MC01g0763.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g0763.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 13749702 .. 13749923 (-)
Sequence length	222
RNA-Seq Expression	MC01g0763.1
Synteny	MC01g0763.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTCGAAACTGGTATCAAATTCCACAGCGATGAATGAATCTTCCCCATCTAAGGCCAGTTCTGGGAGACCCATATACCCGGGGCGGAAAGAATCCGCATTAGAGGTGATCAGAAACGCAATCCCATCTCCAGAAGGACACAGTGGGGAAGATAGTTTTGAGAAGGAGAAACGGCATGAGAAAGATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATA

mRNA sequence

GGGTCGAAACTGGTATCAAATTCCACAGCGATGAATGAATCTTCCCCATCTAAGGCCAGTTCTGGGAGACCCATATACCCGGGGCGGAAAGAATCCGCATTAGAGGTGATCAGAAACGCAATCCCATCTCCAGAAGGACACAGTGGGGAAGATAGTTTTGAGAAGGAGAAACGGCATGAGAAAGATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATA

Coding sequence (CDS)

GGGTCGAAACTGGTATCAAATTCCACAGCGATGAATGAATCTTCCCCATCTAAGGCCAGTTCTGGGAGACCCATATACCCGGGGCGGAAAGAATCCGCATTAGAGGTGATCAGAAACGCAATCCCATCTCCAGAAGGACACAGTGGGGAAGATAGTTTTGAGAAGGAGAAACGGCATGAGAAAGATGCGGTGGAGTTCGTCTCGGAATCAAGAAACCGAATA

Protein sequence

GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHEKDAVEFVSESRNRI

Homology

[Close]

BLAST of MC01g0763.1 vs. NCBI nr
Match: QCE05941.1 (hypothetical protein DEO72_LG9g950 [Vigna unguiculata])

HSP 1 Score: 54.7 bits (130), Expect = 1.88e-07
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1   GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
           GSK+VSNSTA  E    +   GRP+    K    E +R A PSPEG  GE+  EKEKR E
Sbjct: 31  GSKVVSNSTAKKEVELGEGW-GRPMERAGKW-VEEAMRKARPSPEGQEGEERMEKEKREE 90

Query: 61  KDAVEFVSESRNR 73
           K+AVE V  SR R
Sbjct: 91  KEAVELVWGSRKR 101

[Close]

BLAST of MC01g0763.1 vs. NCBI nr
Match: QCD79772.1 (hypothetical protein DEO72_LG2g88 [Vigna unguiculata])

HSP 1 Score: 52.8 bits (125), Expect = 9.36e-07
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA           GRP+    K    E +R A PSPEGH GE+  EKEKR E
Sbjct: 6  GSKVVSNSTAKEVELGEGW--GRPMERAGKW-VEEAMRKARPSPEGHEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVWGSR 73

[Close]

BLAST of MC01g0763.1 vs. NCBI nr
Match: QCD76517.1 (hypothetical protein DEO72_LG1g136 [Vigna unguiculata])

HSP 1 Score: 51.2 bits (121), Expect = 2.23e-06
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA NE    +   GRP+    K    E +R A PSPEG  GE+  EKEKR E
Sbjct: 6  GSKVVSNSTA-NEVELGEGW-GRPMERAGKW-VEEAMRKARPSPEGQEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVLGSR 73

[Close]

BLAST of MC01g0763.1 vs. NCBI nr
Match: QCD99215.1 (hypothetical protein DEO72_LG7g496 [Vigna unguiculata])

HSP 1 Score: 45.8 bits (107), Expect = 5.08e-04
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA           GRP+    K    E +R A PS +G  GE+  EKEKR E
Sbjct: 6  GSKVVSNSTAKEVELGEGW--GRPMERAEKW-VEEAMRKARPSSKGQEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVWGSR 73

[Close]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL
Match: A0A4D6MZ97 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.12e-08
Identity = 38/73 (52.05%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 1   GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
           GSK+VSNSTA  E    +   GRP+    K    E +R A PSPEG  GE+  EKEKR E
Sbjct: 31  GSKVVSNSTAKKEVELGEGW-GRPMERAGKW-VEEAMRKARPSPEGQEGEERMEKEKREE 90

Query: 61  KDAVEFVSESRNR 73
           K+AVE V  SR R
Sbjct: 91  KEAVELVWGSRKR 101

[Close]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL
Match: A0A4D6KQD9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g88 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.53e-07
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA           GRP+    K    E +R A PSPEGH GE+  EKEKR E
Sbjct: 6  GSKVVSNSTAKEVELGEGW--GRPMERAGKW-VEEAMRKARPSPEGHEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVWGSR 73

[Close]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL
Match: A0A4D6KLJ6 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g136 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.08e-06
Identity = 38/71 (53.52%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA NE    +   GRP+    K    E +R A PSPEG  GE+  EKEKR E
Sbjct: 6  GSKVVSNSTA-NEVELGEGW-GRPMERAGKW-VEEAMRKARPSPEGQEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVLGSR 73

[Close]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL
Match: A0A4D6MCX5 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g496 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.46e-04
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1  GSKLVSNSTAMNESSPSKASSGRPIYPGRKESALEVIRNAIPSPEGHSGEDSFEKEKRHE 60
          GSK+VSNSTA           GRP+    K    E +R A PS +G  GE+  EKEKR E
Sbjct: 6  GSKVVSNSTAKEVELGEGW--GRPMERAEKW-VEEAMRKARPSSKGQEGEERMEKEKREE 65

Query: 61 KDAVEFVSESR 71
          K+AVE V  SR
Sbjct: 66 KEAVELVWGSR 73

The following BLAST results are available for this feature:

BLAST of MC01g0763.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g0763.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QCE05941.1	1.88e-07	52.05	hypothetical protein DEO72_LG9g950 [Vigna unguiculata]	[more]
QCD79772.1	9.36e-07	52.11	hypothetical protein DEO72_LG2g88 [Vigna unguiculata]	[more]
QCD76517.1	2.23e-06	53.52	hypothetical protein DEO72_LG1g136 [Vigna unguiculata]	[more]
QCD99215.1	5.08e-04	47.89	hypothetical protein DEO72_LG7g496 [Vigna unguiculata]	[more]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6MZ97	9.12e-08	52.05	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g950 PE=4 SV=1	[more]
A0A4D6KQD9	4.53e-07	52.11	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g88 PE=4 SV=1	[more]
A0A4D6KLJ6	1.08e-06	53.52	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g136 PE=4 SV=1	[more]
A0A4D6MCX5	2.46e-04	47.89	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g496 PE=4 SV=1	[more]

BLAST of MC01g0763.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g0763	MC01g0763	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g0763.1-cds	MC01g0763.1-cds-MC01:13749702..13749923	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g0763.1	MC01g0763.1-protein	polypeptide