MC05g_new0144 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0144
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
LocationMC05: 7873895 .. 7874645 (+)
RNA-Seq ExpressionMC05g_new0144
SyntenyMC05g_new0144
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTATAGATGGCAAAGAGGGTTGGTTCACAGGGGTATATGGCCCTTCTTCCACTAGGGGTAGATTCGAGTTTTGGAGGGAGCTGGAAGATTTGGCAGGATTATGTCAGGGGGCGGTGCATTGGGGGAGATTTTAACGTGGCTAGATGGCTCACGGAGAAGGCTAGTAGCGTTGGTAGTAGAATCACTCGAAGCATGAAAGAGTTCAGTGCTCTAATAGTAGACTTGAATTTGAGGGACCCTCCTTTCGACAATGGCATCTTTACGTGGTCTAATATGAGAACTGCCCCCACTCTTTCCAGGTTAGATCGTTTCTTATGTACTAAAGATTGGATGAATGTTTTTGCAGATCAACGAGCCACTAGACTTGTTCGCACAACTTCTGACCACTTCCCAATTCAATTGGCAAATGAGGCTATCAAATGGGGGCCTACTCCTTTCAGATTTGAGAATGCATCGTTGGACTCTCCTCAACTGATCCCTCTGGTAGAAAACTGGTGGAAGGATAATCCATTGAGAGGATGGTTTAGTTATGGCTTCATGGAAAAACTGAAGGGTTTGAAGGGCATCCTTGTCCAATGGAACATAGATGTTCTTGGAAATGTGGGGAAAAAAAGGCAGAGTTTTCGAAAGCTATAGAGGCTCTTGACAAAAAGGAGAAAATGTGTACACTTATGGCTGAAGACGTCATATAAAGAACTAAACTAAAGGAGCAGCTTGTAGAGACGATTATTATTGAACAACGAATGTGGG

mRNA sequence

ATGGCAAAGAGGGTTGGTTCACAGGGGTATATGGCCCTTCTTCCACTAGGGGTAGATTCGAGTTTTGGAGGGAGCTGGAAGATTTGGCAGGATTATGTCAGGGGGCGGTGCATTGGGGGAGATTTTAACGTGGCTAGATGGCTCACGGAGAAGGCTAGTAGCGTTGGTAGTAGAATCACTCGAAGCATGAAAGAGTTCAGTGCTCTAATAGTAGACTTGAATTTGAGGGACCCTCCTTTCGACAATGGCATCTTTACGTGGTCTAATATGAGAACTGCCCCCACTCTTTCCAGGTTAGATCGTTTCTTATGTACTAAAGATTGGATGAATGTTTTTGCAGATCAACGAGCCACTAGACTTGTTCGCACAACTTCTGACCACTTCCCAATTCAATTGGCAAATGAGGCTATCAAATGGGGGCCTACTCCTTTCAGATTTGAGAATGCATCGTTGGACTCTCCTCAACTGATCCCTCTGGTAGAAAACTGGTGGAAGGATAATCCATTGAGAGGATGGTTTAGTTATGGCTTCATGGAAAAACTGAAGGGTTTGAAGGGCATCCTTGTCCAATGGAACATAGATGTTCTTGGAAATGTGGGGAAAAAAAGGCAGAGTTTTCGAAAGCTATAG

Coding sequence (CDS)

ATGGCAAAGAGGGTTGGTTCACAGGGGTATATGGCCCTTCTTCCACTAGGGGTAGATTCGAGTTTTGGAGGGAGCTGGAAGATTTGGCAGGATTATGTCAGGGGGCGGTGCATTGGGGGAGATTTTAACGTGGCTAGATGGCTCACGGAGAAGGCTAGTAGCGTTGGTAGTAGAATCACTCGAAGCATGAAAGAGTTCAGTGCTCTAATAGTAGACTTGAATTTGAGGGACCCTCCTTTCGACAATGGCATCTTTACGTGGTCTAATATGAGAACTGCCCCCACTCTTTCCAGGTTAGATCGTTTCTTATGTACTAAAGATTGGATGAATGTTTTTGCAGATCAACGAGCCACTAGACTTGTTCGCACAACTTCTGACCACTTCCCAATTCAATTGGCAAATGAGGCTATCAAATGGGGGCCTACTCCTTTCAGATTTGAGAATGCATCGTTGGACTCTCCTCAACTGATCCCTCTGGTAGAAAACTGGTGGAAGGATAATCCATTGAGAGGATGGTTTAGTTATGGCTTCATGGAAAAACTGAAGGGTTTGAAGGGCATCCTTGTCCAATGGAACATAGATGTTCTTGGAAATGTGGGGAAAAAAAGGCAGAGTTTTCGAAAGCTATAG

Protein sequence

MAKRVGSQGYMALLPLGVDSSFGGSWKIWQDYVRGRCIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTLSRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL
Homology
BLAST of MC05g_new0144 vs. NCBI nr
Match: XP_022145822.1 (uncharacterized protein LOC111015182 [Momordica charantia])

HSP 1 Score: 206 bits (525), Expect = 2.72e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 114 DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF 173
           DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF
Sbjct: 6   DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF 65

Query: 174 SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL 209
           SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL
Sbjct: 66  SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL 101

BLAST of MC05g_new0144 vs. NCBI nr
Match: XP_021820446.1 (uncharacterized protein LOC110762145 [Prunus avium])

HSP 1 Score: 155 bits (391), Expect = 3.72e-42
Identity = 77/168 (45.83%), Postives = 102/168 (60.71%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           CIGGDFNV R++++K++  G  +T SM+ F+  I D NLRDP   N  FTWSN R     
Sbjct: 136 CIGGDFNVVRFVSDKSN--GGGVTSSMRTFNNFINDTNLRDPRLLNASFTWSNGRENVVC 195

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL T  W + F + R   LVR TSDH PI+L    +KWGP PFRFEN  L+ P  
Sbjct: 196 RRLDRFLFTGGWEDCFPNFRQKALVRVTSDHCPIELDTSKLKWGPGPFRFENMWLEHPDF 255

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQ 204
               ++WW +  L GW  + FM +LK +KG L  W+ +V G+V   ++
Sbjct: 256 NRNFKDWWAEEHLIGWPGFNFMRRLKAVKGKLRVWSKEVFGDVAATKK 301

BLAST of MC05g_new0144 vs. NCBI nr
Match: RVX05091.1 (hypothetical protein CK203_020182 [Vitis vinifera])

HSP 1 Score: 154 bits (389), Expect = 2.92e-39
Identity = 75/172 (43.60%), Postives = 99/172 (57.56%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR+T SM++F + I +  L DPP  N  FTWSNM+ +P  
Sbjct: 96  CVGGDFNVIRRSSEKLG--GSRLTSSMRDFDSFIRECELLDPPLRNASFTWSNMQESPVC 155

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W  +F       L+R TSDH+PI L      WGPTPFRFEN  L  P  
Sbjct: 156 KRLDRFLYSNEWGQLFPQGIQETLIRRTSDHWPIALDTNPFMWGPTPFRFENMWLQHPSF 215

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRK 208
                NWW+     GW  + FM +L+ +K  L +WN    G + +K++S  K
Sbjct: 216 KENFRNWWRGFQGNGWEGHKFMRRLQFVKAKLKEWNKLSFGELNEKKKSILK 265

BLAST of MC05g_new0144 vs. NCBI nr
Match: XP_019077787.1 (PREDICTED: uncharacterized protein LOC104880237 [Vitis vinifera] >XP_019077788.1 PREDICTED: uncharacterized protein LOC104880237 [Vitis vinifera] >XP_019077789.1 PREDICTED: uncharacterized protein LOC104880237 [Vitis vinifera] >XP_019077790.1 PREDICTED: uncharacterized protein LOC104880237 [Vitis vinifera])

HSP 1 Score: 147 bits (371), Expect = 5.39e-39
Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR T SM+EF   I +  L DPP  N  FTWSNM+ +P  
Sbjct: 136 CVGGDFNVIRRSSEKLG--GSRFTSSMREFDGFIRESELHDPPLRNASFTWSNMQESPVC 195

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W   F       L R TSDH+PI L     KWGPTPFRFEN  L     
Sbjct: 196 KRLDRFLYSNEWELSFPQSLQEVLPRWTSDHWPIVLDTNPFKWGPTPFRFENMWLQHHSF 255

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQS 205
                +WW++    GW  + FM KL+ +K  L  WN +  G + +++++
Sbjct: 256 KECFSSWWREFEGNGWEGHKFMRKLQFVKAKLKDWNKNTFGMLKERKKT 302

BLAST of MC05g_new0144 vs. NCBI nr
Match: RVW36761.1 (hypothetical protein CK203_101569 [Vitis vinifera])

HSP 1 Score: 147 bits (371), Expect = 9.21e-39
Identity = 74/169 (43.79%), Postives = 94/169 (55.62%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR+T SMK+F   I D  L D P  +  +TWSNM+  P  
Sbjct: 72  CVGGDFNVIRRSSEKLG--GSRLTPSMKDFDDFIRDCELIDSPLRSASYTWSNMQENPVC 131

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W  VF       L R TSDH+PI L     KWGPTPF+FEN  L  P  
Sbjct: 132 KRLDRFLYSNEWEQVFRQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFKFENMWLQHPSF 191

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQS 205
                 WW++    GW  + FM KL+ +K  L +WN    G + KK++ 
Sbjct: 192 KENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKD 238

BLAST of MC05g_new0144 vs. ExPASy TrEMBL
Match: A0A6J1CXT6 (uncharacterized protein LOC111015182 OS=Momordica charantia OX=3673 GN=LOC111015182 PE=4 SV=1)

HSP 1 Score: 206 bits (525), Expect = 1.31e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 114 DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF 173
           DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF
Sbjct: 6   DQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWF 65

Query: 174 SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL 209
           SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL
Sbjct: 66  SYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRKL 101

BLAST of MC05g_new0144 vs. ExPASy TrEMBL
Match: A0A6P5T1U8 (uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.80e-42
Identity = 77/168 (45.83%), Postives = 102/168 (60.71%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           CIGGDFNV R++++K++  G  +T SM+ F+  I D NLRDP   N  FTWSN R     
Sbjct: 136 CIGGDFNVVRFVSDKSN--GGGVTSSMRTFNNFINDTNLRDPRLLNASFTWSNGRENVVC 195

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL T  W + F + R   LVR TSDH PI+L    +KWGP PFRFEN  L+ P  
Sbjct: 196 RRLDRFLFTGGWEDCFPNFRQKALVRVTSDHCPIELDTSKLKWGPGPFRFENMWLEHPDF 255

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQ 204
               ++WW +  L GW  + FM +LK +KG L  W+ +V G+V   ++
Sbjct: 256 NRNFKDWWAEEHLIGWPGFNFMRRLKAVKGKLRVWSKEVFGDVAATKK 301

BLAST of MC05g_new0144 vs. ExPASy TrEMBL
Match: A0A438J819 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_020182 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.41e-39
Identity = 75/172 (43.60%), Postives = 99/172 (57.56%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR+T SM++F + I +  L DPP  N  FTWSNM+ +P  
Sbjct: 96  CVGGDFNVIRRSSEKLG--GSRLTSSMRDFDSFIRECELLDPPLRNASFTWSNMQESPVC 155

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W  +F       L+R TSDH+PI L      WGPTPFRFEN  L  P  
Sbjct: 156 KRLDRFLYSNEWGQLFPQGIQETLIRRTSDHWPIALDTNPFMWGPTPFRFENMWLQHPSF 215

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRK 208
                NWW+     GW  + FM +L+ +K  L +WN    G + +K++S  K
Sbjct: 216 KENFRNWWRGFQGNGWEGHKFMRRLQFVKAKLKEWNKLSFGELNEKKKSILK 265

BLAST of MC05g_new0144 vs. ExPASy TrEMBL
Match: A0A438DMS8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_101569 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 4.46e-39
Identity = 74/169 (43.79%), Postives = 94/169 (55.62%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR+T SMK+F   I D  L D P  +  +TWSNM+  P  
Sbjct: 72  CVGGDFNVIRRSSEKLG--GSRLTPSMKDFDDFIRDCELIDSPLRSASYTWSNMQENPVC 131

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W  VF       L R TSDH+PI L     KWGPTPF+FEN  L  P  
Sbjct: 132 KRLDRFLYSNEWEQVFRQSLQGVLPRWTSDHWPIVLETNPFKWGPTPFKFENMWLQHPSF 191

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQS 205
                 WW++    GW  + FM KL+ +K  L +WN    G + KK++ 
Sbjct: 192 KENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKD 238

BLAST of MC05g_new0144 vs. ExPASy TrEMBL
Match: A5B9I8 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012933 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 4.56e-39
Identity = 74/172 (43.02%), Postives = 99/172 (57.56%), Query Frame = 0

Query: 37  CIGGDFNVARWLTEKASSVGSRITRSMKEFSALIVDLNLRDPPFDNGIFTWSNMRTAPTL 96
           C+GGDFNV R  +EK    GSR+T SM++F + I +  L DPP  N  FTWSNM+ +P  
Sbjct: 805 CVGGDFNVIRRSSEKLG--GSRLTSSMRDFDSFIXESELLDPPLRNASFTWSNMQESPVC 864

Query: 97  SRLDRFLCTKDWMNVFADQRATRLVRTTSDHFPIQLANEAIKWGPTPFRFENASLDSPQL 156
            RLDRFL + +W  +F       L+R TSDH+PI L      WGPTPFRFEN  L  P  
Sbjct: 865 KRLDRFLYSNEWGQLFPQGIQETLIRRTSDHWPIALDTNPFMWGPTPFRFENMWLQHPSF 924

Query: 157 IPLVENWWKDNPLRGWFSYGFMEKLKGLKGILVQWNIDVLGNVGKKRQSFRK 208
                NWW+     GW  + FM +L+ +K  + +WN    G + +K++S  K
Sbjct: 925 KENFRNWWRGFQGNGWEGHKFMRRLQFVKAKVKEWNKLSFGXLNEKKKSILK 974

BLAST of MC05g_new0144 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-08
Identity = 48/195 (24.62%), Postives = 77/195 (39.49%), Query Frame = 0

Query: 20  SSFGGSWKIWQDYV---------RGRCIGGDFNVARWLTEKASSVGSRI-TRSMKEFSAL 79
           S  G  W +W   V         +   + GDF+     ++  S + + I  R ++EF   
Sbjct: 196 SELGRIWIVWDPSVSVLVFKKTDQLMILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNC 255

Query: 80  IVDLNLRDPPFDNGIFTWSNMR-TAPTLSRLDRFLCTKDWMNVFADQRATRLVRTTSDHF 139
           + D +L D P     +TWSN +   P + +LDR +   DW + F    A   +   SDH 
Sbjct: 256 LRDSDLVDIPSRGVHYTWSNHQDDNPIIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHS 315

Query: 140 PIQLANEAI-KWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWFSYGFMEKLKGLKGI 199
           P  +  E + K     FR+ +     P  +  +   W++    G   +   E LK  K  
Sbjct: 316 PCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKC 375

Query: 200 LVQWNIDVLGNVGKK 203
               N    GN+  K
Sbjct: 376 CKLLNRQGFGNIQHK 390

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022145822.12.72e-65100.00uncharacterized protein LOC111015182 [Momordica charantia][more]
XP_021820446.13.72e-4245.83uncharacterized protein LOC110762145 [Prunus avium][more]
RVX05091.12.92e-3943.60hypothetical protein CK203_020182 [Vitis vinifera][more]
XP_019077787.15.39e-3943.20PREDICTED: uncharacterized protein LOC104880237 [Vitis vinifera] >XP_019077788.1... [more]
RVW36761.19.21e-3943.79hypothetical protein CK203_101569 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A6J1CXT61.31e-65100.00uncharacterized protein LOC111015182 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6P5T1U81.80e-4245.83uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE... [more]
A0A438J8191.41e-3943.60zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_020182 PE=4... [more]
A0A438DMS84.46e-3943.79Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_101569 PE=4 SV=1[more]
A5B9I84.56e-3943.02Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... [more]
Match NameE-valueIdentityDescription
AT1G43760.16.1e-0824.62DNAse I-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 26..133
e-value: 9.3E-13
score: 50.5
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 36..131
NoneNo IPR availablePANTHERPTHR33710:SF28SUBFAMILY NOT NAMEDcoord: 26..205
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 26..205

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0144.1MC05g_new0144.1mRNA