Tan0002430 (gene) Snake gourd v1

Overview


Name	Tan0002430
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S acidic ribosomal protein P1-like
Location	LG10: 593846 .. 595215 (+)
RNA-Seq Expression	Tan0002430
Synteny	Tan0002430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAAGCAGCGTTCCAGAAATAATGCAAGCCCACATCTGAAGCTTCAATAAAAACCCGACCTTCAGGAGCTTCCCAAACCCTAGAACGCTTCCGTGTTGCGCAGCGAAGAACAGACTCTTTAGAGCCTCCGACATCGCCTATTTCTTCTGGTCCGAAATCTCTCTCTCATTCAATCTGCAAGTGTTTTTCTTCATTCTTTTTTTTCTGTAATGCATTCGATTTCTAATGCTCCATGATTTGTGTTGTTTTTCTACATTTCTTCTTCCGTAATTTTGCTTGCTTTTGAACGTGCAGTGAAAAATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTATGATCCTCTACGATGATAACATCCCTATTACCGTATGAATCCTGGCAGCCTCCTTCAATATTTAATTTATCTCTTAGTAATTACTTTCCGGATCTCGTTTAACAATTTCAAAGTAATTAGTAGGGAGATTACCATGTGCTATTCAAAGGGATTAGTGTAAATGTTCGGGGTATTAACATTTTGCTTGATTCCTATTTAAGAGATTAAATACGAAATGTGGAGCATCAAACTGTTCGGGTTTTCGCTCATTTATATTTACAAAACCACGCATACTACTACAATCTGGATATTTTTCTACTGTTATTATACCTTTTCTGGCCTGTTTATATAATTTGTTCCCATTTGTTCCCATTATTTGTTCTTATGAATTTCTGTGATTGCGTCTGCTGTATCATCTGTATGGAAATAAGATTGTAAAATGTGTTTTTTTAACAGCCAGAGAAGCTTGCCACGCTTGTGAAAGCTGCTAAAGTGAATGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTTGCTGAGAAGCGTAACATTGGGGATTTGATCCTGAATGTTGGGGCTGGCGGAGGTGCCCCAGTCGCGGCTGCCGTCCCAGCTGGTGGAGCTGCTGGTGGTGCTGCTGCCGCAGCTGCTCCTCCTCCTGAAGAGAAGAAGGTATAACGATATAGCCATTTCAATTCTAATAATTACACTGTTCTTATCTGTCTTGAAAGATTGGTTTTGATGTATTGTACATGATCATGACATGTTATTATTTTTGTTACTTGCAGGAGGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGGTCATATGGCTTTGCATATTTCGAACTAGGTTGATTATCTTTTGAATACCGGAGCCTCTCTTGTTTTATTTACAGATATGTAATTTTGGACATCATGACATTTGCCAGAAGTTTTGATTTGAATATGATCTGATTGCAACTTTTCAGTTGAGATAAATTATATTTTATGCATCTTTATGTCCTCCCAATACGCTAGATATTGAAATGCTG

mRNA sequence

GTCCAAGCAGCGTTCCAGAAATAATGCAAGCCCACATCTGAAGCTTCAATAAAAACCCGACCTTCAGGAGCTTCCCAAACCCTAGAACGCTTCCGTGTTGCGCAGCGAAGAACAGACTCTTTAGAGCCTCCGACATCGCCTATTTCTTCTGTGAAAAATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTATGATCCTCTACGATGATAACATCCCTATTACCCCAGAGAAGCTTGCCACGCTTGTGAAAGCTGCTAAAGTGAATGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTTGCTGAGAAGCGTAACATTGGGGATTTGATCCTGAATGTTGGGGCTGGCGGAGGTGCCCCAGTCGCGGCTGCCGTCCCAGCTGGTGGAGCTGCTGGTGGTGCTGCTGCCGCAGCTGCTCCTCCTCCTGAAGAGAAGAAGGAGGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGGTCATATGGCTTTGCATATTTCGAACTAGGTTGATTATCTTTTGAATACCGGAGCCTCTCTTGTTTTATTTACAGATATGTAATTTTGGACATCATGACATTTGCCAGAAGTTTTGATTTGAATATGATCTGATTGCAACTTTTCAGTTGAGATAAATTATATTTTATGCATCTTTATGTCCTCCCAATACGCTAGATATTGAAATGCTG

Coding sequence (CDS)

ATGTCGACCGGAGAAATTGCTTGCTCCTATGCTGCTATGATCCTCTACGATGATAACATCCCTATTACCCCAGAGAAGCTTGCCACGCTTGTGAAAGCTGCTAAAGTGAATGTGGAGTCTTACTGGTTCAGCCTTTTTGCTAAGCTTGCTGAGAAGCGTAACATTGGGGATTTGATCCTGAATGTTGGGGCTGGCGGAGGTGCCCCAGTCGCGGCTGCCGTCCCAGCTGGTGGAGCTGCTGGTGGTGCTGCTGCCGCAGCTGCTCCTCCTCCTGAAGAGAAGAAGGAGGAACCAAAGGAAGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAG

Protein sequence

MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLILNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD

Homology

[Close]

BLAST of Tan0002430 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 4.4e-34
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           M++GE+AC YAA+IL DD I IT EK+AT+VKAA + VESYW +LFAKL EKRN+ DLIL
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGAGGG-APVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +VG+GGG APVAAA P    AGGAAAAAAP  EEKKEE KEESDDDMGFSLFD
Sbjct: 61  SVGSGGGAAPVAAAAP----AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of Tan0002430 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 4.6e-31
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA---GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA   GGGAPV+AA P   AA G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAP---AAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-31
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA--GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA  GGGAPVAAA PA G  GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAG--GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-30
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V++ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA--GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA  GGGAPVAAA P   AAGG AAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAP---AAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of Tan0002430 vs. ExPASy Swiss-Prot
Match: P29763 (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           MST E+AC+YAA+IL+DD + IT + + T+ KAA V VE YW +LFAKL  K+++ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60

Query: 61  NVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           NVGAGGGA  AAA P   AAGGA AA A P +E+K+EP EE  +DMGFSLFD
Sbjct: 61  NVGAGGGAAPAAAAP---AAGGAPAAGAAPKKEEKKEPSEE--EDMGFSLFD 107

[Close]

BLAST of Tan0002430 vs. NCBI nr
Match: XP_008437779.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa] >TYK20773.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.0e-44
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+ATLVKAA V +VESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAAVPAGGAA G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. NCBI nr
Match: XP_022974253.1 (60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_023538866.1 60S acidic ribosomal protein P1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           MS GEIACSYAA+ILYDDNIP+T EKLATLVKAA V+ ESYWFSLFAKLAEKRNIGDLI+
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           NVGAGGGA VAAAVPAGG AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Tan0002430 vs. NCBI nr
Match: XP_004133766.1 (60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothetical protein Csa_009966 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+ATLVKAAKV +VESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAA PAGGAAGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. NCBI nr
Match: KAG6597015.1 (60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           MS GEIACSYAA+ILYDDNIP+T EKLATLVKAA V  ESYWFSLFAKLAEKRNIGDLI+
Sbjct: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77

Query: 61  NVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           NVGAGGGA VAAAVPAGG AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 78  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 128

[Close]

BLAST of Tan0002430 vs. NCBI nr
Match: XP_038883955.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 4.6e-44
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+AT+VKAA V +VESYWF LFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATIVKAANVPDVESYWFGLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAAVPA G AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPASGVAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy TrEMBL
Match: A0A5D3DB57 (60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00330 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.9e-45
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+ATLVKAA V +VESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAAVPAGGAA G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy TrEMBL
Match: A0A1S3AUG9 (60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 9.9e-45
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+ATLVKAA V +VESYW+SLFAKLAEKRNIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAAVPAGGAA G AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy TrEMBL
Match: A0A6J1ICK4 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 102/112 (91.07%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           MS GEIACSYAA+ILYDDNIP+T EKLATLVKAA V+ ESYWFSLFAKLAEKRNIGDLI+
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           NVGAGGGA VAAAVPAGG AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Tan0002430 vs. ExPASy TrEMBL
Match: A0A0A0L5M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKV-NVESYWFSLFAKLAEKRNIGDLI 60
           MSTGEIACSYAA+ILYDDNIPIT EK+ATLVKAAKV +VESYW+ LFAKLAEKR+IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           LNVGAGGGA VAAA PAGGAAGG AAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113

[Close]

BLAST of Tan0002430 vs. ExPASy TrEMBL
Match: A0A6J1GHG1 (60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC111454200 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSTGEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLIL 60
           MS GEIACSYAA+ILYDDNIP+T EKLATLVKAA V  ESYWFSLFAKLAEKRNIGDLI+
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           NVGAGGGA VAAAVPAGG AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD
Sbjct: 61  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of Tan0002430 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA---GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA   GGGAPV+AA P   AA G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAP---AAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family )

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-32
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA---GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA   GGGAPV+AA P   AA G AAAAAP  EEKK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAP---AAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA--GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA  GGGAPVAAA PA G  GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAG--GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-32
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V +ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA--GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA  GGGAPVAAA PA G  GGAAAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAG--GGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of Tan0002430 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MST-GEIACSYAAMILYDDNIPITPEKLATLVKAAKVNVESYWFSLFAKLAEKRNIGDLI 60
           MST GE+ACSYA MIL D+ I IT +K+ATLVKAA V++ESYW  LFAK+AEKRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNVGA--GGGAPVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLFD 113
           +NVGA  GGGAPVAAA P   AAGG AAAA    E+KK+EP EESD D+GF LFD
Sbjct: 61  MNVGAGGGGGAPVAAAAP---AAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

The following BLAST results are available for this feature:

BLAST of Tan0002430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	4.4e-34	73.45	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
O23095	4.6e-31	68.97	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
Q8LEQ0	6.0e-31	69.57	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	2.3e-30	68.70	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
P29763	1.3e-25	60.71	60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii OX=3055 PE=3 SV=1	[more]

BLAST of Tan0002430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437779.1	2.0e-44	91.15	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S...	[more]
XP_022974253.1	3.5e-44	91.07	60S acidic ribosomal protein P1-like [Cucurbita maxima] >XP_022975257.1 60S acid...	[more]
XP_004133766.1	3.5e-44	90.27	60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothetical prote...	[more]
KAG6597015.1	4.6e-44	91.07	60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038883955.1	4.6e-44	90.27	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]

BLAST of Tan0002430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB57	9.9e-45	91.15	60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AUG9	9.9e-45	91.15	60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=...	[more]
A0A6J1ICK4	1.7e-44	91.07	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378...	[more]
A0A0A0L5M7	1.7e-44	90.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1	[more]
A0A6J1GHG1	2.2e-44	91.07	60S acidic ribosomal protein P1-like OS=Cucurbita moschata OX=3662 GN=LOC1114542...	[more]

BLAST of Tan0002430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00810.1	3.3e-32	68.97	60S acidic ribosomal protein family	[more]
AT4G00810.2	3.3e-32	68.97	60S acidic ribosomal protein family	[more]
AT5G47700.1	4.3e-32	69.57	60S acidic ribosomal protein family	[more]
AT5G47700.2	4.3e-32	69.57	60S acidic ribosomal protein family	[more]
AT1G01100.1	1.6e-31	68.70	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 22..111 e-value: 1.7E-26 score: 92.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..106
None	No IPR available	PANTHER	PTHR45696:SF22	60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED	coord: 1..112
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 1..112
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 5..61 e-value: 1.31357E-26 score: 92.7699
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..63 e-value: 1.3E-29 score: 103.8
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 6..112 score: 14.509682

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002430.1	Tan0002430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032147	activation of protein kinase activity
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome