546 vs. NCBI nr
Match: YP_009526540.1 (hypothetical protein [Ammopiptanthus mongolicus] >AXV54299.1 hypothetical protein [Ammopiptanthus mongolicus])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           M VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 364 MEVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 423

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEG TSFSLALLHFP +IESSKPLHY
Sbjct: 424 GRSTLYDRRRVTREEGITSFSLALLHFPFLIESSKPLHY 462

[Close]

BLAST of MS028546 vs. NCBI nr
Match: AGC78983.1 (hypothetical protein [Vicia faba])

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           M+VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 1   MKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 60

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRSTR+DRRRVT EEGTT  SLALLHFP +I SSKPLHY
Sbjct: 61  GRSTRYDRRRVTREEGTTYLSLALLHFPFLILSSKPLHY 99

[Close]

BLAST of MS028546 vs. NCBI nr
Match: YP_007516862.1 (hypothetical protein GlmaxMp13 [Glycine max] >AFR34339.1 hypothetical protein GlmaxMp13 [Glycine max])

HSP 1 Score: 183.7 bits (465), Expect = 7.6e-43
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           ++VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYIC  
Sbjct: 162 IKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYIC-- 221

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEGTTSFSLALLHFP +IES KPLHY
Sbjct: 222 GRSTLYDRRRVTREEGTTSFSLALLHFPFLIESRKPLHY 258

[Close]

BLAST of MS028546 vs. NCBI nr
Match: RDY13467.1 (hypothetical protein CR513_01586, partial [Mucuna pruriens])

HSP 1 Score: 179.1 bits (453), Expect = 1.9e-41
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 3   VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGGGR 62
           VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYIC  GR
Sbjct: 138 VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYIC--GR 197

Query: 63  STRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           ST +DRRRVT EEGTTSFSLALLHF  +IES KPLHY
Sbjct: 198 STLYDRRRVTREEGTTSFSLALLHFTFLIESRKPLHY 232

[Close]

BLAST of MS028546 vs. NCBI nr
Match: QCD83512.1 (hypothetical protein DEO72_LG2g3857 [Vigna unguiculata])

HSP 1 Score: 164.1 bits (414), Expect = 6.2e-37
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           ++V C SPLP+AKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSL FYIC  
Sbjct: 66  IKVLCYSPLPKAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLLFYIC-- 125

Query: 61  GRSTRHDRRRVTIEEGTTSFSL-ALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEGTTSFSL ALLHF  +IES KPLHY
Sbjct: 126 GRSTLYDRRRVTREEGTTSFSLAALLHFTFLIESRKPLHY 163

[Close]

BLAST of MS028546 vs. ExPASy TrEMBL
Match: A0A385G272 (Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp14 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           M VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 364 MEVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 423

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEG TSFSLALLHFP +IESSKPLHY
Sbjct: 424 GRSTLYDRRRVTREEGITSFSLALLHFPFLIESSKPLHY 462

[Close]

BLAST of MS028546 vs. ExPASy TrEMBL
Match: R4IV49 (Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           M+VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYICGG
Sbjct: 1   MKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYICGG 60

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRSTR+DRRRVT EEGTT  SLALLHFP +I SSKPLHY
Sbjct: 61  GRSTRYDRRRVTREEGTTYLSLALLHFPFLILSSKPLHY 99

[Close]

BLAST of MS028546 vs. ExPASy TrEMBL
Match: M1FIW5 (Uncharacterized protein OS=Glycine max OX=3847 GN=orf287 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.7e-43
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           ++VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYIC  
Sbjct: 162 IKVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYIC-- 221

Query: 61  GRSTRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEGTTSFSLALLHFP +IES KPLHY
Sbjct: 222 GRSTLYDRRRVTREEGTTSFSLALLHFPFLIESRKPLHY 258

[Close]

BLAST of MS028546 vs. ExPASy TrEMBL
Match: A0A371IEK0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_01586 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.1e-42
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 3   VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGGGR 62
           VPCCSPLPEAKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSLFFYIC  GR
Sbjct: 138 VPCCSPLPEAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLFFYIC--GR 197

Query: 63  STRHDRRRVTIEEGTTSFSLALLHFPLMIESSKPLHY 100
           ST +DRRRVT EEGTTSFSLALLHF  +IES KPLHY
Sbjct: 198 STLYDRRRVTREEGTTSFSLALLHFTFLIESRKPLHY 232

[Close]

BLAST of MS028546 vs. ExPASy TrEMBL
Match: A0A4D6L4Q6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g3857 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-37
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MRVPCCSPLPEAKDGVEPSFQDLQSDTFPLCYLAKPATSCAKVKRLFFLPRSLFFYICGG 60
           ++V C SPLP+AKDGVEPSFQDLQSDTFPLCY AKPATSCAKVKRLFFLPRSL FYIC  
Sbjct: 66  IKVLCYSPLPKAKDGVEPSFQDLQSDTFPLCYPAKPATSCAKVKRLFFLPRSLLFYIC-- 125

Query: 61  GRSTRHDRRRVTIEEGTTSFSL-ALLHFPLMIESSKPLHY 100
           GRST +DRRRVT EEGTTSFSL ALLHF  +IES KPLHY
Sbjct: 126 GRSTLYDRRRVTREEGTTSFSLAALLHFTFLIESRKPLHY 163

The following BLAST results are available for this feature:

BLAST of MS028546 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009526540.1	7.3e-46	91.92	hypothetical protein [Ammopiptanthus mongolicus] >AXV54299.1 hypothetical protei...	[more]
AGC78983.1	2.8e-45	90.91	hypothetical protein [Vicia faba]	[more]
YP_007516862.1	7.6e-43	88.89	hypothetical protein GlmaxMp13 [Glycine max] >AFR34339.1 hypothetical protein Gl...	[more]
RDY13467.1	1.9e-41	89.69	hypothetical protein CR513_01586, partial [Mucuna pruriens]	[more]
QCD83512.1	6.2e-37	83.00	hypothetical protein DEO72_LG2g3857 [Vigna unguiculata]	[more]

BLAST of MS028546 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A385G272	3.6e-46	91.92	Uncharacterized protein OS=Ammopiptanthus mongolicus OX=126911 GN=amoMp14 PE=4 S...	[more]
R4IV49	1.3e-45	90.91	Uncharacterized protein OS=Vicia faba OX=3906 PE=4 SV=1	[more]
M1FIW5	3.7e-43	88.89	Uncharacterized protein OS=Glycine max OX=3847 GN=orf287 PE=4 SV=1	[more]
A0A371IEK0	9.1e-42	89.69	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_01586 P...	[more]
A0A4D6L4Q6	3.0e-37	83.00	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g3857 PE=4 SV=1	[more]

BLAST of MS028546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS028546.1	MS028546.1	mRNA