MC04g_new0538 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0538
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionProlamin_like domain-containing protein
LocationMC04: 21447510 .. 21448955 (-)
RNA-Seq ExpressionMC04g_new0538
SyntenyMC04g_new0538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTTACTCAATAACTCGTATGAAAAAAAAAACTTTTTTCTTAACGTAGCGGTAAGATTTTTAATATGTTGAAGGGAAAAAAATATAGAATAGCCTTTTTTTTTTTGAAAAACAAAAATAGAATAACTTTTTCTTTTTTTTTTTTTTCCTAAAAGGTCTTATTATTTTTTTAGTACAAAACTGAATACGGGAGACTCAAACTCATATGACCTCTTGATTAGAGATATTGCCAATGACGTAAATAGCTTTACGAAAAGATGGATATTATAATATTTAATATTTTTAATATTATATTCTCTCTCTAATTTTACAGTATAAATTGAAGTTATCTCACTAAACTCAACAATAATAATTCATTTAATCAATATGCATGGTGTTACTTTATGTTACATTGTTTTTCTCTTCATTGAAGTGATTTTAACAAATTATTCATTAATATAATCACACTTATAAATAGCTTTGTGTTTTTAAAAAGCACAAGAAAAGTCGGAGGGAACCAAAAAAAAAAAAAACAGAGAGAGAAAGAAATACTTTCAACTCAACAATGACAAAGGGAATTAAAAGGATTGCACCAGCACTGGTGGTGGTTCTTTTATTGGTACTAAATTTGTCAGCCTTCGGTCAACCTTCAATAGTAGACGACGACAACTACATGTCACCCATATGGAATGGATGGATAGACGAAGATAGAGGGATAAATCTAAGACGGTGTATAGTTAGAGTGAAGAGTGAAAAATGTCAAGTGGAAGTTTATAAATATTACTTCAATATAAACAAGAAGGAAGTGGATCTAAGTTGTTGTGTATTTGTTAAAGCCATGGGCGAAGGGTGCGCTCTAGATTTTGCAGGTTGGTTCGATTTTCCTGAGTTCGAAGTCTTAAAGCCGAATCCTATGGAGCTTTACAAAGATTGTAAAACAAGACTCGCTGCTTCCCCACCCAGGCCACTTTAAATCTTATATTTAGTTTTTATATATTTGATCAATAAATAACATATTTATTTATTTTAACGTGTGAATGAATCAATCCATTTATTTTATTCTCTTTATGATCTTTAATCAGATTTATAGACGGTTGAAGGAATTCTCATGATTCTCCATACCTCTTTTAGTCGGCAATTTTAACAGAAGAGGAAAGGAATATGAAATATAAAGGTCTTTGGCAGATCTATAACTTTTTTTAACGAGGATTTTATATAAAATTCAGTAAATATGCTCCACGATCTTGGTAAGTATTACTGTATAGATTGTAGATCTAAAACTTTATATTAGGGGATTGTATAAAATAATTTGAATGTATGGATATATATTTAGTTTATATATTTTTATACGCAATTAGTTAAGTTACAAGCTTTGTTTCCCTTAAAATTTCAATATTATGTTTAATAATTGGTCTTTAGACTTAAAAAAGTTTATATATTACAAATTTCTTGAACTAATAGATTAT

mRNA sequence

ATGACAAAGGGAATTAAAAGGATTGCACCAGCACTGGTGGTGGTTCTTTTATTGGTACTAAATTTGTCAGCCTTCGGTCAACCTTCAATAGTAGACGACGACAACTACATGTCACCCATATGGAATGGATGGATAGACGAAGATAGAGGGATAAATCTAAGACGGTGTATAGTTAGAGTGAAGAGTGAAAAATGTCAAGTGGAAGTTTATAAATATTACTTCAATATAAACAAGAAGGAAGTGGATCTAAGTTGTTGTGTATTTGTTAAAGCCATGGGCGAAGGGTGCGCTCTAGATTTTGCAGGTTGGTTCGATTTTCCTGAGTTCGAAGTCTTAAAGCCGAATCCTATGGAGCTTTACAAAGATTGTAAAACAAGACTCGCTGCTTCCCCACCCAGGCCACTTTAA

Coding sequence (CDS)

ATGACAAAGGGAATTAAAAGGATTGCACCAGCACTGGTGGTGGTTCTTTTATTGGTACTAAATTTGTCAGCCTTCGGTCAACCTTCAATAGTAGACGACGACAACTACATGTCACCCATATGGAATGGATGGATAGACGAAGATAGAGGGATAAATCTAAGACGGTGTATAGTTAGAGTGAAGAGTGAAAAATGTCAAGTGGAAGTTTATAAATATTACTTCAATATAAACAAGAAGGAAGTGGATCTAAGTTGTTGTGTATTTGTTAAAGCCATGGGCGAAGGGTGCGCTCTAGATTTTGCAGGTTGGTTCGATTTTCCTGAGTTCGAAGTCTTAAAGCCGAATCCTATGGAGCTTTACAAAGATTGTAAAACAAGACTCGCTGCTTCCCCACCCAGGCCACTTTAA

Protein sequence

MTKGIKRIAPALVVVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYYFNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPPRPL
Homology
BLAST of MC04g_new0538 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (428), Expect = 2.05e-51
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0

Query: 14  VVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYY 73
           V+LLL +NL+   QPS  DDD Y SPIW+ W+DEDRGINLR C+  +KS KCQVE+Y YY
Sbjct: 5   VILLLAINLAFLAQPSTADDD-YNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 64

Query: 74  FNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPPR 133
           FNI+KKE+DL+CCVFVK MG+ CA  FAGWF FPEFEV + NPM++YK+C  RL A PP 
Sbjct: 65  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 124

BLAST of MC04g_new0538 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 1.79e-47
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 0

Query: 15  VLLLVLNLSAFGQPSIVD-DDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYY 74
           +LLL +NL+    PS+ D DD+Y SPIWNGW+DEDR  NLR C+  +KS KCQV++Y YY
Sbjct: 14  ILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMMKSAKCQVQLYNYY 73

Query: 75  FNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPPR 134
           FNI+KKE+DL CCVFVK MG+ CA  FAGW++FP  EV +PNPM +Y +C  RL A PP 
Sbjct: 74  FNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVYNNCVGRLQALPPT 133

BLAST of MC04g_new0538 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 5.32e-47
Identity = 72/122 (59.02%), Postives = 92/122 (75.41%), Query Frame = 0

Query: 13  VVVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKY 72
           +V+LL  +NLS   Q S VD+D Y SPIW+GW+DEDRG  LR C+ R++S KCQVE+Y Y
Sbjct: 4   IVILLFAINLSKLVQSSGVDED-YNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNY 63

Query: 73  YFNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPP 132
           YFNI+KKE+DL+CCVFVK MG+ CA  F  W+ FP  E+ +PNPM++Y +C TRL A PP
Sbjct: 64  YFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPP 123

Query: 133 RP 134
            P
Sbjct: 124 AP 124

BLAST of MC04g_new0538 vs. NCBI nr
Match: KAG6575249.1 (hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (385), Expect = 9.20e-45
Identity = 72/119 (60.50%), Postives = 90/119 (75.63%), Query Frame = 0

Query: 14  VVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYY 73
           VVLLL +NL  F + +  D D Y SPIW+ W+DEDR   LR C+  +KS KCQV++Y  Y
Sbjct: 12  VVLLLAVNLQGFVRVTSADVD-YNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNY 71

Query: 74  FNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPP 132
           FN++K+E+DL+CCVFVK MG+ CALDFAGWFD+P FEV KPNPM LYK C  RL++S P
Sbjct: 72  FNLSKEELDLNCCVFVKVMGKNCALDFAGWFDYPIFEVYKPNPMNLYKRCVARLSSSIP 129

BLAST of MC04g_new0538 vs. NCBI nr
Match: KAG6575254.1 (hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (383), Expect = 1.36e-44
Identity = 72/123 (58.54%), Postives = 95/123 (77.24%), Query Frame = 0

Query: 14  VVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYY 73
           VVLLLV+NL  F + +  DDD Y SPIW+ W+DEDR   LR C+  +KS KCQV++Y  Y
Sbjct: 2   VVLLLVVNLQGFVRVTRADDD-YNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNY 61

Query: 74  FNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAAS-PP 133
           FN++K+E+DL+CCVF++ MG+ C L+FAGWF++P FEV KPNPM+LYK C  RL++S PP
Sbjct: 62  FNLSKEELDLNCCVFIQVMGKKCTLNFAGWFNYPIFEVYKPNPMKLYKRCIARLSSSIPP 121

Query: 134 RPL 135
            PL
Sbjct: 122 MPL 123

BLAST of MC04g_new0538 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 159 bits (403), Expect = 8.67e-48
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 0

Query: 15  VLLLVLNLSAFGQPSIVD-DDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYY 74
           +LLL +NL+    PS+ D DD+Y SPIWNGW+DEDR  NLR C+  +KS KCQV++Y YY
Sbjct: 14  ILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMMKSAKCQVQLYNYY 73

Query: 75  FNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPPR 134
           FNI+KKE+DL CCVFVK MG+ CA  FAGW++FP  EV +PNPM +Y +C  RL A PP 
Sbjct: 74  FNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVYNNCVGRLQALPPT 133

BLAST of MC04g_new0538 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 2.57e-47
Identity = 72/122 (59.02%), Postives = 92/122 (75.41%), Query Frame = 0

Query: 13  VVVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKY 72
           +V+LL  +NLS   Q S VD+D Y SPIW+GW+DEDRG  LR C+ R++S KCQVE+Y Y
Sbjct: 4   IVILLFAINLSKLVQSSGVDED-YNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNY 63

Query: 73  YFNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPP 132
           YFNI+KKE+DL+CCVFVK MG+ CA  F  W+ FP  E+ +PNPM++Y +C TRL A PP
Sbjct: 64  YFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPP 123

Query: 133 RP 134
            P
Sbjct: 124 AP 124

BLAST of MC04g_new0538 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 6.13e-45
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 6   KRIAPALVVVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKC 65
           K  A   +V+LL  +NL+   Q S VD+D Y S IWN W+DEDR   LR C+ R++S KC
Sbjct: 4   KTNAMRAMVILLSAINLAKLVQSSGVDED-YNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 63

Query: 66  QVEVYKYYFNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKT 125
           QVE+Y YYFNI+KKE+DL+CCVFVK MG+ CA  F  W+ FP  E+ +PNPM++Y +C T
Sbjct: 64  QVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCAT 123

Query: 126 RLAASPPRPL 135
           RL+A PP P+
Sbjct: 124 RLSAPPPTPI 132

BLAST of MC04g_new0538 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 1.14e-40
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = 0

Query: 7   RIAPALVVVLLLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQ 66
           R+   +V++ LLV++  A  QPS VDD N +S IW+ W+DEDR   L  C+  ++SEKCQ
Sbjct: 6   RVLLVVVMLSLLVVDSLALVQPSTVDD-NGISSIWSDWLDEDRAPTLAPCLHMMRSEKCQ 65

Query: 67  VEVYKYYFNINKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTR 126
           VE+Y YYFNI+KKE+DLSCCV+V  MG+ CA  F  WF FP  E LKPNPM++Y +C  R
Sbjct: 66  VELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNCFKR 125

Query: 127 LAASPPRPL 135
           L    P PL
Sbjct: 126 LTFPAPTPL 133

BLAST of MC04g_new0538 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 2.74e-37
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0

Query: 17  LLVLNLSAFGQPSIVDDDNYMSPIWNGWIDEDRGINLRRCIVRVKSEKCQVEVYKYYFNI 76
           LLV++  A   PSI+DD N +S IW+GWID+DR   L  C+  +KS+KCQVE+Y YYFN 
Sbjct: 19  LLVVDSLALVHPSIIDD-NGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYYFNK 78

Query: 77  NKKEVDLSCCVFVKAMGEGCALDFAGWFDFPEFEVLKPNPMELYKDCKTRLAASPP 132
           +KKEVDLSCCV+V  +GE CA  F  WF    F+ LKPNPM+LY +C  RL    P
Sbjct: 79  SKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6578867.12.05e-5165.29hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0046841.11.79e-4760.33hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044... [more]
KAA0046835.15.32e-4759.02hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004... [more]
KAG6575249.19.20e-4560.50hypothetical protein SDJN03_25888, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575254.11.36e-4458.54hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7TZR18.67e-4860.33Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3C2802.57e-4759.02Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0KEB86.13e-4554.62Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543... [more]
A0A0A0KQ411.14e-4053.49Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818... [more]
A0A0A0L5352.74e-3755.17Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 56..123
e-value: 6.8E-7
score: 29.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g_new0538.1MC04g_new0538.1mRNA