MS028526 (gene) Bitter gourd (TR) v1

Overview
NameMS028526
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC116190081
Locationscaffold29: 215286 .. 216697 (+)
RNA-Seq ExpressionMS028526
SyntenyMS028526
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATCAGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTGCTCTCCTCTGGGGGGGAGTTTTTATATCTCGAGAGGTGAGTCGAGGGTAGCCCCCCGCTTGGCCGATTTCTCGGAATCAGAGGAAGATCTCTCATCTGATGACCCTGAACAAGAAGGAGCAGCTCTCGATGTGAGATCAGCAGGAAAAGAAAGAAGAGGAATTGGATGCCCCAGAGCAGCAGCCCCCGGCCTTAAAAAAAAACACACACCTCTTTTTAACTAAAGCCGGACACAAACAAAAGAAACAAGAAAAGGGCCATGATGATGATCCTATGTTCGTTTTCGCCCTGCCCCGATGATGTGCTCCTAGCTCGCGGAGCTACATACCAAAAAAAGAAAAAGAATCTCTCTATTACTTTGAGAAGAGAATCGTTGGTTTGACCGACGGACTACGTGGGAAATACGAGATCTAGGCGAGCCGCTACATGTTTTCCCCTTGCCCTTGAACGAACGATAGAAGAACTACTGAGATTCTCTTAGATAGCGGTCGCATCTATGGTCAATCAATAGGTCCGCGGATCTCTTCTTCTATACGATAAATCGCCATCTCGTAGCACCACCACGACACCGATTCTCGTTATTTTTCCGAGCCCCCCATGCCGGCCGTGACTTCGACTTTGAGTATGATGAATGAGTGGAAAGATCTTTATAGAAGTCCCTGTCCGATCCAACCAAAGAGTTAGTATCTAAAAAATAATATATATATATAGGGGTAGAACTGCGAGTTTTTTCAGAAAAGACTTGCTGCCCCCCTATCCGAATCCCGCGAGTGACTAAGCGCGAGACGAGCCATAACATAAGGGGCGAATCGACTACAACTCATCTATAAAGAATCGACCAACGATATCTTCTTTTTTCGGTATATTTGCATCAGGCTTAGCCCGTACGTACTAGTAAGAAGGTGTTCCCGAAAGGGGACGAAAACTGTCTAAGATCCTGTGTGCCGGCTTAGTAGCGCGTAAACAGAACACGTAGCCTAAGCGGAACTCAATATTCAACCAACCTATGATCCATTTATTGTTTCAACTTACTATCAATCAACCATGTCTTAGGTTCTCGTTGCGGGAGATCTTGGAACGTGCCCGTCGTGTGAATGCGCATACAAATAGGGTCACTATTCGCCTACTACTAAGTTAAGTAAAGGCGGAGAGTGGATTCTAGATTATATCAGTCGGGTAGGCTGGACTGGGGTTCTGGAAAAATCTCTACGAATTCTTCTTTGCAAGAGACATCCCTGGGTGGTTTAGTGATGTCTCCGGCAGCCTTGCTGGGATCTCCAGATCGAATAATTTGTTTACAAGACGCTCTTAGGGGTCTTGTTTTCTCGGATTCCAGCTTTTTACTTTTCTAA

mRNA sequence

ATGGTGGATCAGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTGCTCTCCTCTGGGGGGGAGTTTTTATATCTCGAGAGTCGGGTAGGCTGGACTGGGGTTCTGGAAAAATCTCTACGAATTCTTCTTTGCAAGAGACATCCCTGGGTGGTTTAGTGATGTCTCCGGCAGCCTTGCTGGGATCTCCAGATCGAATAATTTGTTTACAAGACGCTCTTAGGGGTCTTGTTTTCTCGGATTCCAGCTTTTTACTTTTCTAA

Coding sequence (CDS)

ATGGTGGATCAGGACGAGAATGAATTCGGGAATCCAGGACATACTCATCCTGGAGCTTCTGCTCTCCTCTGGGGGGGAGTTTTTATATCTCGAGAGTCGGGTAGGCTGGACTGGGGTTCTGGAAAAATCTCTACGAATTCTTCTTTGCAAGAGACATCCCTGGGTGGTTTAGTGATGTCTCCGGCAGCCTTGCTGGGATCTCCAGATCGAATAATTTGTTTACAAGACGCTCTTAGGGGTCTTGTTTTCTCGGATTCCAGCTTTTTACTTTTCTAA

Protein sequence

MVDQDENEFGNPGHTHPGASALLWGGVFISRESGRLDWGSGKISTNSSLQETSLGGLVMSPAALLGSPDRIICLQDALRGLVFSDSSFLLF
Homology
[Close]
BLAST of MS028526 vs. NCBI nr
Match: PPD98636.1 (hypothetical protein GOBAR_DD04340 [Gossypium barbadense])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 32 ESGRLDWGSGKISTNSSLQETSLGGLVMSPAALLGSPDRIICLQDALRGLVFSDS 87
          +SGRLDWGSGKISTNSSLQETSL GLVMSPAALLGSPDRII LQDALRGL+ S S
Sbjct: 40 QSGRLDWGSGKISTNSSLQETSL-GLVMSPAALLGSPDRIIGLQDALRGLLHSYS 93

[Close]
BLAST of MS028526 vs. NCBI nr
Match: KAG8363195.1 (hypothetical protein BUALT_BualtMtG0008100 [Buddleja alternifolia])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 33   SGRLDWGSGKISTNSSLQETSLGGLVMSPAALLGSPDRIICLQDALRG 81
            S RLDWGSGKISTNSSLQET L GLVMSPAALLGSPDRII LQ+ALRG
Sbjct: 1331 SVRLDWGSGKISTNSSLQETPL-GLVMSPAALLGSPDRIIGLQEALRG 1377

[Close]
BLAST of MS028526 vs. NCBI nr
Match: KAB5511322.1 (hypothetical protein DKX38_030117 [Salix brachista])

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVDQDENEFGNPGHTHPGASALLWGGVFISRESGR 36
          MVDQDENE GNPGHTHPGASALLWGGVFI RE  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGGVFIDREVSR 35

[Close]
BLAST of MS028526 vs. NCBI nr
Match: KAF9660730.1 (hypothetical protein SADUNF_SadunfMtG0003000 [Salix dunnii])

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVDQDENEFGNPGHTHPGASALLWGGVFISRESGR 36
          MVDQDENE GNPGHTHPGASALLWGGVFI RE  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGGVFIDREVSR 35

[Close]
BLAST of MS028526 vs. NCBI nr
Match: XP_021685654.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC110668632 [Hevea brasiliensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1   MVDQDENEFGNPGHTHPGASALLWGGVFISRESGR 36
           MVDQDENE GNPGHTHPGASALLWGG+FI RE  R
Sbjct: 192 MVDQDENESGNPGHTHPGASALLWGGIFIDREVSR 226

[Close]
BLAST of MS028526 vs. ExPASy TrEMBL
Match: A0A5N5IX32 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVDQDENEFGNPGHTHPGASALLWGGVFISRESGR 36
          MVDQDENE GNPGHTHPGASALLWGGVFI RE  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGGVFIDREVSR 35

[Close]
BLAST of MS028526 vs. ExPASy TrEMBL
Match: A0A6N2KAR6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.2e-09
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 1  MVDQDENEFGNPGHTHPGASALLWGGVFISRESGR 36
          MVDQDENE GNPGHTHPGASALLWGGVFI RE  R
Sbjct: 1  MVDQDENESGNPGHTHPGASALLWGGVFIDREVSR 35

[Close]
BLAST of MS028526 vs. ExPASy TrEMBL
Match: A0A5N6L7A8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MVDQDENEFGNPGHTHPGASALLWGGVFISRESGRL 37
           MVDQDENE GNPGHTHPGA ALLWGG FI R   R+
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGGFIERGKSRV 242

[Close]
BLAST of MS028526 vs. ExPASy TrEMBL
Match: A0A5N6L780 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MVDQDENEFGNPGHTHPGASALLWGGVFISRESGRL 37
           MVDQDENE GNPGHTHPGA ALLWGG FI R   R+
Sbjct: 154 MVDQDENESGNPGHTHPGAYALLWGGGFIERGKSRV 189

[Close]
BLAST of MS028526 vs. ExPASy TrEMBL
Match: A0A5N6LCQ5 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1   MVDQDENEFGNPGHTHPGASALLWGGVFISRESGRL 37
           MVDQDENE GNPGHTHPGA ALLWGG FI R   R+
Sbjct: 207 MVDQDENESGNPGHTHPGAYALLWGGGFIERGKSRV 242

The following BLAST results are available for this feature:
BLAST of MS028526 vs. NCBI nr
Match NameE-valueIdentityDescription
PPD98636.11.4e-1489.09hypothetical protein GOBAR_DD04340 [Gossypium barbadense][more]
KAG8363195.13.2e-1189.58hypothetical protein BUALT_BualtMtG0008100 [Buddleja alternifolia][more]
KAB5511322.18.6e-0988.57hypothetical protein DKX38_030117 [Salix brachista][more]
KAF9660730.18.6e-0988.57hypothetical protein SADUNF_SadunfMtG0003000 [Salix dunnii][more]
XP_021685654.11.1e-0885.71LOW QUALITY PROTEIN: uncharacterized protein LOC110668632 [Hevea brasiliensis][more]
BLAST of MS028526 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS028526 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N5IX324.2e-0988.57Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_030117 PE=4 SV=1[more]
A0A6N2KAR64.2e-0988.57Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS60884 PE=4 SV=1[more]
A0A5N6L7A83.9e-0777.78Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46072 PE=4 SV=1[more]
A0A5N6L7803.9e-0777.78Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_46116 PE=4 SV=1[more]
A0A5N6LCQ53.9e-0777.78Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44274 PE=4 SV=1[more]
BLAST of MS028526 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS028526.1MS028526.1mRNA