Tan0014620 (gene) Snake gourd v1

Overview
NameTan0014620
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG01: 99621796 .. 99622017 (-)
RNA-Seq ExpressionTan0014620
SyntenyTan0014620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAGCAGAGATCCGAACGCCTGTGACAGCAAGTTCGGAGTGGGTCGAGCTCTCAAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAATGA

mRNA sequence

ATGACTGTAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAGCAGAGATCCGAACGCCTGTGACAGCAAGTTCGGAGTGGGTCGAGCTCTCAAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAATGA

Coding sequence (CDS)

ATGACTGTAATAGAATATGAGAAGAAGTTCACAGAGTTATCAAAGTATGCTAGCACTATTGTTGCAAGCGAGATAGATCGATGCAAGAGGTTCGAGGATGGTTTGCGAGCAGAGATCCGAACGCCTGTGACAGCAAGTTCGGAGTGGGTCGAGCTCTCAAAGCTTGTGGAGACGGCATTACGAGTAGAGCGAAGCCTAGTAGATGACAGAATGGGAAAATGA

Protein sequence

MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETALRVERSLVDDRMGK
Homology
[Close]
BLAST of Tan0014620 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 56  LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 115

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 116 RVEQSIVEEK 125

[Close]
BLAST of Tan0014620 vs. NCBI nr
Match: KAA0057197.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 607 LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 666

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 667 RVEQSIVEEK 676

[Close]
BLAST of Tan0014620 vs. NCBI nr
Match: TYK18765.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 607 LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 666

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 667 RVEQSIVEEK 676

[Close]
BLAST of Tan0014620 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 6.9e-17
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPVTA ++W   S+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDR 71
           RVE+S+ +++
Sbjct: 268 RVEQSITEEK 277

[Close]
BLAST of Tan0014620 vs. NCBI nr
Match: KAA0036813.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 9.0e-17
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W + SKLVE AL
Sbjct: 140 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 199

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 200 RVEKSL 205

[Close]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match: A0A5D3D5E2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00700 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 607 LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 666

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 667 RVEQSIVEEK 676

[Close]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match: A0A5A7URC7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00290 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 607 LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 666

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 667 RVEQSIVEEK 676

[Close]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match: A0A1S3CMU0 (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 45/70 (64.29%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V+EYE+K+TELS+YA  IVASE DRC+RFE GLR EIRTP+TA ++W+  S+LVETAL
Sbjct: 56  LSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAIAKWMNFSQLVETAL 115

Query: 61  RVERSLVDDR 71
           RVE+S+V+++
Sbjct: 116 RVEQSIVEEK 125

[Close]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-17
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           ++V EYEKK+TELS+YA  IVASE DRC+RFE GLR EIRTPVTA ++W   S+LVETAL
Sbjct: 208 LSVAEYEKKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAL 267

Query: 61  RVERSLVDDR 71
           RVE+S+ +++
Sbjct: 268 RVEQSITEEK 277

[Close]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 1   MTVIEYEKKFTELSKYASTIVASEIDRCKRFEDGLRAEIRTPVTASSEWVELSKLVETAL 60
           MTV EYEKK+TELSKYA+ ++  E +RCKRFE+GLR EIRTPVTA ++W + SKLVE AL
Sbjct: 174 MTVAEYEKKYTELSKYATRVIVDEGERCKRFEEGLREEIRTPVTACADWNDFSKLVEVAL 233

Query: 61  RVERSL 67
           RVE+SL
Sbjct: 234 RVEKSL 239

The following BLAST results are available for this feature:
BLAST of Tan0014620 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0014620 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464978.14.0e-1764.29PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
KAA0057197.14.0e-1764.29gag/pol protein [Cucumis melo var. makuwa][more]
TYK18765.14.0e-1764.29gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035138.16.9e-1765.71DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0036813.19.0e-1769.70DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D5E22.0e-1764.29Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G0070... [more]
A0A5A7URC72.0e-1764.29Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G0029... [more]
A0A1S3CMU02.0e-1764.29uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=... [more]
A0A5A7SX063.3e-1765.71DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BB914.4e-1769.70Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
BLAST of Tan0014620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0014620.1Tan0014620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding