MC00g_new0684 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0684
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	syntaxin-41-like
Location	scaffold31: 769652 .. 771433 (-)
RNA-Seq Expression	MC00g_new0684
Synteny	MC00g_new0684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGGTGAGCTCGTCGTTGCTGAATCCGAATTAGACTTATGCTCCCTTGAGTATTGAGGATCCGGGTAATTCAAAGTCTATCTCTGTCTATATACATATGTGCATGATGTGTGCTGGTATATGTGAATTTGATCCAAATCTCTTTTTTCAGTCTAAATCTTGAGAATTTAATGATGGAAAGTGAAATGTGGTTTGTGATGGTTTCGGTGTGGTAAGATCTTGTCTAAATTGAGATTTAGTGCCAGTTAGCAGTTACCATTTTCATGGAAGAAGGGGATGAGAAAATTGGATATGTAGGTGATTAAGGTTTGGAGTAGAGAGATGCGGAATTGGGTTGGTTCAAGAAGTGTTAAATTACCATTATAGAATCAAAGGACGCATTTTGCACAATTATGGTGGAATAACCGAGGGAACTAAGGGACCATTAAGTATAGAAGGAATGCATAGAAATTTGAAGAATGTCTGGTTTCTCTTTTGGTTATGATTACAAATTTCATCTCTAGCTGTGTATGTTTAATGCTTGAAATTTTAGAAGTTGGCATTATGTCTTGAGATTATGGCTGGAATTATGTATTGTGTCTATGCACAAATGTTGATTGGTTTAGCATGAGACGATTGACAAATAACCAAAAGGAAGTGAACATGTGGACAAAAATAGAAGGATACAATTAGTTAACAGTGTTATGGCAGAACTTGAATGAATTATGAGTTAAAAATTCAAGGCAGCAATTGAAAATCTTGTAAAGTTTGTATATATAAATAGACACATACATATAAGTTCTAAGTTCAATGACTAAACTTGTAATTGTTATTTTGCTAAAATCCCGCCCATATCATTATGTTATTGGCTTATGAGTTATTTCTTTGTTTATTAATGTAGTAAGAGTGCTCATACCGTGGGTCTGCCTCCAGCTTGGGTTGAAGTATCCGAAGAAATAGCTGCAAATGTGCAATGTGCATGAACGAAGATGATGAAGTTAGCTAAAGTTCATGCAAAGGCTTTAATGCCTTCATTAGTTTCTTCTCATTAGTTCCTCTATTCTGTCTCATTTTCCTTGATGGTTTTTCCACTGTCGGTTTTTCAGGTGACCCTTATGTTCTTTTATGACTTCCCCTCAGTCATTCCCATACCAATACCTTTTAAACCTTCTATTCCACTTGATGAGAAACTTCAAGGCATGAACACCTTCTTCACTTTTCCATAGCTTGCATTCTTTTTATTTGCCAATTTGATTACAAATTTTCGTGGTTTTGATGACAGCTTGATATACACGACGGCAAAGCTACTGATAAAGGTATGTTTAGATTCAATGTATGTATTTTTGAATTGTCTGGATTTTATTGGGTTATCAAAGATATTCAGCAGCACCTTGGCTTGTGAAAAGTTGTGAGATTAAGATGGAGGATTATTATGGGAATTCGCAGGACTTTTGTGATTTTTATTTTTCATGCAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA

mRNA sequence

ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGGCAAAGCTACTGATAAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA

Coding sequence (CDS)

ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCACCAGTTTCGGCATCGCCACCGACTAGTTCTGGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGGCAAAGCTACTGATAAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAATCTAAAGAATCTCATCTGACTCAGAAGATGAAGAAGAGGAGGAGGAAAATGAAGATGGCAACAGCAGCGGTGAAGAAGCATTACAAAATTTTTGGAGTTGATTGA

Protein sequence

MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELLDIHDGKATDKENAVVESKVSALKQTPKAAKTSQNAKKRRKSKESHLTQKMKKRRRKMKMATAAVKKHYKIFGVD

Homology

[Close]

BLAST of MC00g_new0684 vs. ExPASy Swiss-Prot
Match: O65359 (Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP SSS ++    T SG  GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MC00g_new0684 vs. ExPASy Swiss-Prot
Match: Q9SUJ1 (Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTG-----GPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

[Close]

BLAST of MC00g_new0684 vs. NCBI nr
Match: XP_022156434.1 (syntaxin-41-like [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.78e-15
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TLLFRKYRDALRSVRAPTSSSPVSASP TSSG GGP+IEL+
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. NCBI nr
Match: XP_023522691.1 (syntaxin-41-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 7.38e-15
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. NCBI nr
Match: KAG7030133.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. NCBI nr
Match: XP_022999413.1 (syntaxin-43-like [Cucurbita maxima])

HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. NCBI nr
Match: XP_023545297.1 (syntaxin-43-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 3.38e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL
Match: A0A6J1DTG3 (syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.63e-16
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TLLFRKYRDALRSVRAPTSSSPVSASP TSSG GGP+IEL+
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL
Match: A0A6J1KJM9 (syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.64e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL
Match: A0A6J1G576 (syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.64e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVR PT SSP SASP TSSGTGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL
Match: A0A6J1C856 (protein RCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111008859 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.56e-14
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 44  IELLDIHDGKATDKENAVVESKVSALKQTPKAAKTSQNAKKRRKSKES 91
           ++ LDIHDGKA D+ENAVVESKVSA+KQTPKAAKTSQNAKKRRKSKES
Sbjct: 410 LDQLDIHDGKAFDEENAVVESKVSAVKQTPKAAKTSQNAKKRRKSKES 457

[Close]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL
Match: A0A6J1FBL2 (syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.17e-13
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIELL 47
          MASRN+TL+FRKYRDALRSVRAPTSSSP   SP TSSG GGP+IEL+
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELV 47

[Close]

BLAST of MC00g_new0684 vs. TAIR 10
Match: AT5G26980.1 (syntaxin of plants 41 )

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP SSS ++    T SG  GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MC00g_new0684 vs. TAIR 10
Match: AT5G26980.2 (syntaxin of plants 41 )

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTGGPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP SSS ++    T SG  GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MC00g_new0684 vs. TAIR 10
Match: AT3G05710.1 (syntaxin of plants 43 )

HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTG-----GPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

[Close]

BLAST of MC00g_new0684 vs. TAIR 10
Match: AT3G05710.2 (syntaxin of plants 43 )

HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVRAPTSSSPVSASPPTSSGTG-----GPMIEL 47
          MA+RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

The following BLAST results are available for this feature:

BLAST of MC00g_new0684 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65359	7.2e-06	63.04	Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1	[more]
Q9SUJ1	1.4e-04	56.86	Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2	[more]

BLAST of MC00g_new0684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156434.1	1.78e-15	89.36	syntaxin-41-like [Momordica charantia]	[more]
XP_023522691.1	7.38e-15	82.98	syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG7030133.1	3.38e-14	82.98	Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022999413.1	3.38e-14	82.98	syntaxin-43-like [Cucurbita maxima]	[more]
XP_023545297.1	3.38e-14	82.98	syntaxin-43-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC00g_new0684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTG3	8.63e-16	89.36	syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1	[more]
A0A6J1KJM9	1.64e-14	82.98	syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1	[more]
A0A6J1G576	1.64e-14	82.98	syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1	[more]
A0A6J1C856	5.56e-14	87.50	protein RCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111008859 PE=4 SV=1	[more]
A0A6J1FBL2	2.17e-13	80.85	syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1	[more]

BLAST of MC00g_new0684 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26980.1	5.1e-07	63.04	syntaxin of plants 41	[more]
AT5G26980.2	5.1e-07	63.04	syntaxin of plants 41	[more]
AT3G05710.1	9.7e-06	56.86	syntaxin of plants 43	[more]
AT3G05710.2	9.7e-06	56.86	syntaxin of plants 43	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g_new0684.1	MC00g_new0684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048278	vesicle docking
biological_process	GO:0006906	vesicle fusion
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding