MC03g_new0091 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g_new0091
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC03: 4263176 .. 4263733 (-)
RNA-Seq Expression	MC03g_new0091
Synteny	MC03g_new0091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGGAATTCGACCCACCATCTAGTGATGATTTCGTCGACGAGGGACATGCAAGCGAGCAAGTGCTGCCTGCAATGGAAGGTCGTGAAGTGCAGCATGATGTCACCCATGTTGATCCTGATGTCCCGACCATGGATGCAAATGTACAAGGTAAGGTGAAGACCAAGAGTGGCAAGAAGCATCAGTGCAAATGCAAGTCAGGCTTGAGGATCCTGACTGAGCAGGTGGCTGCTATAGATACGTGGCTTGCCAGTGTGGAACAGGTAGTCACTTCTATAGACGATCACGTCGTTGGCGTGGAAGGTGATTTGAAAAGTATTCGGAAGTTCTTGCGTCATCTAGTTAAGGTGCGTACTCTATTAATGCTTTCTATATCTCAATTAATTTACTTAATGAATAAATTCATATAGGGTCTACCAGTTGATACTTCCGTTCTTCGAAGAAACATTGGTGGAGATGGAGATGACACTGGTGACGGAGATTCTGCAGGACTAGGAGGTGGTAGTAAGAGTCCGACAAATGACAAGGACAAACAGCGCGCCGGTGAAAATTAG

mRNA sequence

ATGGAAAAGGAATTCGACCCACCATCTAGTGATGATTTCGTCGACGAGGGACATGCAAGCGAGCAAGTGCTGCCTGCAATGGAAGGTCGTGAAGTGCAGCATGATGTCACCCATGTTGATCCTGATGTCCCGACCATGGATGCAAATGTACAAGGTAAGGTGAAGACCAAGAGTGGCAAGAAGCATCAGTGCAAATGCAAGTCAGGCTTGAGGATCCTGACTGAGCAGGTGGCTGCTATAGATACGTGGCTTGCCAGTGTGGAACAGGTAGTCACTTCTATAGACGATCACGTCGTTGGCGTGGAAGGTGATTTGAAAAGTATTCGGAAGTTCTTGCGTCATCTAGTTAAGGGTCTACCAGTTGATACTTCCGTTCTTCGAAGAAACATTGGTGGAGATGGAGATGACACTGGTGACGGAGATTCTGCAGGACTAGGAGGTGGTAGTAAGAGTCCGACAAATGACAAGGACAAACAGCGCGCCGGTGAAAATTAG

Coding sequence (CDS)

ATGGAAAAGGAATTCGACCCACCATCTAGTGATGATTTCGTCGACGAGGGACATGCAAGCGAGCAAGTGCTGCCTGCAATGGAAGGTCGTGAAGTGCAGCATGATGTCACCCATGTTGATCCTGATGTCCCGACCATGGATGCAAATGTACAAGGTAAGGTGAAGACCAAGAGTGGCAAGAAGCATCAGTGCAAATGCAAGTCAGGCTTGAGGATCCTGACTGAGCAGGTGGCTGCTATAGATACGTGGCTTGCCAGTGTGGAACAGGTAGTCACTTCTATAGACGATCACGTCGTTGGCGTGGAAGGTGATTTGAAAAGTATTCGGAAGTTCTTGCGTCATCTAGTTAAGGGTCTACCAGTTGATACTTCCGTTCTTCGAAGAAACATTGGTGGAGATGGAGATGACACTGGTGACGGAGATTCTGCAGGACTAGGAGGTGGTAGTAAGAGTCCGACAAATGACAAGGACAAACAGCGCGCCGGTGAAAATTAG

Protein sequence

MEKEFDPPSSDDFVDEGHASEQVLPAMEGREVQHDVTHVDPDVPTMDANVQGKVKTKSGKKHQCKCKSGLRILTEQVAAIDTWLASVEQVVTSIDDHVVGVEGDLKSIRKFLRHLVKGLPVDTSVLRRNIGGDGDDTGDGDSAGLGGGSKSPTNDKDKQRAGEN

Homology

[Close]

BLAST of MC03g_new0091 vs. NCBI nr
Match: XP_022150329.1 (uncharacterized protein LOC111018527 [Momordica charantia] >XP_022150330.1 uncharacterized protein LOC111018527 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.18e-20
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 57  KSGKKH--QCKCKSGLRILTEQVAAIDTWLASVEQVVTSIDDHVVGVEGDLKSIRKFLRH 116
           K+GK+   + KCKS LR LT QVAAID  LA VE+VV+S++D    +EGDLK+IRKFLR 
Sbjct: 2   KTGKRSFSRYKCKSKLRALTGQVAAIDMRLAGVEEVVSSMNDRFNDMEGDLKTIRKFLRR 61

Query: 117 LVKGLPVDTSVLRRNIGGDGDDTGDGDSAGLG 146
           LVKGLPVDTS LR+N  GD D  G+G + G G
Sbjct: 62  LVKGLPVDTSKLRKNTNGDRDGNGNGYADGAG 93

[Close]

BLAST of MC03g_new0091 vs. ExPASy TrEMBL
Match: A0A6J1D868 (uncharacterized protein LOC111018527 OS=Momordica charantia OX=3673 GN=LOC111018527 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.73e-21
Identity = 56/92 (60.87%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 57  KSGKKH--QCKCKSGLRILTEQVAAIDTWLASVEQVVTSIDDHVVGVEGDLKSIRKFLRH 116
           K+GK+   + KCKS LR LT QVAAID  LA VE+VV+S++D    +EGDLK+IRKFLR 
Sbjct: 2   KTGKRSFSRYKCKSKLRALTGQVAAIDMRLAGVEEVVSSMNDRFNDMEGDLKTIRKFLRR 61

Query: 117 LVKGLPVDTSVLRRNIGGDGDDTGDGDSAGLG 146
           LVKGLPVDTS LR+N  GD D  G+G + G G
Sbjct: 62  LVKGLPVDTSKLRKNTNGDRDGNGNGYADGAG 93

The following BLAST results are available for this feature:

BLAST of MC03g_new0091 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g_new0091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150329.1	1.18e-20	60.87	uncharacterized protein LOC111018527 [Momordica charantia] >XP_022150330.1 uncha...	[more]

BLAST of MC03g_new0091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D868	5.73e-21	60.87	uncharacterized protein LOC111018527 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of MC03g_new0091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g_new0091.1	MC03g_new0091.1	mRNA