MC08g_new0381 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0381
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like
Location	MC08: 19492645 .. 19492985 (+)
RNA-Seq Expression	MC08g_new0381
Synteny	MC08g_new0381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAGAGCCATTGGAGCACTCGGATTCGGCCACAGTCGAAATCCACTGCCAAATTGCACCTGGTGCAATTCGCACTCTACCGGCCACTCTACAAAGTATTTCGTCTCCCAAATTTCCAGATCTTACTTTGACTAAAAAGCCTTTAGATTTTGATGATTTATAACAGGAGAAGATGACGTCGAAAATTGTCGAAATTTTGGTGGCCTTGAATGAAGCAAAGGGAGAAGATCTATTAGAGGATGATGAAAATAGTGGGGAAGCTCAAGGAAGACTGAACTTTGACGGAGAGGATGAAGGTCTTGGAGATTTACCCCAAGAAGTCCATGGAGATGAGTGA

mRNA sequence

ATGACACAGAGCCATTGGAGCACTCGGATTCGGCCACAGTCGAAATCCACTGCCAAATTGCACCTGGTGCAATTCGCACTCTACCGGCCACTCTACAAAGAGAAGATGACGTCGAAAATTGTCGAAATTTTGGTGGCCTTGAATGAAGCAAAGGGAGAAGATCTATTAGAGGATGATGAAAATAGTGGGGAAGCTCAAGGAAGACTGAACTTTGACGGAGAGGATGAAGGTCTTGGAGATTTACCCCAAGAAGTCCATGGAGATGAGTGA

Coding sequence (CDS)

ATGACACAGAGCCATTGGAGCACTCGGATTCGGCCACAGTCGAAATCCACTGCCAAATTGCACCTGGTGCAATTCGCACTCTACCGGCCACTCTACAAAGAGAAGATGACGTCGAAAATTGTCGAAATTTTGGTGGCCTTGAATGAAGCAAAGGGAGAAGATCTATTAGAGGATGATGAAAATAGTGGGGAAGCTCAAGGAAGACTGAACTTTGACGGAGAGGATGAAGGTCTTGGAGATTTACCCCAAGAAGTCCATGGAGATGAGTGA

Protein sequence

MTQSHWSTRIRPQSKSTAKLHLVQFALYRPLYKEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEGLGDLPQEVHGDE

Homology

[Close]

BLAST of MC08g_new0381 vs. NCBI nr
Match: XP_022158483.1 (uncharacterized protein LOC111024964 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 4.43e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 33  KEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEGLGDLPQEVHGDE 89
           +E+ TSKI +ILVALNEA GED LEDD NS EAQGRLN DGEDE LGDLPQEVHGDE
Sbjct: 177 QERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDLGDLPQEVHGDE 233

[Close]

BLAST of MC08g_new0381 vs. NCBI nr
Match: XP_022144472.1 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 6.41e-11
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 31  LYKEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEGLGDLP 82
           L +E+ T KI EILVALNEA+GED LEDD N+G AQG+LN DGEDE LG+LP
Sbjct: 706 LEQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDLGELP 757

[Close]

BLAST of MC08g_new0381 vs. ExPASy TrEMBL
Match: A0A6J1DW79 (uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024964 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.15e-17
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 33  KEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEGLGDLPQEVHGDE 89
           +E+ TSKI +ILVALNEA GED LEDD NS EAQGRLN DGEDE LGDLPQEVHGDE
Sbjct: 177 QERTTSKITKILVALNEATGEDPLEDDGNSREAQGRLNVDGEDEDLGDLPQEVHGDE 233

[Close]

BLAST of MC08g_new0381 vs. ExPASy TrEMBL
Match: A0A6J1CTS8 (LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=3673 GN=LOC111014153 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.11e-11
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 31  LYKEKMTSKIVEILVALNEAKGEDLLEDDENSGEAQGRLNFDGEDEGLGDLP 82
           L +E+ T KI EILVALNEA+GED LEDD N+G AQG+LN DGEDE LG+LP
Sbjct: 706 LEQERTTPKIDEILVALNEARGEDPLEDDGNNGAAQGQLNVDGEDEDLGELP 757

The following BLAST results are available for this feature:

BLAST of MC08g_new0381 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158483.1	4.43e-17	80.70	uncharacterized protein LOC111024964 [Momordica charantia]	[more]
XP_022144472.1	6.41e-11	71.15	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like [Momordica charantia]	[more]

BLAST of MC08g_new0381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW79	2.15e-17	80.70	uncharacterized protein LOC111024964 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1CTS8	3.11e-11	71.15	LOW QUALITY PROTEIN: ATP-dependent helicase NAM7-like OS=Momordica charantia OX=...	[more]

BLAST of MC08g_new0381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0381.1	MC08g_new0381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004386	helicase activity